Wall clock time and date at job start Mon Mar 30 2020 01:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86801 * 119.99701 * 2 1 4 4 H 1.48510 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47356 * 300.00063 * 3 2 1 6 6 H 1.48499 * 109.47236 * 60.00607 * 3 2 1 7 7 C 1.40151 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.40818 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.33695 * 119.93991 * 0.02562 * 9 7 2 11 11 C 1.31275 * 121.63690 * 179.97438 * 10 9 7 12 12 C 1.39062 * 121.33827 * 359.97438 * 11 10 9 13 13 C 1.38388 * 119.72313 * 0.27868 * 12 11 10 14 14 C 1.39672 * 118.47608 * 359.48008 * 13 12 11 15 15 C 1.47828 * 120.65120 * 180.28392 * 14 13 12 16 16 C 1.39736 * 119.99303 * 130.23277 * 15 14 13 17 17 C 1.37995 * 119.62160 * 180.15258 * 16 15 14 18 18 C 1.37962 * 120.17904 * 359.90662 * 17 16 15 19 19 C 1.39083 * 121.02638 * 359.79552 * 18 17 16 20 20 C 1.38977 * 119.03791 * 0.16610 * 19 18 17 21 21 O 1.36173 * 111.20787 * 180.67987 * 19 18 17 22 22 C 1.43751 * 109.25382 * 341.05450 * 21 19 18 23 23 C 1.51702 * 131.99043 * 179.45462 * 18 17 16 24 24 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.32884 * 179.97438 * 11 10 9 26 26 H 1.08002 * 120.13492 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.76325 * 179.74735 * 13 12 11 28 28 H 1.07999 * 120.18722 * 0.12988 * 16 15 14 29 29 H 1.08003 * 119.91216 * 179.89455 * 17 16 15 30 30 H 1.08000 * 119.94512 * 179.97438 * 20 19 18 31 31 H 1.08999 * 110.74863 * 269.43858 * 22 21 19 32 32 H 1.09003 * 110.74790 * 146.10430 * 22 21 19 33 33 H 1.08999 * 110.93493 * 313.97445 * 23 18 17 34 34 H 1.08997 * 110.93806 * 77.61749 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7009 1.3465 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0077 -1.2137 -0.0005 8 1 3.0876 -1.2137 -0.0001 9 6 1.3036 -2.4333 -0.0005 10 7 -0.0334 -2.4319 -0.0005 11 6 -0.7231 -3.5488 -0.0010 12 6 -0.0925 -4.7882 -0.0021 13 6 1.2897 -4.8548 0.0031 14 6 2.0140 -3.6606 -0.0017 15 6 3.4922 -3.6757 -0.0027 16 6 4.1980 -2.9045 -0.9299 17 6 5.5778 -2.9268 -0.9261 18 6 6.2563 -3.7046 -0.0106 19 6 5.5713 -4.4740 0.9238 20 6 4.1816 -4.4547 0.9249 21 8 6.4335 -5.1477 1.7344 22 6 7.7256 -5.2066 1.1073 23 6 7.7370 -3.9364 0.2245 24 1 -0.4850 0.8400 0.0004 25 1 -1.8022 -3.5042 -0.0006 26 1 -0.6792 -5.6950 -0.0021 27 1 1.7968 -5.8084 0.0065 28 1 3.6667 -2.2948 -1.6457 29 1 6.1280 -2.3339 -1.6417 30 1 3.6349 -5.0469 1.6438 31 1 7.8169 -6.1034 0.4945 32 1 8.5192 -5.1652 1.8534 33 1 8.2565 -4.1202 -0.7159 34 1 8.1832 -3.0959 0.7560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241223833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:54 Heat of formation + Delta-G solvation = 8.154684 kcal Electronic energy + Delta-G solvation = -19269.719445 eV Core-core repulsion = 16324.845204 eV Total energy + Delta-G solvation = -2944.874241 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89151 -40.20569 -38.10067 -35.58424 -34.07381 -32.37337 -32.14151 -30.87583 -29.24697 -27.52786 -24.81924 -23.54628 -23.23305 -22.66479 -21.65897 -19.41792 -18.21320 -17.53509 -17.33597 -17.04202 -16.51567 -16.12140 -15.90524 -15.26960 -14.78231 -14.46988 -14.24118 -14.06541 -13.81671 -13.63226 -13.40989 -12.93138 -12.89273 -12.82295 -12.72324 -12.43661 -12.12487 -11.87045 -11.73893 -11.34253 -11.26276 -10.27092 -9.83205 -9.53645 -9.34590 -8.80740 -8.33526 -6.49424 0.20046 0.53380 0.93586 1.20037 1.38591 1.51500 1.53755 2.20024 2.42243 2.80529 2.87173 3.60221 3.78522 3.90578 4.05988 4.13172 4.23929 4.31446 4.46164 4.47663 4.56325 4.62317 4.73504 4.77910 4.92172 4.96623 5.00524 5.17111 5.22289 5.34544 5.48202 5.55592 5.60631 5.69012 5.84850 5.97833 6.16091 6.29089 6.35646 6.69234 6.95650 8.14586 8.39675 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.006977 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.226429 B = 4012.026705 C = 5320.837563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.024 3.976 3 Si 0.977 3.023 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.448 4.448 8 H 0.099 0.901 9 C 0.237 3.763 10 N -0.520 5.520 11 C 0.112 3.888 12 C -0.313 4.313 13 C -0.042 4.042 14 C -0.247 4.247 15 C 0.035 3.965 16 C -0.147 4.147 17 C -0.069 4.069 18 C -0.199 4.199 19 C 0.090 3.910 20 C -0.161 4.161 21 O -0.330 6.330 22 C 0.045 3.955 23 C -0.098 4.098 24 H 0.280 0.720 25 H 0.140 0.860 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.465 -4.346 -1.080 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.175 1.175 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.478 4.478 8 H 0.117 0.883 9 C 0.114 3.886 10 N -0.232 5.232 11 C -0.055 4.055 12 C -0.336 4.336 13 C -0.066 4.066 14 C -0.252 4.252 15 C 0.034 3.966 16 C -0.165 4.165 17 C -0.087 4.087 18 C -0.200 4.200 19 C 0.046 3.954 20 C -0.180 4.180 21 O -0.245 6.245 22 C -0.029 4.029 23 C -0.135 4.135 24 H 0.091 0.909 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.847 -3.488 -0.863 13.340 hybrid contribution -0.012 -0.238 0.056 0.245 sum 12.835 -3.725 -0.807 13.389 Atomic orbital electron populations 1.70210 1.08927 1.29245 1.28564 1.27045 0.95656 1.04572 0.92575 0.85220 0.79756 0.76282 0.79014 1.17507 1.18607 1.19226 1.20156 0.95429 0.89958 1.42211 0.88312 1.18950 0.88362 0.92357 0.88973 1.68711 1.07703 1.28316 1.18461 1.23070 0.99964 0.89076 0.93392 1.21568 0.94804 0.98508 1.18703 1.21258 0.94207 0.96377 0.94781 1.19622 0.92083 0.94415 1.19032 1.18354 0.91675 0.93570 0.92970 1.21287 0.94126 1.00901 1.00187 1.20431 0.92840 0.97576 0.97840 1.21146 0.97077 1.01828 0.99909 1.19475 0.90809 0.93633 0.91524 1.20312 0.90571 1.05078 1.02080 1.86771 1.21864 1.73376 1.42455 1.24151 0.82885 0.98495 0.97392 1.21829 0.90819 0.98627 1.02218 0.90878 0.84248 0.85357 0.86092 0.86232 0.83292 0.86978 0.89458 0.85040 0.86818 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.24 11.46 21.86 0.25 -39.99 16 2 C 0.02 1.23 5.50 85.33 0.47 1.70 16 3 Si 0.98 37.99 29.56 68.60 2.03 40.02 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.45 -24.08 7.95 23.37 0.19 -23.89 16 8 H 0.10 5.05 5.23 -2.91 -0.02 5.04 16 9 C 0.24 13.19 6.56 40.38 0.26 13.46 16 10 N -0.52 -29.30 7.85 -188.43 -1.48 -30.78 16 11 C 0.11 5.45 11.17 84.97 0.95 6.40 16 12 C -0.31 -13.82 10.10 22.50 0.23 -13.60 16 13 C -0.04 -1.91 9.65 22.65 0.22 -1.69 16 14 C -0.25 -12.30 5.53 -19.51 -0.11 -12.40 16 15 C 0.04 1.56 5.02 -20.10 -0.10 1.46 16 16 C -0.15 -5.91 7.57 22.57 0.17 -5.73 16 17 C -0.07 -2.24 10.01 22.15 0.22 -2.02 16 18 C -0.20 -6.09 6.28 -19.41 -0.12 -6.21 16 19 C 0.09 3.22 7.02 22.65 0.16 3.38 16 20 C -0.16 -6.60 9.55 22.72 0.22 -6.38 16 21 O -0.33 -10.30 11.10 -95.53 -1.06 -11.36 16 22 C 0.04 0.87 8.00 72.56 0.58 1.45 16 23 C -0.10 -1.95 7.12 30.74 0.22 -1.73 16 24 H 0.28 13.56 8.29 -92.71 -0.77 12.79 16 25 H 0.14 5.96 8.06 -2.91 -0.02 5.93 16 26 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.12 5.05 7.23 -2.91 -0.02 5.03 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.11 4.56 8.04 -2.91 -0.02 4.54 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.48 291.92 4.41 -62.07 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.12 Total: 25.85 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.55 Total: -45.82 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.23 Total: -70.77 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.06 Total: -11.36 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -66.48 4.41 -62.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241223833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.224 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds