Wall clock time and date at job start Mon Mar 30 2020 00:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86792 * 120.00312 * 2 1 4 4 H 1.48504 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47203 * 299.99507 * 3 2 1 6 6 H 1.48495 * 109.47407 * 59.99548 * 3 2 1 7 7 C 1.38986 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00591 * 359.97438 * 7 2 1 10 10 C 1.36488 * 126.07307 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.50950 * 179.71474 * 10 9 7 12 12 N 1.40593 * 126.08464 * 180.26039 * 11 10 9 13 13 C 1.34779 * 120.00422 * 180.22435 * 12 11 10 14 14 O 1.21304 * 119.99273 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00010 * 180.02562 * 13 12 11 16 16 O 1.42895 * 110.45969 * 34.29391 * 15 13 12 17 17 C 1.54515 * 110.51049 * 156.90207 * 15 13 12 18 18 C 1.54482 * 104.06169 * 118.63806 * 17 15 13 19 19 O 1.44430 * 104.80177 * 23.98379 * 18 17 15 20 20 C 1.44642 * 105.36708 * 319.56144 * 19 18 17 21 21 C 1.40650 * 107.83535 * 0.42613 * 11 10 9 22 22 N 1.30911 * 108.38933 * 359.56492 * 21 11 10 23 23 H 0.97003 * 119.99601 * 0.02562 * 1 2 3 24 24 H 1.08005 * 126.24274 * 359.97438 * 10 9 7 25 25 H 0.97000 * 119.99641 * 0.21757 * 12 11 10 26 26 H 0.96694 * 114.00287 * 300.70193 * 16 15 13 27 27 H 1.08997 * 110.50883 * 237.29010 * 17 15 13 28 28 H 1.09002 * 110.51050 * 359.97438 * 17 15 13 29 29 H 1.09000 * 110.36672 * 142.80869 * 18 17 15 30 30 H 1.08998 * 110.37579 * 265.14597 * 18 17 15 31 31 H 1.09002 * 110.33899 * 281.59488 * 20 19 18 32 32 H 1.08998 * 110.50696 * 159.19073 * 20 19 18 33 33 H 1.08002 * 125.80999 * 179.83456 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 3.7071 1.3462 0.0006 5 1 1.8885 2.3963 -1.2126 6 1 1.8883 2.3964 1.2124 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3212 -2.3930 0.0016 10 6 1.8747 -3.6406 0.0017 11 6 0.8576 -4.5384 0.0094 12 7 0.9887 -5.9382 0.0173 13 6 -0.1105 -6.7181 0.0198 14 8 -1.2130 -6.2122 0.0158 15 6 0.0302 -8.2185 0.0289 16 8 1.1766 -8.6081 0.7877 17 6 -1.2457 -8.8784 0.5982 18 6 -1.7737 -9.7427 -0.5683 19 8 -0.6137 -10.0047 -1.3879 20 6 0.1258 -8.7619 -1.4140 21 6 -0.3515 -3.8198 0.0041 22 7 -0.0717 -2.5409 0.0031 23 1 -0.4850 0.8401 -0.0004 24 1 2.9299 -3.8710 0.0006 25 1 1.8703 -6.3427 0.0208 26 1 2.0095 -8.2457 0.4560 27 1 -1.0016 -9.5037 1.4569 28 1 -1.9780 -8.1194 0.8735 29 1 -2.1900 -10.6765 -0.1904 30 1 -2.5245 -9.1944 -1.1373 31 1 -0.3324 -8.0630 -2.1138 32 1 1.1665 -8.9423 -1.6833 33 1 -1.3422 -4.2498 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292206080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:14 Heat of formation + Delta-G solvation = -36.382820 kcal Electronic energy + Delta-G solvation = -20176.818352 eV Core-core repulsion = 16819.163556 eV Total energy + Delta-G solvation = -3357.654795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73875 -39.55447 -38.07249 -36.32817 -34.35119 -33.18656 -31.28041 -30.32075 -29.15792 -27.74724 -25.08398 -23.61528 -22.60495 -21.01306 -20.12385 -19.51073 -18.34106 -17.42834 -16.83577 -16.40505 -15.55717 -15.41902 -15.19676 -14.82925 -14.46907 -13.97856 -13.51758 -13.34181 -13.19569 -13.03901 -12.66920 -12.08861 -11.87150 -11.72827 -11.51115 -11.32930 -11.25349 -11.00304 -10.81941 -10.54458 -10.28559 -9.89832 -9.24936 -9.15628 -8.88080 -8.13538 -6.80769 -6.61519 -4.29470 2.56151 2.94816 3.01516 3.08030 3.27178 3.56493 3.74689 3.81977 3.91680 4.22184 4.35919 4.58233 4.66411 4.96626 4.96957 5.03309 5.11852 5.35019 5.41767 5.56709 5.82035 5.87578 6.16185 6.33849 6.48260 6.77561 6.87569 6.97114 7.15833 7.24061 7.78852 8.01957 8.18103 8.49385 8.69368 9.30576 9.59228 10.34452 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.055391 B = 0.003959 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.374734 B = 7070.533995 C = 7314.895551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.323 4.323 8 H 0.118 0.882 9 N -0.140 5.140 10 C -0.082 4.082 11 C -0.066 4.066 12 N -0.615 5.615 13 C 0.482 3.518 14 O -0.524 6.524 15 C 0.090 3.910 16 O -0.538 6.538 17 C -0.135 4.135 18 C 0.047 3.953 19 O -0.368 6.368 20 C 0.032 3.968 21 C -0.031 4.031 22 N -0.260 5.260 23 H 0.275 0.725 24 H 0.146 0.854 25 H 0.394 0.606 26 H 0.377 0.623 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -13.231 -0.942 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.092 4.908 10 C -0.233 4.233 11 C -0.171 4.171 12 N -0.258 5.258 13 C 0.266 3.734 14 O -0.400 6.400 15 C 0.045 3.955 16 O -0.344 6.344 17 C -0.173 4.173 18 C -0.030 4.030 19 O -0.287 6.287 20 C -0.046 4.046 21 C -0.206 4.206 22 N -0.091 5.091 23 H 0.086 0.914 24 H 0.164 0.836 25 H 0.227 0.773 26 H 0.225 0.775 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.978 -12.040 -0.703 12.100 hybrid contribution 1.733 0.188 -0.187 1.753 sum 2.711 -11.852 -0.891 12.190 Atomic orbital electron populations 1.70229 1.06167 1.27992 1.35101 1.25659 0.95721 1.00340 0.95401 0.85746 0.79624 0.80148 0.78531 1.18655 1.19862 1.19865 1.19951 0.91727 0.80509 1.53360 0.86479 1.44575 1.04058 1.03341 1.38781 1.21256 0.96830 0.85361 1.19889 1.17263 0.94448 0.80946 1.24452 1.42447 1.07939 1.04855 1.70546 1.20654 0.85058 0.88567 0.79072 1.90609 1.25622 1.74109 1.49689 1.22841 0.88948 0.90732 0.92946 1.86675 1.16278 1.75248 1.56211 1.22938 0.94304 1.00374 0.99697 1.23493 0.88914 0.99996 0.90565 1.89154 1.36731 1.31494 1.71279 1.24067 0.98711 0.87138 0.94700 1.24094 0.97954 0.90766 1.07800 1.78278 0.90120 1.14990 1.25741 0.91432 0.83616 0.77322 0.77498 0.88936 0.87415 0.88481 0.91422 0.90603 0.87887 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.24 11.81 55.50 0.66 -20.58 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.62 29.55 -169.99 -5.02 13.59 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.32 -8.42 10.25 -14.81 -0.15 -8.57 16 8 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 9 N -0.14 -3.79 3.74 -11.41 -0.04 -3.83 16 10 C -0.08 -1.88 11.49 -16.40 -0.19 -2.07 16 11 C -0.07 -1.47 6.90 -83.84 -0.58 -2.05 16 12 N -0.62 -10.35 5.39 -10.00 -0.05 -10.40 16 13 C 0.48 8.13 6.67 -10.99 -0.07 8.05 16 14 O -0.52 -10.75 12.73 5.54 0.07 -10.68 16 15 C 0.09 1.17 1.41 -90.20 -0.13 1.04 16 16 O -0.54 -6.22 12.89 -35.23 -0.45 -6.68 16 17 C -0.14 -1.67 6.42 -25.16 -0.16 -1.83 16 18 C 0.05 0.51 7.64 37.93 0.29 0.80 16 19 O -0.37 -4.70 11.65 -35.23 -0.41 -5.11 16 20 C 0.03 0.37 6.94 37.93 0.26 0.63 16 21 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 22 N -0.26 -7.48 10.40 30.80 0.32 -7.16 16 23 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.15 2.74 8.06 -52.48 -0.42 2.32 16 25 H 0.39 4.83 7.37 -40.82 -0.30 4.53 16 26 H 0.38 2.79 7.67 45.56 0.35 3.14 16 27 H 0.09 1.07 8.00 -51.93 -0.42 0.65 16 28 H 0.11 1.46 6.77 -51.93 -0.35 1.11 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.93 7.86 -51.93 -0.41 0.53 16 32 H 0.10 0.94 8.09 -51.93 -0.42 0.53 16 33 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 LS Contribution 285.70 15.07 4.31 4.31 Total: -1.00 -34.12 285.70 -4.31 -38.43 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -2.67 Total: 12.00 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.01 Total: -3.90 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.88 Total: -41.98 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.79 Total: -22.46 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.12 -4.31 -38.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292206080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.051 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds