Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 120.00005 * 2 1 4 4 C 1.50698 * 109.46749 * 269.99791 * 3 2 1 5 5 H 1.08001 * 119.99973 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00253 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99560 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00141 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47222 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.47115 * 120.00040 * 8 6 4 11 11 H 1.48501 * 109.47111 * 239.99817 * 8 6 4 12 12 C 1.34771 * 119.99813 * 179.97438 * 2 1 3 13 13 O 1.21626 * 119.99905 * 184.66914 * 12 2 1 14 14 C 1.47309 * 120.00350 * 4.68259 * 12 2 1 15 15 C 1.38325 * 120.73256 * 280.19449 * 14 12 2 16 16 N 1.34943 * 119.02159 * 180.02562 * 15 14 12 17 17 C 1.46504 * 119.70703 * 179.97438 * 16 15 14 18 18 C 1.34450 * 120.59007 * 0.25847 * 16 15 14 19 19 O 1.21906 * 119.20352 * 179.72677 * 18 16 15 20 20 N 1.33331 * 121.59630 * 359.47239 * 18 16 15 21 21 C 1.32214 * 120.92927 * 0.52808 * 20 18 16 22 22 O 1.35017 * 120.33192 * 179.71866 * 21 20 18 23 23 H 1.08999 * 109.47412 * 273.90559 * 1 2 3 24 24 H 1.08993 * 109.46767 * 33.90575 * 1 2 3 25 25 H 1.09000 * 109.46851 * 153.90324 * 1 2 3 26 26 H 1.09001 * 109.46961 * 29.99192 * 3 2 1 27 27 H 1.08997 * 109.47262 * 149.99872 * 3 2 1 28 28 H 0.96999 * 119.99712 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.48832 * 0.02562 * 15 14 12 30 30 H 1.09001 * 109.46687 * 89.99784 * 17 16 15 31 31 H 1.08999 * 109.46974 * 330.00514 * 17 16 15 32 32 H 1.08997 * 109.47133 * 210.00253 * 17 16 15 33 33 H 0.96698 * 113.99926 * 355.00063 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5543 3.6175 -0.6733 8 14 3.4389 3.4160 -3.4341 9 1 2.8608 2.4161 -4.3674 10 1 2.8018 4.7370 -3.6679 11 1 4.9016 3.5237 -3.6671 12 6 2.1389 -1.1672 0.0005 13 8 3.3521 -1.1689 0.0863 14 6 1.4061 -2.4408 -0.1030 15 6 0.7897 -2.9939 1.0049 16 7 0.1282 -4.1624 0.8710 17 6 -0.5296 -4.7618 2.0348 18 6 0.0720 -4.7842 -0.3197 19 8 -0.5284 -5.8413 -0.4110 20 7 0.6528 -4.2703 -1.4043 21 6 1.3171 -3.1289 -1.3431 22 8 1.9055 -2.6223 -2.4477 23 1 -0.3634 0.0700 1.0252 24 1 -0.3632 0.8529 -0.5732 25 1 -0.3633 -0.9229 -0.4521 26 1 1.6084 2.0284 0.5137 27 1 3.1500 1.1384 0.5138 28 1 4.0311 4.4434 -0.8507 29 1 0.8373 -2.4978 1.9631 30 1 -1.5546 -4.3969 2.1007 31 1 0.0126 -4.4877 2.9397 32 1 -0.5361 -5.8467 1.9296 33 1 1.8535 -3.2003 -3.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318223955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = -85.462153 kcal Electronic energy + Delta-G solvation = -20450.270533 eV Core-core repulsion = 17090.487499 eV Total energy + Delta-G solvation = -3359.783035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.03686 -40.66493 -39.68044 -37.97944 -36.58026 -35.80640 -34.71192 -32.66979 -29.70966 -28.57727 -27.38312 -26.17923 -25.44166 -24.10873 -20.99610 -20.91023 -19.40538 -18.64005 -18.49320 -17.86703 -17.36986 -17.19403 -16.58529 -16.15382 -15.88161 -15.57023 -15.36964 -14.94605 -14.47162 -14.39949 -14.08414 -13.75922 -13.43406 -13.42348 -13.17728 -12.81235 -12.66639 -12.46018 -12.23886 -12.18557 -11.65664 -11.37697 -11.28205 -10.75471 -10.60754 -9.74386 -9.44856 -8.19617 -6.32487 -0.51248 0.22852 1.19895 1.39124 1.41589 1.52318 1.62356 2.12026 2.29419 2.42859 2.50992 3.02989 3.11122 3.40348 3.56715 4.08945 4.10054 4.24461 4.37071 4.46443 4.71056 4.80076 4.92422 4.95371 5.05478 5.11939 5.29230 5.57699 5.83941 6.09179 6.10091 6.50892 6.67107 6.77297 6.88392 7.26641 7.42235 8.87540 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032615 B = 0.005170 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.289952 B = 5414.575680 C = 5852.518913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.578 3.422 13 O -0.581 6.581 14 C -0.305 4.305 15 C 0.273 3.727 16 N -0.508 5.508 17 C 0.052 3.948 18 C 0.647 3.353 19 O -0.572 6.572 20 N -0.636 5.636 21 C 0.486 3.514 22 O -0.443 6.443 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.008 0.992 28 H 0.267 0.733 29 H 0.240 0.760 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -11.791 6.734 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.137 3.863 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.364 3.636 13 O -0.461 6.461 14 C -0.317 4.317 15 C 0.133 3.867 16 N -0.220 5.220 17 C -0.088 4.088 18 C 0.349 3.651 19 O -0.450 6.450 20 N -0.396 5.396 21 C 0.287 3.713 22 O -0.239 6.239 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.256 0.744 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.105 0.895 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -10.257 -12.387 6.417 17.315 hybrid contribution 0.590 0.578 -1.041 1.329 sum -9.667 -11.809 5.376 16.180 Atomic orbital electron populations 1.21900 0.77952 1.03033 1.03288 1.48089 1.08276 1.06009 1.69949 1.18865 0.91581 0.79826 0.96033 1.21736 1.36622 1.06416 0.93235 0.93084 1.25745 0.95010 0.96493 1.01487 1.70032 1.39013 1.14825 1.32680 0.85457 0.77834 0.78325 0.79734 1.19386 1.19562 1.20841 1.17640 0.86129 0.83217 0.76635 1.90767 1.15950 1.87633 1.51729 1.19408 1.16570 1.02267 0.93455 1.23177 0.80939 0.82773 0.99855 1.46162 1.42957 1.19152 1.13685 1.22702 1.00060 1.01040 0.85008 1.17450 0.81991 0.85550 0.80145 1.90947 1.46963 1.22947 1.84155 1.69561 1.24482 1.15882 1.29664 1.20238 0.80199 0.84793 0.86084 1.85147 1.70151 1.47477 1.21129 0.89381 0.91527 0.90999 0.94820 0.97392 0.92428 0.74383 0.87791 0.84855 0.89476 0.70764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 10.21 127.77 1.30 3.46 16 2 N -0.59 -23.08 2.86 -855.18 -2.44 -25.52 16 3 C 0.26 13.03 5.22 85.63 0.45 13.47 16 4 C -0.54 -30.20 9.39 25.60 0.24 -29.96 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.66 5.46 84.66 0.46 1.13 16 7 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 8 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 C 0.58 22.47 6.73 86.63 0.58 23.05 16 13 O -0.58 -28.86 16.66 -4.11 -0.07 -28.93 16 14 C -0.30 -8.64 3.78 -19.92 -0.08 -8.72 16 15 C 0.27 4.71 9.88 84.24 0.83 5.55 16 16 N -0.51 -9.34 2.96 -679.95 -2.01 -11.36 16 17 C 0.05 0.45 10.35 127.77 1.32 1.77 16 18 C 0.65 18.82 8.32 179.61 1.49 20.31 16 19 O -0.57 -20.02 16.66 -5.01 -0.08 -20.11 16 20 N -0.64 -19.64 10.38 -438.19 -4.55 -24.19 16 21 C 0.49 14.64 7.93 85.59 0.68 15.31 16 22 O -0.44 -13.42 13.08 -82.89 -1.08 -14.51 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 25 H 0.07 1.66 6.60 -2.39 -0.02 1.64 16 26 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 27 H 0.01 0.46 7.36 -2.39 -0.02 0.44 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.24 1.64 8.05 -2.91 -0.02 1.62 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 0.08 8.02 -2.39 -0.02 0.06 16 32 H 0.09 1.08 7.35 -2.39 -0.02 1.06 16 33 H 0.43 8.62 8.98 -74.06 -0.67 7.95 16 Total: -1.00 -86.13 298.95 -0.15 -86.28 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 0.49 Total: 0.63 kcal Atomic # 6 Polarization: 38.09 SS G_CDS: 7.29 Total: 45.38 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -8.72 Total: -114.92 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -1.24 Total: -63.54 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -86.13 -0.15 -86.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318223955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.815 kcal (2) G-P(sol) polarization free energy of solvation -86.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds