Wall clock time and date at job start Mon Mar 30 2020 00:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35239 * 126.69117 * 2 1 4 4 C 1.42045 * 103.95768 * 179.97438 * 3 2 1 5 5 N 1.39356 * 126.90460 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99283 * 359.71950 * 5 4 3 7 7 O 1.21360 * 120.00533 * 0.27844 * 6 5 4 8 8 C 1.49383 * 119.99776 * 180.27650 * 6 5 4 9 9 O 1.21355 * 120.00075 * 354.17316 * 8 6 5 10 10 N 1.34777 * 120.00048 * 174.17255 * 8 6 5 11 11 C 1.46500 * 119.99806 * 3.62839 * 10 8 6 12 12 C 1.46496 * 120.00056 * 183.63460 * 10 8 6 13 13 C 1.50703 * 109.47638 * 89.99331 * 12 10 8 14 14 H 1.07992 * 119.99523 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99970 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99752 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46959 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47193 * 120.00248 * 17 15 13 20 20 H 1.48507 * 109.46576 * 240.00125 * 17 15 13 21 21 N 1.30758 * 106.19838 * 0.26207 * 4 3 2 22 22 O 1.20911 * 111.46852 * 359.53821 * 21 4 3 23 23 H 1.09000 * 109.47397 * 89.99595 * 1 2 3 24 24 H 1.09002 * 109.47009 * 209.99390 * 1 2 3 25 25 H 1.09000 * 109.46955 * 329.99007 * 1 2 3 26 26 H 1.08002 * 128.01882 * 359.95349 * 3 2 1 27 27 H 0.96992 * 120.00518 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47349 * 84.00131 * 11 10 8 29 29 H 1.09002 * 109.46998 * 203.99750 * 11 10 8 30 30 H 1.08998 * 109.47462 * 323.99464 * 11 10 8 31 31 H 1.09003 * 109.47466 * 209.99837 * 12 10 8 32 32 H 1.09005 * 109.47093 * 329.99560 * 12 10 8 33 33 H 0.97004 * 120.00101 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5355 0.0006 5 7 4.8276 1.2399 0.0014 6 6 4.8190 2.5876 -0.0042 7 8 3.7641 3.1878 -0.0047 8 6 6.1078 3.3428 -0.0096 9 8 7.1601 2.7479 0.0976 10 7 6.1021 4.6848 -0.1336 11 6 4.8303 5.4104 -0.1831 12 6 7.3675 5.4180 -0.2191 13 6 7.7818 5.5385 -1.6630 14 1 7.1641 5.1120 -2.4394 15 6 8.9490 6.1942 -1.9928 16 7 9.7010 6.7140 -1.0474 17 14 9.4622 6.3441 -3.7827 18 1 8.4520 5.6795 -4.6446 19 1 9.5604 7.7794 -4.1509 20 1 10.7825 5.6922 -3.9753 21 7 3.4764 -0.7636 -0.0048 22 8 2.3081 -1.0752 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5140 26 1 2.0303 2.1262 -0.0007 27 1 5.6707 0.7603 0.0021 28 1 4.4757 5.5916 0.8315 29 1 4.9750 6.3629 -0.6930 30 1 4.0940 4.8166 -0.7247 31 1 7.2403 6.4133 0.2067 32 1 8.1367 4.8810 0.3360 33 1 10.5223 7.1750 -1.2794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318230768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:57 Heat of formation + Delta-G solvation = 13.191432 kcal Electronic energy + Delta-G solvation = -19880.510770 eV Core-core repulsion = 16525.005675 eV Total energy + Delta-G solvation = -3355.505094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.98817 -40.65143 -38.25505 -36.15069 -34.84344 -33.76946 -32.66266 -32.01757 -28.20258 -27.97906 -26.46701 -25.00819 -23.63287 -22.34156 -20.95585 -19.58952 -17.81270 -17.54695 -17.25046 -16.80997 -16.67977 -15.70720 -15.63195 -15.14162 -14.45658 -13.99904 -13.84906 -13.73281 -13.51502 -13.17043 -12.70953 -12.51871 -12.25867 -12.09159 -11.78802 -11.39407 -11.34922 -11.04989 -10.82505 -10.61842 -10.27268 -9.73178 -9.55689 -9.01922 -8.94273 -8.54404 -7.90143 -6.15694 -4.21743 1.15714 1.56323 2.21923 2.40281 2.99241 3.24653 3.32338 3.36334 3.57836 3.75850 4.19820 4.35784 4.60813 4.74220 4.92321 5.04783 5.11994 5.19405 5.33096 5.56794 5.74039 5.89035 6.02735 6.19687 6.45287 6.67505 6.90622 7.18704 7.28118 7.64892 7.80104 8.04952 8.06680 8.19192 8.48273 8.82856 9.43860 10.92535 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.003995 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.361225 B = 7007.514202 C = 7121.703288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.028 4.028 3 C -0.226 4.226 4 C 0.250 3.750 5 N -0.611 5.611 6 C 0.520 3.480 7 O -0.496 6.496 8 C 0.500 3.500 9 O -0.520 6.520 10 N -0.557 5.557 11 C 0.067 3.933 12 C 0.241 3.759 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.281 1.281 21 N -0.388 5.388 22 O 0.097 5.903 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.431 0.569 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.710 -9.427 2.707 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.248 4.248 4 C 0.001 3.999 5 N -0.265 5.265 6 C 0.303 3.697 7 O -0.368 6.368 8 C 0.280 3.720 9 O -0.397 6.397 10 N -0.288 5.288 11 C -0.076 4.076 12 C 0.122 3.878 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.104 5.104 22 O 0.036 5.964 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.209 0.791 27 H 0.270 0.730 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.869 -10.125 2.794 19.872 hybrid contribution 0.559 0.718 -0.985 1.341 sum -16.310 -9.407 1.808 18.915 Atomic orbital electron populations 1.20331 0.83738 1.04662 1.04175 1.24436 0.96483 0.85876 1.02406 1.22748 0.89166 1.02225 1.10693 1.20531 0.88410 0.88883 1.02071 1.42308 1.06904 1.06271 1.70972 1.21103 0.91578 0.81302 0.75699 1.90574 1.33242 1.67108 1.45876 1.19236 0.87328 0.84040 0.81403 1.90766 1.31538 1.67792 1.49632 1.48127 1.10467 1.04426 1.65810 1.22253 0.85469 0.98190 1.01728 1.19583 0.78660 0.91394 0.98134 1.21412 1.07420 1.36435 0.91954 0.92142 1.24933 0.95919 0.95085 0.98000 1.69936 1.14126 1.36630 1.32307 0.86386 0.78663 0.77753 0.84315 1.19726 1.20797 1.20742 1.74079 0.97454 1.13125 1.25753 1.84793 1.10428 1.32362 1.68792 0.89331 0.89826 0.88886 0.79118 0.73013 0.93072 0.90869 0.89023 0.93938 0.93175 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.01 0.38 -0.01 16 2 C -0.03 -0.29 7.47 -35.37 -0.26 -0.55 16 3 C -0.23 -2.86 9.79 -39.19 -0.38 -3.25 16 4 C 0.25 3.71 8.17 -154.93 -1.27 2.44 16 5 N -0.61 -9.48 5.41 -11.85 -0.06 -9.55 16 6 C 0.52 8.90 7.74 -11.62 -0.09 8.81 16 7 O -0.50 -8.17 10.41 5.49 0.06 -8.11 16 8 C 0.50 10.31 7.73 -11.62 -0.09 10.22 16 9 O -0.52 -12.11 16.05 5.49 0.09 -12.02 16 10 N -0.56 -11.84 2.86 -183.49 -0.52 -12.36 16 11 C 0.07 1.14 9.55 59.85 0.57 1.71 16 12 C 0.24 6.10 5.16 -5.19 -0.03 6.07 16 13 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 17 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 N -0.39 -5.67 12.10 31.18 0.38 -5.29 16 22 O 0.10 1.21 11.19 17.07 0.19 1.40 16 23 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.19 2.38 6.22 -52.49 -0.33 2.06 16 27 H 0.43 6.36 8.31 -40.82 -0.34 6.02 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 30 H 0.09 1.50 5.35 -51.94 -0.28 1.22 16 31 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.05 1.41 7.37 -51.93 -0.38 1.02 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -31.69 295.10 -4.70 -36.39 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -3.40 Total: 1.71 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -1.59 Total: 12.07 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.53 Total: -52.22 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.34 Total: -18.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.69 -4.70 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318230768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds