Wall clock time and date at job start Mon Mar 30 2020 00:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35239 * 126.69117 * 2 1 4 4 C 1.42045 * 103.95768 * 179.97438 * 3 2 1 5 5 N 1.39356 * 126.90460 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99283 * 359.71950 * 5 4 3 7 7 O 1.21360 * 120.00533 * 0.27844 * 6 5 4 8 8 C 1.49383 * 119.99776 * 180.27650 * 6 5 4 9 9 O 1.21355 * 120.00075 * 354.17316 * 8 6 5 10 10 N 1.34777 * 120.00048 * 174.17255 * 8 6 5 11 11 C 1.46500 * 119.99806 * 3.62839 * 10 8 6 12 12 C 1.46496 * 120.00056 * 183.63460 * 10 8 6 13 13 C 1.50703 * 109.47638 * 89.99331 * 12 10 8 14 14 H 1.07992 * 119.99523 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99970 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99752 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46959 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47193 * 120.00248 * 17 15 13 20 20 H 1.48507 * 109.46576 * 240.00125 * 17 15 13 21 21 N 1.30758 * 106.19838 * 0.26207 * 4 3 2 22 22 O 1.20911 * 111.46852 * 359.53821 * 21 4 3 23 23 H 1.09000 * 109.47397 * 89.99595 * 1 2 3 24 24 H 1.09002 * 109.47009 * 209.99390 * 1 2 3 25 25 H 1.09000 * 109.46955 * 329.99007 * 1 2 3 26 26 H 1.08002 * 128.01882 * 359.95349 * 3 2 1 27 27 H 0.96992 * 120.00518 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47349 * 84.00131 * 11 10 8 29 29 H 1.09002 * 109.46998 * 203.99750 * 11 10 8 30 30 H 1.08998 * 109.47462 * 323.99464 * 11 10 8 31 31 H 1.09003 * 109.47466 * 209.99837 * 12 10 8 32 32 H 1.09005 * 109.47093 * 329.99560 * 12 10 8 33 33 H 0.97004 * 120.00101 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5355 0.0006 5 7 4.8276 1.2399 0.0014 6 6 4.8190 2.5876 -0.0042 7 8 3.7641 3.1878 -0.0047 8 6 6.1078 3.3428 -0.0096 9 8 7.1601 2.7479 0.0976 10 7 6.1021 4.6848 -0.1336 11 6 4.8303 5.4104 -0.1831 12 6 7.3675 5.4180 -0.2191 13 6 7.7818 5.5385 -1.6630 14 1 7.1641 5.1120 -2.4394 15 6 8.9490 6.1942 -1.9928 16 7 9.7010 6.7140 -1.0474 17 14 9.4622 6.3441 -3.7827 18 1 8.4520 5.6795 -4.6446 19 1 9.5604 7.7794 -4.1509 20 1 10.7825 5.6922 -3.9753 21 7 3.4764 -0.7636 -0.0048 22 8 2.3081 -1.0752 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5140 26 1 2.0303 2.1262 -0.0007 27 1 5.6707 0.7603 0.0021 28 1 4.4757 5.5916 0.8315 29 1 4.9750 6.3629 -0.6930 30 1 4.0940 4.8166 -0.7247 31 1 7.2403 6.4133 0.2067 32 1 8.1367 4.8810 0.3360 33 1 10.5223 7.1750 -1.2794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318230768.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:56 Heat of formation + Delta-G solvation = -8.399377 kcal Electronic energy + Delta-G solvation = -19881.447017 eV Core-core repulsion = 16525.005675 eV Total energy + Delta-G solvation = -3356.441342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.01432 -42.09885 -39.83394 -37.56197 -36.41788 -34.71311 -34.58475 -33.13394 -30.13229 -28.67981 -27.95229 -26.66489 -25.04680 -23.79988 -22.08209 -21.09608 -18.86363 -18.79422 -18.75269 -18.59352 -17.95406 -17.26128 -17.15678 -16.74598 -16.18982 -15.50986 -15.08566 -14.68205 -14.39047 -14.31486 -13.95491 -13.91210 -13.67461 -13.40707 -13.20164 -13.05043 -12.91161 -12.65666 -12.30478 -12.26276 -12.24344 -11.72342 -10.68152 -10.55597 -10.44944 -10.08553 -9.65400 -8.27353 -6.42255 -0.10392 0.53378 0.86023 1.22396 1.38020 1.39946 1.51890 2.05071 2.13341 2.30937 2.41204 3.02102 3.07480 3.29977 3.73979 4.01233 4.32691 4.40748 4.58277 4.69684 4.79420 4.82108 4.88104 5.02039 5.11682 5.16224 5.29556 5.37218 5.58713 5.69621 5.95491 6.20095 6.45817 6.63826 6.86560 7.20934 7.28443 8.80655 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.003995 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.361225 B = 7007.514202 C = 7121.703288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.002 4.002 3 C -0.247 4.247 4 C 0.226 3.774 5 N -0.606 5.606 6 C 0.534 3.466 7 O -0.487 6.487 8 C 0.495 3.505 9 O -0.555 6.555 10 N -0.565 5.565 11 C 0.068 3.932 12 C 0.254 3.746 13 C -0.550 4.550 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.269 1.269 20 H -0.280 1.280 21 N -0.407 5.407 22 O 0.100 5.900 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.194 0.806 27 H 0.432 0.568 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.014 0.986 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.116 -9.863 1.838 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.270 4.270 4 C -0.021 4.021 5 N -0.258 5.258 6 C 0.316 3.684 7 O -0.360 6.360 8 C 0.276 3.724 9 O -0.435 6.435 10 N -0.295 5.295 11 C -0.074 4.074 12 C 0.134 3.866 13 C -0.588 4.588 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.793 3.207 18 H -0.193 1.193 19 H -0.194 1.194 20 H -0.206 1.206 21 N -0.122 5.122 22 O 0.038 5.962 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.211 0.789 27 H 0.271 0.729 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.319 -10.570 1.931 22.106 hybrid contribution 1.195 0.777 -0.662 1.571 sum -18.124 -9.793 1.269 20.639 Atomic orbital electron populations 1.20653 0.79844 1.06488 1.05898 1.25235 0.98171 0.84247 0.98926 1.22842 0.88563 1.03057 1.12533 1.20761 0.88536 0.89375 1.03471 1.42063 1.07647 1.05629 1.70445 1.20099 0.89950 0.81763 0.76623 1.90568 1.32259 1.67157 1.45975 1.19782 0.88405 0.83900 0.80277 1.90737 1.33327 1.68512 1.50935 1.48099 1.10537 1.05002 1.65905 1.22439 0.83647 0.97973 1.03313 1.19111 0.79839 0.90941 0.96721 1.21664 1.07843 1.36569 0.92763 0.92611 1.25810 0.95837 0.94584 1.02443 1.70037 1.14598 1.37179 1.34453 0.85344 0.78074 0.78310 0.78942 1.19251 1.19402 1.20573 1.74082 0.98704 1.13111 1.26333 1.84767 1.10061 1.33064 1.68258 0.87399 0.87841 0.87189 0.78930 0.72937 0.90936 0.90750 0.87861 0.94397 0.96760 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 71.24 0.74 0.27 16 2 C 0.00 -0.03 7.47 24.99 0.19 0.15 16 3 C -0.25 -5.82 9.79 22.52 0.22 -5.60 16 4 C 0.23 6.53 8.17 134.15 1.10 7.62 16 5 N -0.61 -18.75 5.41 -310.80 -1.68 -20.43 16 6 C 0.53 18.09 7.74 87.25 0.68 18.77 16 7 O -0.49 -15.41 10.41 -3.28 -0.03 -15.44 16 8 C 0.50 20.77 7.73 87.25 0.67 21.44 16 9 O -0.56 -26.83 16.05 -3.26 -0.05 -26.88 16 10 N -0.56 -24.29 2.86 -852.81 -2.44 -26.72 16 11 C 0.07 2.25 9.55 127.77 1.22 3.47 16 12 C 0.25 13.28 5.16 85.63 0.44 13.72 16 13 C -0.55 -30.81 9.39 25.60 0.24 -30.57 16 14 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.73 5.46 84.65 0.46 1.20 16 16 N -0.92 -54.08 13.29 21.45 0.28 -53.80 16 17 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 N -0.41 -11.52 12.10 -56.33 -0.68 -12.20 16 22 O 0.10 2.30 11.19 71.26 0.80 3.09 16 23 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.19 4.43 6.22 -2.91 -0.02 4.41 16 27 H 0.43 13.02 8.31 -92.71 -0.77 12.25 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 30 H 0.10 3.21 5.35 -2.50 -0.01 3.20 16 31 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 32 H 0.01 0.84 7.37 -2.38 -0.02 0.82 16 33 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -69.06 295.10 4.58 -64.49 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.39 Total: 11.64 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 5.96 Total: 30.47 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.51 Total: -113.16 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: 0.71 Total: -39.24 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.06 4.58 -64.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318230768.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.089 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds