Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35830 * 119.25261 * 2 1 4 4 C 1.38123 * 119.32075 * 180.27610 * 3 2 1 5 5 C 1.47072 * 120.95607 * 179.70399 * 4 3 2 6 6 O 1.21649 * 120.00078 * 5.56354 * 5 4 3 7 7 N 1.34781 * 119.99915 * 185.56230 * 5 4 3 8 8 C 1.46491 * 119.99852 * 174.95155 * 7 5 4 9 9 C 1.50698 * 109.47370 * 180.27499 * 8 7 5 10 10 H 1.08008 * 119.99600 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00507 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00373 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47023 * 90.00327 * 13 11 9 15 15 H 1.48496 * 109.47122 * 210.00303 * 13 11 9 16 16 H 1.48500 * 109.47138 * 330.00424 * 13 11 9 17 17 C 1.47177 * 118.08683 * 359.42832 * 4 3 2 18 18 O 1.21673 * 120.73434 * 180.25775 * 17 4 3 19 19 N 1.34968 * 118.52672 * 0.27518 * 17 4 3 20 20 C 1.46505 * 119.78284 * 180.02562 * 19 17 4 21 21 C 1.34232 * 119.24734 * 179.67260 * 2 1 3 22 22 O 1.21556 * 118.93730 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47227 * 270.32829 * 1 2 3 24 24 H 1.09006 * 109.46846 * 30.33191 * 1 2 3 25 25 H 1.08998 * 109.47180 * 150.32446 * 1 2 3 26 26 H 1.08001 * 120.33934 * 359.97188 * 3 2 1 27 27 H 0.97003 * 119.99817 * 355.23078 * 7 5 4 28 28 H 1.09004 * 109.47867 * 300.27778 * 8 7 5 29 29 H 1.09010 * 109.47496 * 60.27869 * 8 7 5 30 30 H 0.97002 * 120.00667 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.46629 * 359.97438 * 20 19 17 32 32 H 1.08996 * 109.47328 * 120.00150 * 20 19 17 33 33 H 1.08994 * 109.46896 * 240.00550 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1288 1.1851 0.0000 4 6 3.5100 1.1867 -0.0058 5 6 4.2650 2.4489 -0.0125 6 8 3.6778 3.5094 0.0891 7 7 5.6074 2.4305 -0.1312 8 6 6.3496 3.6879 -0.2493 9 6 7.8219 3.3924 -0.3749 10 1 8.1701 2.3700 -0.3672 11 6 8.7247 4.4271 -0.4987 12 7 10.0096 4.1692 -0.6089 13 14 8.1227 6.1954 -0.5113 14 1 8.0924 6.7179 0.8784 15 1 9.0408 7.0251 -1.3322 16 1 6.7562 6.2490 -1.0902 17 6 4.2045 -0.1109 0.0012 18 8 5.4200 -0.1656 0.0012 19 7 3.4632 -1.2387 0.0072 20 6 4.1260 -2.5452 0.0148 21 6 2.1209 -1.1712 0.0067 22 8 1.4800 -2.2041 0.0121 23 1 -0.3633 0.0059 1.0276 24 1 -0.3633 0.8871 -0.5190 25 1 -0.3633 -0.8929 -0.5088 26 1 1.5821 2.1165 -0.0005 27 1 6.0817 1.5844 -0.1426 28 1 6.0108 4.2284 -1.1332 29 1 6.1758 4.2971 0.6379 30 1 10.6447 4.8971 -0.6964 31 1 5.2069 -2.4042 0.0140 32 1 3.8318 -3.0967 0.9077 33 1 3.8326 -3.1066 -0.8722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324853598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -61.239895 kcal Electronic energy + Delta-G solvation = -20216.274514 eV Core-core repulsion = 16857.541836 eV Total energy + Delta-G solvation = -3358.732679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.51673 -39.55676 -38.63535 -37.38227 -35.57036 -34.16165 -32.32200 -31.88346 -28.69896 -28.01261 -27.12680 -24.53862 -23.73338 -22.03109 -20.38505 -19.35303 -18.32336 -17.56185 -17.46713 -16.64002 -15.91354 -15.67588 -15.16010 -15.13599 -14.97696 -14.55056 -14.09432 -13.89860 -13.70555 -13.18715 -13.06453 -12.85407 -12.56914 -12.29334 -12.18652 -11.62197 -11.21795 -10.95477 -10.71720 -10.39463 -10.04225 -9.89226 -9.48747 -9.35275 -8.82292 -8.68787 -8.00552 -6.12171 -4.13608 0.57002 1.55147 1.60682 2.60314 2.89507 3.31871 3.38095 3.45851 3.77218 3.81507 4.07916 4.40148 4.53270 4.58582 4.80591 4.92047 5.08549 5.13898 5.15210 5.22282 5.26136 5.47673 5.53656 5.74920 5.98894 6.85801 6.87000 7.14028 7.16809 7.35167 7.47407 7.61685 8.23869 8.66538 8.85196 9.03026 9.47587 11.00095 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.004812 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.591935 B = 5817.348686 C = 6628.452661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.530 5.530 3 C 0.228 3.772 4 C -0.298 4.298 5 C 0.571 3.429 6 O -0.568 6.568 7 N -0.687 5.687 8 C 0.219 3.781 9 C -0.540 4.540 10 H 0.081 0.919 11 C 0.077 3.923 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.555 3.445 18 O -0.487 6.487 19 N -0.553 5.553 20 C 0.079 3.921 21 C 0.693 3.307 22 O -0.538 6.538 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.196 0.804 27 H 0.411 0.589 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -10.625 0.999 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.248 5.248 3 C 0.101 3.899 4 C -0.311 4.311 5 C 0.355 3.645 6 O -0.451 6.451 7 N -0.341 5.341 8 C 0.096 3.904 9 C -0.578 4.578 10 H 0.099 0.901 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C 0.349 3.651 18 O -0.359 6.359 19 N -0.297 5.297 20 C -0.062 4.062 21 C 0.397 3.603 22 O -0.412 6.412 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.212 0.788 27 H 0.254 0.746 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.789 -10.578 1.025 22.462 hybrid contribution 0.076 0.552 0.009 0.558 sum -19.713 -10.026 1.034 22.140 Atomic orbital electron populations 1.22223 0.74102 1.05715 1.04541 1.44439 1.09991 1.04309 1.66018 1.22870 0.92561 0.89807 0.84688 1.21893 0.92771 0.94132 1.22310 1.17042 0.83207 0.86066 0.78172 1.90745 1.69886 1.30815 1.53682 1.46549 1.05303 1.13232 1.69048 1.19542 0.91926 0.82261 0.96624 1.21131 0.88532 0.96009 1.52125 0.90095 1.24794 0.94616 0.99197 0.94054 1.69889 1.01283 1.32694 1.49257 0.86817 0.79477 0.84573 0.78789 1.19871 1.20986 1.18505 1.18564 0.87532 0.83367 0.75661 1.90735 1.12355 1.85577 1.47216 1.46232 1.05637 1.10762 1.67039 1.21972 0.99832 0.80608 1.03785 1.15721 0.81892 0.84029 0.78704 1.91001 1.65042 1.31207 1.53929 0.90134 0.88671 0.88347 0.78770 0.74597 0.95613 0.95925 0.92363 0.87535 0.90251 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.31 59.85 0.62 0.98 16 2 N -0.53 -4.82 2.97 -128.51 -0.38 -5.20 16 3 C 0.23 2.37 9.96 -15.82 -0.16 2.21 16 4 C -0.30 -4.49 6.05 -102.73 -0.62 -5.11 16 5 C 0.57 11.38 7.75 -12.68 -0.10 11.29 16 6 O -0.57 -12.33 16.42 5.23 0.09 -12.24 16 7 N -0.69 -15.66 5.49 -62.68 -0.34 -16.00 16 8 C 0.22 5.66 4.50 -5.20 -0.02 5.63 16 9 C -0.54 -15.64 9.83 -34.44 -0.34 -15.98 16 10 H 0.08 2.50 7.84 -52.48 -0.41 2.09 16 11 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 12 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 13 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.55 8.48 7.63 -12.55 -0.10 8.38 16 18 O -0.49 -8.84 13.38 5.21 0.07 -8.77 16 19 N -0.55 -6.94 2.96 -129.64 -0.38 -7.33 16 20 C 0.08 0.80 9.96 59.85 0.60 1.39 16 21 C 0.69 8.09 8.09 -87.74 -0.71 7.38 16 22 O -0.54 -6.95 15.61 5.32 0.08 -6.87 16 23 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.09 0.21 8.01 -51.93 -0.42 -0.21 16 25 H 0.10 0.52 7.31 -51.93 -0.38 0.14 16 26 H 0.20 1.52 7.69 -52.49 -0.40 1.11 16 27 H 0.41 9.32 5.09 -40.82 -0.21 9.11 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 29 H 0.02 0.60 7.57 -51.92 -0.39 0.21 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.11 1.12 6.92 -51.93 -0.36 0.76 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -36.00 288.93 -4.72 -40.72 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.38 Total: 2.47 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: -0.93 Total: 18.31 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.34 Total: -55.07 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: 0.24 Total: -27.88 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.00 -4.72 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324853598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds