Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35830 * 119.25261 * 2 1 4 4 C 1.38123 * 119.32075 * 180.27610 * 3 2 1 5 5 C 1.47072 * 120.95607 * 179.70399 * 4 3 2 6 6 O 1.21649 * 120.00078 * 5.56354 * 5 4 3 7 7 N 1.34781 * 119.99915 * 185.56230 * 5 4 3 8 8 C 1.46491 * 119.99852 * 174.95155 * 7 5 4 9 9 C 1.50698 * 109.47370 * 180.27499 * 8 7 5 10 10 H 1.08008 * 119.99600 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00507 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00373 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47023 * 90.00327 * 13 11 9 15 15 H 1.48496 * 109.47122 * 210.00303 * 13 11 9 16 16 H 1.48500 * 109.47138 * 330.00424 * 13 11 9 17 17 C 1.47177 * 118.08683 * 359.42832 * 4 3 2 18 18 O 1.21673 * 120.73434 * 180.25775 * 17 4 3 19 19 N 1.34968 * 118.52672 * 0.27518 * 17 4 3 20 20 C 1.46505 * 119.78284 * 180.02562 * 19 17 4 21 21 C 1.34232 * 119.24734 * 179.67260 * 2 1 3 22 22 O 1.21556 * 118.93730 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47227 * 270.32829 * 1 2 3 24 24 H 1.09006 * 109.46846 * 30.33191 * 1 2 3 25 25 H 1.08998 * 109.47180 * 150.32446 * 1 2 3 26 26 H 1.08001 * 120.33934 * 359.97188 * 3 2 1 27 27 H 0.97003 * 119.99817 * 355.23078 * 7 5 4 28 28 H 1.09004 * 109.47867 * 300.27778 * 8 7 5 29 29 H 1.09010 * 109.47496 * 60.27869 * 8 7 5 30 30 H 0.97002 * 120.00667 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.46629 * 359.97438 * 20 19 17 32 32 H 1.08996 * 109.47328 * 120.00150 * 20 19 17 33 33 H 1.08994 * 109.46896 * 240.00550 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1288 1.1851 0.0000 4 6 3.5100 1.1867 -0.0058 5 6 4.2650 2.4489 -0.0125 6 8 3.6778 3.5094 0.0891 7 7 5.6074 2.4305 -0.1312 8 6 6.3496 3.6879 -0.2493 9 6 7.8219 3.3924 -0.3749 10 1 8.1701 2.3700 -0.3672 11 6 8.7247 4.4271 -0.4987 12 7 10.0096 4.1692 -0.6089 13 14 8.1227 6.1954 -0.5113 14 1 8.0924 6.7179 0.8784 15 1 9.0408 7.0251 -1.3322 16 1 6.7562 6.2490 -1.0902 17 6 4.2045 -0.1109 0.0012 18 8 5.4200 -0.1656 0.0012 19 7 3.4632 -1.2387 0.0072 20 6 4.1260 -2.5452 0.0148 21 6 2.1209 -1.1712 0.0067 22 8 1.4800 -2.2041 0.0121 23 1 -0.3633 0.0059 1.0276 24 1 -0.3633 0.8871 -0.5190 25 1 -0.3633 -0.8929 -0.5088 26 1 1.5821 2.1165 -0.0005 27 1 6.0817 1.5844 -0.1426 28 1 6.0108 4.2284 -1.1332 29 1 6.1758 4.2971 0.6379 30 1 10.6447 4.8971 -0.6964 31 1 5.2069 -2.4042 0.0140 32 1 3.8318 -3.0967 0.9077 33 1 3.8326 -3.1066 -0.8722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324853598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -89.318901 kcal Electronic energy + Delta-G solvation = -20217.492112 eV Core-core repulsion = 16857.541836 eV Total energy + Delta-G solvation = -3359.950276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.50092 -40.80898 -39.97208 -38.39863 -36.66226 -36.01994 -34.34127 -32.98788 -30.04661 -29.38799 -27.95474 -25.79743 -24.71714 -23.83903 -21.90773 -20.42378 -19.76051 -18.64457 -18.41291 -18.39951 -17.05410 -16.87400 -16.79557 -16.22556 -16.13462 -15.91449 -15.81184 -15.11840 -14.82003 -14.74079 -14.21406 -14.03400 -13.91710 -13.44201 -13.32089 -13.02131 -12.66916 -12.40440 -12.18741 -11.91038 -11.71818 -11.48577 -11.05664 -11.03674 -10.89426 -10.02566 -9.64717 -8.37081 -6.45643 -0.42806 0.54596 0.69474 1.37063 1.37802 1.51917 1.62489 1.71608 2.31727 2.42729 2.51140 2.97470 3.02575 3.63676 3.81856 4.03806 4.18856 4.29483 4.36156 4.41647 4.50640 4.71232 4.77893 4.84597 4.90879 5.05565 5.07970 5.28812 5.56433 5.88946 6.09985 6.18510 6.54439 6.58818 6.91122 7.15605 7.39259 8.78721 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.004812 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.591935 B = 5817.348686 C = 6628.452661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.516 5.516 3 C 0.293 3.707 4 C -0.348 4.348 5 C 0.576 3.424 6 O -0.589 6.589 7 N -0.706 5.706 8 C 0.231 3.769 9 C -0.553 4.553 10 H 0.043 0.957 11 C 0.022 3.978 12 N -0.936 5.936 13 Si 0.949 3.051 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.252 1.252 17 C 0.555 3.445 18 O -0.531 6.531 19 N -0.552 5.552 20 C 0.074 3.926 21 C 0.690 3.310 22 O -0.545 6.545 23 H 0.099 0.901 24 H 0.132 0.868 25 H 0.096 0.904 26 H 0.233 0.767 27 H 0.409 0.591 28 H 0.022 0.978 29 H 0.019 0.981 30 H 0.273 0.727 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.452 -9.935 1.079 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.231 5.231 3 C 0.162 3.838 4 C -0.361 4.361 5 C 0.364 3.636 6 O -0.473 6.473 7 N -0.361 5.361 8 C 0.108 3.892 9 C -0.590 4.590 10 H 0.061 0.939 11 C -0.178 4.178 12 N -0.575 5.575 13 Si 0.771 3.229 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.176 1.176 17 C 0.351 3.649 18 O -0.407 6.407 19 N -0.295 5.295 20 C -0.066 4.066 21 C 0.393 3.607 22 O -0.419 6.419 23 H 0.118 0.882 24 H 0.150 0.850 25 H 0.115 0.885 26 H 0.250 0.750 27 H 0.252 0.748 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.416 -9.956 1.109 25.469 hybrid contribution 0.993 0.153 -0.006 1.005 sum -22.422 -9.803 1.104 24.497 Atomic orbital electron populations 1.22713 0.70778 1.07555 1.06454 1.44813 1.11739 1.03121 1.63425 1.23269 0.90899 0.91175 0.78474 1.21228 0.94193 0.91808 1.28889 1.17471 0.82140 0.87623 0.76382 1.90709 1.69923 1.32143 1.54564 1.46523 1.06723 1.11873 1.70992 1.19165 0.90252 0.83767 0.96029 1.21306 0.90710 0.94586 1.52447 0.93891 1.25745 0.94579 1.04200 0.93241 1.70016 1.02718 1.34565 1.50162 0.85691 0.79332 0.78351 0.79498 1.18691 1.19684 1.17623 1.18626 0.87100 0.84148 0.75043 1.90704 1.14123 1.86072 1.49787 1.46277 1.06159 1.10740 1.66339 1.22127 0.99349 0.79926 1.05177 1.15884 0.81443 0.84763 0.78565 1.91010 1.65002 1.31739 1.54184 0.88226 0.84956 0.88515 0.75031 0.74841 0.96035 0.96343 0.91798 0.88497 0.88794 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.31 127.77 1.32 1.61 16 2 N -0.52 -7.30 2.97 -679.08 -2.02 -9.32 16 3 C 0.29 4.96 9.96 84.05 0.84 5.80 16 4 C -0.35 -10.08 6.05 -18.64 -0.11 -10.19 16 5 C 0.58 22.87 7.75 86.56 0.67 23.54 16 6 O -0.59 -24.81 16.42 -4.19 -0.07 -24.88 16 7 N -0.71 -33.23 5.49 -470.44 -2.58 -35.82 16 8 C 0.23 12.22 4.50 85.63 0.39 12.61 16 9 C -0.55 -33.33 9.83 25.60 0.25 -33.08 16 10 H 0.04 2.84 7.84 -2.91 -0.02 2.81 16 11 C 0.02 1.30 5.47 84.65 0.46 1.77 16 12 N -0.94 -58.67 13.96 21.44 0.30 -58.37 16 13 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 14 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 17 C 0.56 17.06 7.63 86.56 0.66 17.72 16 18 O -0.53 -20.36 13.38 -4.26 -0.06 -20.42 16 19 N -0.55 -13.34 2.96 -800.68 -2.37 -15.71 16 20 C 0.07 1.47 9.96 127.77 1.27 2.74 16 21 C 0.69 14.30 8.09 179.34 1.45 15.75 16 22 O -0.55 -12.56 15.61 -3.89 -0.06 -12.62 16 23 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 24 H 0.13 -0.27 8.01 -2.38 -0.02 -0.29 16 25 H 0.10 0.60 7.31 -2.39 -0.02 0.58 16 26 H 0.23 2.30 7.69 -2.91 -0.02 2.28 16 27 H 0.41 19.65 5.09 -92.71 -0.47 19.18 16 28 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 29 H 0.02 0.99 7.57 -2.38 -0.02 0.97 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.10 2.13 6.92 -2.39 -0.02 2.11 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -81.46 288.93 2.85 -78.60 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.63 Total: 13.31 kcal Atomic # 6 Polarization: 31.07 SS G_CDS: 7.20 Total: 38.26 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -6.67 Total: -119.22 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.19 Total: -57.92 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -81.46 2.85 -78.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324853598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.715 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds