Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34756 * 116.99855 * 2 1 4 4 O 1.21524 * 120.00217 * 0.02562 * 3 2 1 5 5 C 1.47284 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.41348 * 126.42657 * 359.97438 * 5 3 2 7 7 N 1.30434 * 108.00880 * 179.77968 * 6 5 3 8 8 N 1.39926 * 108.92362 * 0.37599 * 7 6 5 9 9 C 1.46499 * 125.74769 * 179.87532 * 8 7 6 10 10 C 1.50701 * 109.46992 * 304.69337 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48505 * 109.46876 * 210.00288 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 C 1.34227 * 108.50903 * 359.61182 * 8 7 6 23 23 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46852 * 299.99885 * 1 2 3 25 25 H 1.08996 * 109.47445 * 59.99768 * 1 2 3 26 26 H 1.07993 * 125.99695 * 359.97438 * 6 5 3 27 27 H 1.09002 * 109.47391 * 184.69328 * 9 8 7 28 28 H 1.09001 * 109.46813 * 64.69384 * 9 8 7 29 29 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 31 31 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 32 32 H 0.97009 * 119.99937 * 179.97438 * 17 16 14 33 33 H 1.08003 * 126.29422 * 180.22385 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5346 1.2778 -0.0006 6 6 4.4323 0.1859 -0.0006 7 7 5.6465 0.6622 -0.0060 8 7 5.5857 2.0601 -0.0008 9 6 6.7363 2.9669 -0.0018 10 6 7.6356 2.6385 1.1621 11 8 7.3442 1.7356 1.9176 12 7 8.7641 3.3475 1.3628 13 6 9.6385 3.0279 2.4939 14 6 10.8221 3.9608 2.4930 15 1 10.9136 4.7164 1.7269 16 6 11.7882 3.8495 3.4704 17 7 12.8214 4.6632 3.4694 18 14 11.6304 2.5420 4.7953 19 1 12.2982 1.2954 4.3424 20 1 12.2739 3.0228 6.0443 21 1 10.1936 2.2687 5.0522 22 6 4.2955 2.4305 -0.0008 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 4.1605 -0.8592 0.0001 27 1 6.3881 3.9959 0.0872 28 1 7.2902 2.8500 -0.9332 29 1 8.9973 4.0694 0.7583 30 1 9.0849 3.1448 3.4255 31 1 9.9865 1.9988 2.4046 32 1 13.5009 4.5852 4.1572 33 1 3.9212 3.4436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328952713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = -38.739155 kcal Electronic energy + Delta-G solvation = -19120.241912 eV Core-core repulsion = 15762.484938 eV Total energy + Delta-G solvation = -3357.756973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58323 -40.06041 -38.96833 -36.44727 -34.51293 -33.58393 -32.44907 -30.68196 -29.21844 -27.95406 -26.82854 -23.37229 -22.52582 -21.28186 -20.48281 -20.08934 -18.27370 -17.50551 -17.03027 -16.49554 -16.26902 -16.19023 -15.47598 -15.02195 -14.62220 -14.37724 -13.88337 -13.75570 -13.36975 -13.17828 -12.93347 -12.84240 -12.42448 -12.31745 -11.97275 -11.22897 -11.11751 -10.95091 -10.83590 -10.39906 -10.06895 -9.98833 -9.58874 -9.36239 -8.88598 -8.86576 -8.33768 -6.28949 -4.32273 1.19433 1.95809 2.09795 2.73150 2.90764 3.11604 3.22194 3.29023 3.36928 3.62157 4.26896 4.40187 4.50367 4.80559 4.84589 4.90708 4.93052 4.97909 5.04405 5.06758 5.27194 5.32027 5.53425 6.21074 6.32703 6.51934 6.69088 6.95585 7.01987 7.26404 7.44076 7.72056 7.96889 8.34266 8.60203 8.72865 9.30278 10.82721 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.003224 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.392424 B = 8682.711947 C = 8928.240724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.549 3.451 4 O -0.526 6.526 5 C -0.289 4.289 6 C 0.093 3.907 7 N -0.261 5.261 8 N -0.338 5.338 9 C 0.106 3.894 10 C 0.487 3.513 11 O -0.527 6.527 12 N -0.700 5.700 13 C 0.223 3.777 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.261 1.261 22 C 0.141 3.859 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.196 0.804 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.398 0.602 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.269 0.731 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.972 -5.379 -9.702 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.395 3.605 4 O -0.416 6.416 5 C -0.303 4.303 6 C -0.097 4.097 7 N -0.079 5.079 8 N -0.114 5.114 9 C -0.019 4.019 10 C 0.269 3.731 11 O -0.404 6.404 12 N -0.350 5.350 13 C 0.101 3.899 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.012 4.012 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.213 0.787 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.232 0.768 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.796 -5.890 -9.033 21.670 hybrid contribution -0.822 0.093 0.479 0.956 sum -19.618 -5.798 -8.555 22.173 Atomic orbital electron populations 1.23236 0.76239 1.03547 1.02494 1.86543 1.23230 1.32716 1.84697 1.19981 0.87493 0.81171 0.71873 1.90825 1.66791 1.36009 1.47951 1.19177 0.90507 0.93596 1.26973 1.24217 0.88814 1.00081 0.96542 1.77460 1.21509 0.86893 1.22043 1.48032 1.04643 1.05655 1.53103 1.21803 0.86205 0.92712 1.01169 1.20248 0.82840 0.83738 0.86291 1.90763 1.72980 1.30115 1.46496 1.46114 1.22094 1.35241 1.31561 1.19536 0.89211 0.96867 0.84321 1.21049 1.04886 1.17969 1.14545 0.90141 1.24787 0.94584 0.95761 0.97398 1.69873 1.10839 1.37334 1.34656 0.86819 0.79447 0.82018 0.81426 1.19755 1.20812 1.18567 1.22929 0.83489 1.00009 0.94754 0.88132 0.91948 0.91980 0.78734 0.85316 0.86104 0.76785 0.95583 0.95922 0.92147 0.79159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.84 10.41 -40.64 -0.42 -4.27 16 3 C 0.55 6.95 7.95 34.41 0.27 7.22 16 4 O -0.53 -7.62 16.69 -19.28 -0.32 -7.94 16 5 C -0.29 -3.65 6.13 -105.08 -0.64 -4.29 16 6 C 0.09 1.19 11.87 -16.96 -0.20 0.99 16 7 N -0.26 -4.05 11.56 30.87 0.36 -3.69 16 8 N -0.34 -4.49 3.37 -61.97 -0.21 -4.70 16 9 C 0.11 1.19 6.97 -5.19 -0.04 1.16 16 10 C 0.49 8.43 7.86 -10.98 -0.09 8.35 16 11 O -0.53 -11.70 15.71 5.56 0.09 -11.61 16 12 N -0.70 -12.83 5.55 -61.47 -0.34 -13.17 16 13 C 0.22 5.24 4.50 -5.19 -0.02 5.21 16 14 C -0.55 -14.44 9.83 -34.44 -0.34 -14.78 16 15 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 18 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.14 1.63 11.25 -16.55 -0.19 1.44 16 23 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.20 1.91 8.06 -52.49 -0.42 1.48 16 27 H 0.13 0.90 8.06 -51.93 -0.42 0.48 16 28 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.40 6.04 8.32 -40.82 -0.34 5.70 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.19 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -36.16 303.83 -4.08 -40.24 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.64 Total: 0.50 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.27 Total: 8.74 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.58 Total: -46.66 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.66 Total: -23.82 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.16 -4.08 -40.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328952713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.498 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds