Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34756 * 116.99855 * 2 1 4 4 O 1.21524 * 120.00217 * 0.02562 * 3 2 1 5 5 C 1.47284 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.41348 * 126.42657 * 359.97438 * 5 3 2 7 7 N 1.30434 * 108.00880 * 179.77968 * 6 5 3 8 8 N 1.39926 * 108.92362 * 0.37599 * 7 6 5 9 9 C 1.46499 * 125.74769 * 179.87532 * 8 7 6 10 10 C 1.50701 * 109.46992 * 304.69337 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48505 * 109.46876 * 210.00288 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 C 1.34227 * 108.50903 * 359.61182 * 8 7 6 23 23 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46852 * 299.99885 * 1 2 3 25 25 H 1.08996 * 109.47445 * 59.99768 * 1 2 3 26 26 H 1.07993 * 125.99695 * 359.97438 * 6 5 3 27 27 H 1.09002 * 109.47391 * 184.69328 * 9 8 7 28 28 H 1.09001 * 109.46813 * 64.69384 * 9 8 7 29 29 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 31 31 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 32 32 H 0.97009 * 119.99937 * 179.97438 * 17 16 14 33 33 H 1.08003 * 126.29422 * 180.22385 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5346 1.2778 -0.0006 6 6 4.4323 0.1859 -0.0006 7 7 5.6465 0.6622 -0.0060 8 7 5.5857 2.0601 -0.0008 9 6 6.7363 2.9669 -0.0018 10 6 7.6356 2.6385 1.1621 11 8 7.3442 1.7356 1.9176 12 7 8.7641 3.3475 1.3628 13 6 9.6385 3.0279 2.4939 14 6 10.8221 3.9608 2.4930 15 1 10.9136 4.7164 1.7269 16 6 11.7882 3.8495 3.4704 17 7 12.8214 4.6632 3.4694 18 14 11.6304 2.5420 4.7953 19 1 12.2982 1.2954 4.3424 20 1 12.2739 3.0228 6.0443 21 1 10.1936 2.2687 5.0522 22 6 4.2955 2.4305 -0.0008 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 4.1605 -0.8592 0.0001 27 1 6.3881 3.9959 0.0872 28 1 7.2902 2.8500 -0.9332 29 1 8.9973 4.0694 0.7583 30 1 9.0849 3.1448 3.4255 31 1 9.9865 1.9988 2.4046 32 1 13.5009 4.5852 4.1572 33 1 3.9212 3.4436 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328952713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = -66.407854 kcal Electronic energy + Delta-G solvation = -19121.441717 eV Core-core repulsion = 15762.484938 eV Total energy + Delta-G solvation = -3358.956778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53197 -40.99841 -40.36484 -37.34509 -36.23827 -34.66437 -34.35925 -31.62438 -30.66658 -29.03668 -27.89524 -24.50329 -24.01918 -22.52902 -21.48002 -21.34755 -19.49369 -18.91527 -17.93480 -17.91200 -17.30762 -17.26618 -16.84821 -16.32350 -16.09903 -15.65566 -15.21731 -14.65450 -14.62190 -14.41751 -14.25375 -14.05540 -13.91932 -13.27693 -13.09529 -12.97549 -12.72538 -12.16723 -11.96895 -11.72796 -11.67149 -11.38010 -11.22999 -10.93747 -10.55774 -10.00364 -9.86230 -8.41629 -6.48170 0.28803 1.02365 1.19091 1.30624 1.34038 1.44977 1.58588 1.93287 2.18318 2.25702 2.33987 2.94142 3.54036 3.66433 3.81189 4.00678 4.03389 4.15740 4.38037 4.40687 4.43248 4.61880 4.75936 4.79938 4.99824 5.23856 5.34411 5.42678 5.43953 5.67277 6.06432 6.49695 6.53060 6.75244 6.81593 7.13453 7.33442 8.72761 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.003224 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.392424 B = 8682.711947 C = 8928.240724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.552 3.448 4 O -0.549 6.549 5 C -0.308 4.308 6 C 0.097 3.903 7 N -0.312 5.312 8 N -0.347 5.347 9 C 0.115 3.885 10 C 0.485 3.515 11 O -0.579 6.579 12 N -0.698 5.698 13 C 0.234 3.766 14 C -0.544 4.544 15 H 0.066 0.934 16 C 0.028 3.972 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.263 1.263 22 C 0.153 3.847 23 H 0.132 0.868 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.215 0.785 27 H 0.181 0.819 28 H 0.152 0.848 29 H 0.415 0.585 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.272 0.728 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.501 -5.436 -10.431 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.276 6.276 3 C 0.399 3.601 4 O -0.442 6.442 5 C -0.321 4.321 6 C -0.092 4.092 7 N -0.130 5.130 8 N -0.124 5.124 9 C -0.008 4.008 10 C 0.271 3.729 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.110 3.890 14 C -0.582 4.582 15 H 0.084 0.916 16 C -0.173 4.173 17 N -0.568 5.568 18 Si 0.758 3.242 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.188 1.188 22 C 0.001 3.999 23 H 0.150 0.850 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.231 0.769 27 H 0.198 0.802 28 H 0.170 0.830 29 H 0.252 0.748 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.337 -5.942 -9.800 23.344 hybrid contribution -0.427 0.107 0.649 0.784 sum -20.764 -5.835 -9.152 23.429 Atomic orbital electron populations 1.23551 0.74389 1.05696 1.02561 1.86533 1.25071 1.31786 1.84194 1.20006 0.87514 0.81329 0.71275 1.90807 1.67262 1.36764 1.49332 1.19386 0.90687 0.94105 1.27903 1.24592 0.88289 1.01222 0.95090 1.77393 1.22927 0.88560 1.24087 1.48168 1.05584 1.05186 1.53456 1.22022 0.85155 0.94681 0.98979 1.21243 0.82453 0.82159 0.87073 1.90742 1.74070 1.32235 1.48818 1.45879 1.22174 1.36197 1.30644 1.19070 0.88877 0.95254 0.85810 1.21282 1.05569 1.17660 1.13701 0.91616 1.25547 0.94491 0.97614 0.99603 1.69969 1.11844 1.39107 1.35868 0.85920 0.79201 0.79792 0.79316 1.19226 1.19885 1.18760 1.23505 0.82670 1.01248 0.92525 0.85014 0.92137 0.91691 0.76857 0.80183 0.83034 0.74837 0.97072 0.97391 0.91854 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.36 -7.25 10.41 -56.67 -0.59 -7.84 16 3 C 0.55 13.20 7.95 70.20 0.56 13.76 16 4 O -0.55 -15.17 16.69 19.76 0.33 -14.84 16 5 C -0.31 -7.26 6.13 -20.16 -0.12 -7.39 16 6 C 0.10 2.39 11.87 85.67 1.02 3.41 16 7 N -0.31 -9.33 11.56 -56.25 -0.65 -9.98 16 8 N -0.35 -8.39 3.37 -349.98 -1.18 -9.57 16 9 C 0.11 2.19 6.97 85.63 0.60 2.79 16 10 C 0.49 16.01 7.86 87.66 0.69 16.70 16 11 O -0.58 -25.48 15.71 -3.03 -0.05 -25.53 16 12 N -0.70 -24.64 5.55 -466.78 -2.59 -27.23 16 13 C 0.23 10.95 4.50 85.63 0.38 11.34 16 14 C -0.54 -28.79 9.83 25.60 0.25 -28.54 16 15 H 0.07 3.59 7.84 -2.91 -0.02 3.57 16 16 C 0.03 1.55 5.47 84.66 0.46 2.01 16 17 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 18 Si 0.93 43.60 27.47 68.60 1.88 45.48 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 22 C 0.15 3.12 11.25 84.30 0.95 4.07 16 23 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.21 3.99 8.06 -2.91 -0.02 3.96 16 27 H 0.18 1.57 8.06 -2.39 -0.02 1.55 16 28 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.41 11.77 8.32 -92.71 -0.77 11.00 16 30 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 31 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 32 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 33 H 0.23 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -79.84 303.83 3.76 -76.07 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.32 Total: 7.70 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.98 Total: 19.77 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.12 Total: -100.81 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.31 Total: -48.21 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -79.84 3.76 -76.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328952713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.666 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds