Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47496 * 2 1 4 4 C 1.35859 * 126.18380 * 269.98093 * 3 2 1 5 5 N 1.30158 * 109.05768 * 179.74026 * 4 3 2 6 6 C 1.35749 * 108.98795 * 0.44516 * 5 4 3 7 7 C 1.47239 * 126.22596 * 179.81976 * 6 5 4 8 8 O 1.21652 * 119.99731 * 174.28007 * 7 6 5 9 9 N 1.34776 * 119.99882 * 354.00800 * 7 6 5 10 10 C 1.36956 * 119.99953 * 173.68789 * 9 7 6 11 11 H 1.08004 * 119.99685 * 14.48139 * 10 9 7 12 12 C 1.38976 * 119.99837 * 194.47887 * 10 9 7 13 13 N 1.31406 * 120.00226 * 27.37675 * 12 10 9 14 14 Si 1.86805 * 119.99718 * 207.37293 * 12 10 9 15 15 H 1.48494 * 109.47234 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.46861 * 120.00452 * 14 12 10 17 17 H 1.48499 * 109.47211 * 240.00095 * 14 12 10 18 18 C 1.46496 * 120.00050 * 353.68830 * 9 7 6 19 19 C 1.50706 * 109.47149 * 87.29716 * 18 9 7 20 20 O 1.20826 * 119.99973 * 0.02562 * 19 18 9 21 21 O 1.34225 * 119.99860 * 180.02562 * 19 18 9 22 22 C 1.35943 * 126.18018 * 89.99918 * 3 2 1 23 23 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46796 * 300.00020 * 1 2 3 25 25 H 1.08994 * 109.47450 * 59.99574 * 1 2 3 26 26 H 1.09002 * 109.46956 * 240.00413 * 2 1 3 27 27 H 1.09003 * 109.47605 * 120.00294 * 2 1 3 28 28 H 1.08004 * 125.47286 * 359.97438 * 4 3 2 29 29 H 0.97000 * 120.00265 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.47332 * 207.29773 * 18 9 7 31 31 H 1.08995 * 109.47131 * 327.29912 * 18 9 7 32 32 H 0.96700 * 116.99874 * 180.02562 * 21 19 18 33 33 H 1.07998 * 126.61645 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2861 2.1372 -1.0966 5 7 2.6954 3.3118 -0.7133 6 6 2.7155 3.3515 0.6435 7 6 3.1209 4.4974 1.4746 8 8 2.9971 4.4458 2.6837 9 7 3.6342 5.6012 0.8961 10 6 3.8907 6.7141 1.6520 11 1 3.9077 6.6428 2.7296 12 6 4.1291 7.9350 1.0324 13 7 3.6115 8.1843 -0.1494 14 14 5.1853 9.2219 1.8798 15 1 5.6454 8.6992 3.1914 16 1 6.3633 9.5328 1.0305 17 1 4.3875 10.4565 2.0907 18 6 3.9179 5.6105 -0.5411 19 6 2.6808 6.0268 -1.2945 20 8 1.6666 6.2893 -0.6926 21 8 2.7059 6.1061 -2.6342 22 6 2.2859 2.1378 1.0973 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1735 1.8165 -2.1217 29 1 3.7776 9.0366 -0.5817 30 1 4.7236 6.3150 -0.7479 31 1 4.2179 4.6120 -0.8587 32 1 1.8883 6.3778 -3.0733 33 1 2.1797 1.8365 2.1289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597916557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -39.936558 kcal Electronic energy + Delta-G solvation = -20970.067151 eV Core-core repulsion = 17612.258255 eV Total energy + Delta-G solvation = -3357.808897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67743 -38.92471 -37.66691 -34.94463 -34.81657 -34.15579 -31.66949 -30.12310 -29.10339 -27.36441 -25.21132 -23.74410 -22.08740 -20.70469 -20.59437 -18.95741 -17.12175 -16.80465 -16.53499 -15.64276 -15.44008 -15.00925 -14.78607 -14.28378 -14.20473 -13.90200 -13.61346 -13.44846 -13.03502 -12.52261 -12.47423 -12.19478 -11.60091 -11.58850 -11.53525 -11.37827 -10.87538 -10.34223 -10.21908 -10.00999 -9.56036 -9.32875 -9.28834 -8.80469 -8.55205 -8.09688 -7.75088 -6.38213 -3.72216 2.18541 2.89687 2.99808 3.26663 3.31219 3.39745 4.02307 4.12001 4.36984 4.47835 4.60999 4.77776 4.83117 4.93732 5.04984 5.08855 5.29537 5.41460 5.43752 5.82306 5.83740 6.05437 6.43410 6.48775 6.72711 6.87637 7.01286 7.39900 7.62594 7.89434 8.10869 8.29964 8.53733 9.19344 9.37648 9.55611 10.02120 10.69589 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.006492 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.926512 B = 4311.901470 C = 4987.142143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.465 5.465 4 C 0.173 3.827 5 N -0.468 5.468 6 C -0.019 4.019 7 C 0.528 3.472 8 O -0.587 6.587 9 N -0.410 5.410 10 C -0.308 4.308 11 H 0.111 0.889 12 C 0.032 3.968 13 N -0.861 5.861 14 Si 0.923 3.077 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.283 1.283 18 C 0.152 3.848 19 C 0.517 3.483 20 O -0.512 6.512 21 O -0.537 6.537 22 C 0.002 3.998 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.202 0.798 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.385 0.615 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 -14.271 -6.208 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.150 5.150 4 C -0.109 4.109 5 N -0.188 5.188 6 C -0.148 4.148 7 C 0.317 3.683 8 O -0.472 6.472 9 N -0.127 5.127 10 C -0.435 4.435 11 H 0.128 0.872 12 C -0.173 4.173 13 N -0.499 5.499 14 Si 0.749 3.251 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.209 1.209 18 C 0.026 3.974 19 C 0.358 3.642 20 O -0.397 6.397 21 O -0.347 6.347 22 C -0.134 4.134 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.240 0.760 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.531 -13.623 -5.861 14.909 hybrid contribution -0.590 0.321 0.216 0.706 sum -2.121 -13.301 -5.645 14.604 Atomic orbital electron populations 1.22178 0.94323 1.02823 1.03560 1.21802 0.95495 0.80203 1.04416 1.45539 1.49822 1.12640 1.06994 1.25101 1.04497 0.88084 0.93231 1.70790 1.18440 1.18281 1.11332 1.21115 1.08366 0.95512 0.89839 1.16665 0.82344 0.82804 0.86483 1.90606 1.60211 1.82741 1.13596 1.43297 1.52449 1.11451 1.05514 1.19752 1.45564 0.85525 0.92702 0.87176 1.25252 0.97490 0.97921 0.96615 1.69965 1.38347 1.24492 1.17093 0.85930 0.79694 0.79757 0.79703 1.18990 1.20504 1.20913 1.20739 0.93595 1.02099 0.80990 1.23254 0.90614 0.71576 0.78795 1.90549 1.34558 1.45928 1.68701 1.84510 1.43372 1.82827 1.24038 1.22553 1.06106 0.92195 0.92539 0.90784 0.91663 0.91765 0.88972 0.89149 0.78124 0.92008 0.87761 0.88066 0.76004 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.15 0.38 -0.93 16 2 C 0.10 0.84 6.85 -4.05 -0.03 0.81 16 3 N -0.46 -6.27 2.74 -118.18 -0.32 -6.60 16 4 C 0.17 2.57 12.55 -89.91 -1.13 1.44 16 5 N -0.47 -9.36 6.89 -11.03 -0.08 -9.44 16 6 C -0.02 -0.43 6.56 -83.10 -0.54 -0.98 16 7 C 0.53 14.35 7.54 -12.60 -0.09 14.25 16 8 O -0.59 -17.23 16.51 5.23 0.09 -17.15 16 9 N -0.41 -11.41 2.13 -117.38 -0.25 -11.66 16 10 C -0.31 -8.98 9.34 -14.99 -0.14 -9.12 16 11 H 0.11 3.33 7.36 -52.48 -0.39 2.94 16 12 C 0.03 0.87 4.74 -17.46 -0.08 0.79 16 13 N -0.86 -23.96 9.24 55.50 0.51 -23.45 16 14 Si 0.92 21.06 29.63 -169.99 -5.04 16.02 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.15 3.77 4.79 -5.19 -0.02 3.75 16 19 C 0.52 12.93 4.93 36.01 0.18 13.11 16 20 O -0.51 -14.85 16.62 -18.75 -0.31 -15.16 16 21 O -0.54 -11.10 13.42 -39.25 -0.53 -11.62 16 22 C 0.00 0.03 11.30 -16.35 -0.18 -0.15 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.20 2.07 8.06 -52.48 -0.42 1.64 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.10 2.62 6.62 -51.93 -0.34 2.28 16 31 H 0.10 2.29 5.76 -51.93 -0.30 1.99 16 32 H 0.38 6.35 9.10 45.56 0.41 6.76 16 33 H 0.18 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 291.33 15.07 4.39 4.39 Total: -1.00 -37.88 291.33 -5.92 -43.80 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.71 Total: 7.90 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: -1.67 Total: 22.96 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.14 Total: -51.14 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.75 Total: -43.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -37.88 -5.92 -43.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597916557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.861 kcal (2) G-P(sol) polarization free energy of solvation -37.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds