Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47496 * 2 1 4 4 C 1.35859 * 126.18380 * 269.98093 * 3 2 1 5 5 N 1.30158 * 109.05768 * 179.74026 * 4 3 2 6 6 C 1.35749 * 108.98795 * 0.44516 * 5 4 3 7 7 C 1.47239 * 126.22596 * 179.81976 * 6 5 4 8 8 O 1.21652 * 119.99731 * 174.28007 * 7 6 5 9 9 N 1.34776 * 119.99882 * 354.00800 * 7 6 5 10 10 C 1.36956 * 119.99953 * 173.68789 * 9 7 6 11 11 H 1.08004 * 119.99685 * 14.48139 * 10 9 7 12 12 C 1.38976 * 119.99837 * 194.47887 * 10 9 7 13 13 N 1.31406 * 120.00226 * 27.37675 * 12 10 9 14 14 Si 1.86805 * 119.99718 * 207.37293 * 12 10 9 15 15 H 1.48494 * 109.47234 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.46861 * 120.00452 * 14 12 10 17 17 H 1.48499 * 109.47211 * 240.00095 * 14 12 10 18 18 C 1.46496 * 120.00050 * 353.68830 * 9 7 6 19 19 C 1.50706 * 109.47149 * 87.29716 * 18 9 7 20 20 O 1.20826 * 119.99973 * 0.02562 * 19 18 9 21 21 O 1.34225 * 119.99860 * 180.02562 * 19 18 9 22 22 C 1.35943 * 126.18018 * 89.99918 * 3 2 1 23 23 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46796 * 300.00020 * 1 2 3 25 25 H 1.08994 * 109.47450 * 59.99574 * 1 2 3 26 26 H 1.09002 * 109.46956 * 240.00413 * 2 1 3 27 27 H 1.09003 * 109.47605 * 120.00294 * 2 1 3 28 28 H 1.08004 * 125.47286 * 359.97438 * 4 3 2 29 29 H 0.97000 * 120.00265 * 179.97438 * 13 12 10 30 30 H 1.09004 * 109.47332 * 207.29773 * 18 9 7 31 31 H 1.08995 * 109.47131 * 327.29912 * 18 9 7 32 32 H 0.96700 * 116.99874 * 180.02562 * 21 19 18 33 33 H 1.07998 * 126.61645 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2861 2.1372 -1.0966 5 7 2.6954 3.3118 -0.7133 6 6 2.7155 3.3515 0.6435 7 6 3.1209 4.4974 1.4746 8 8 2.9971 4.4458 2.6837 9 7 3.6342 5.6012 0.8961 10 6 3.8907 6.7141 1.6520 11 1 3.9077 6.6428 2.7296 12 6 4.1291 7.9350 1.0324 13 7 3.6115 8.1843 -0.1494 14 14 5.1853 9.2219 1.8798 15 1 5.6454 8.6992 3.1914 16 1 6.3633 9.5328 1.0305 17 1 4.3875 10.4565 2.0907 18 6 3.9179 5.6105 -0.5411 19 6 2.6808 6.0268 -1.2945 20 8 1.6666 6.2893 -0.6926 21 8 2.7059 6.1061 -2.6342 22 6 2.2859 2.1378 1.0973 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1735 1.8165 -2.1217 29 1 3.7776 9.0366 -0.5817 30 1 4.7236 6.3150 -0.7479 31 1 4.2179 4.6120 -0.8587 32 1 1.8883 6.3778 -3.0733 33 1 2.1797 1.8365 2.1289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597916557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -66.526122 kcal Electronic energy + Delta-G solvation = -20971.220161 eV Core-core repulsion = 17612.258255 eV Total energy + Delta-G solvation = -3358.961907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.99251 -40.86253 -39.63560 -36.91815 -36.17396 -35.83231 -33.71601 -31.17039 -30.53350 -29.33615 -27.11544 -24.75207 -23.68029 -22.59387 -21.75074 -20.62338 -18.94928 -18.59451 -18.22477 -17.47803 -17.23443 -16.35892 -16.30329 -16.06211 -15.86810 -15.31806 -15.09036 -14.68893 -14.54449 -14.34837 -13.66896 -13.53574 -13.44765 -13.26035 -12.91762 -12.67511 -12.37099 -12.14725 -12.10273 -11.94975 -11.39954 -11.04135 -10.83781 -10.62924 -10.50822 -9.86685 -9.49890 -8.45825 -5.89939 0.72525 1.37652 1.43006 1.59639 1.63629 1.85861 2.07408 2.27421 2.53976 2.67848 3.05568 3.26560 3.65124 3.85287 3.97587 4.15908 4.25616 4.46491 4.57524 4.62419 4.75171 4.78200 4.86986 5.09972 5.19479 5.25631 5.46155 5.57245 5.99674 6.12386 6.28029 6.45376 6.95934 7.12501 7.34854 7.66986 7.97696 8.61522 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.006492 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.926512 B = 4311.901470 C = 4987.142143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.451 5.451 4 C 0.196 3.804 5 N -0.509 5.509 6 C -0.074 4.074 7 C 0.515 3.485 8 O -0.630 6.630 9 N -0.427 5.427 10 C -0.353 4.353 11 H 0.082 0.918 12 C 0.000 4.000 13 N -0.880 5.880 14 Si 0.996 3.004 15 H -0.269 1.269 16 H -0.258 1.258 17 H -0.280 1.280 18 C 0.158 3.842 19 C 0.529 3.471 20 O -0.558 6.558 21 O -0.521 6.521 22 C 0.024 3.976 23 H 0.104 0.896 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.253 0.747 29 H 0.276 0.724 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.407 0.593 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -16.161 -8.209 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.133 5.133 4 C -0.088 4.088 5 N -0.229 5.229 6 C -0.201 4.201 7 C 0.306 3.694 8 O -0.518 6.518 9 N -0.143 5.143 10 C -0.480 4.480 11 H 0.100 0.900 12 C -0.203 4.203 13 N -0.518 5.518 14 Si 0.818 3.182 15 H -0.194 1.194 16 H -0.183 1.183 17 H -0.205 1.205 18 C 0.032 3.968 19 C 0.372 3.628 20 O -0.447 6.447 21 O -0.332 6.332 22 C -0.115 4.115 23 H 0.122 0.878 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.125 0.875 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.265 0.735 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.476 -15.546 -7.934 17.516 hybrid contribution -0.721 0.724 0.726 1.253 sum -2.197 -14.822 -7.208 16.628 Atomic orbital electron populations 1.22172 0.93900 1.04370 1.02135 1.22317 0.95708 0.77119 1.07226 1.45838 1.48074 1.14205 1.05219 1.25989 1.01150 0.86486 0.95175 1.70576 1.20806 1.21343 1.10160 1.20570 1.12862 0.95640 0.91030 1.17476 0.81191 0.83981 0.86730 1.90530 1.61837 1.83913 1.15556 1.43442 1.52988 1.11331 1.06588 1.19699 1.48925 0.87309 0.92061 0.89995 1.26120 0.97453 0.99295 0.97422 1.70023 1.38349 1.25252 1.18135 0.84882 0.78153 0.76526 0.78636 1.19377 1.18287 1.20546 1.20750 0.93298 1.02900 0.79815 1.23134 0.89745 0.70259 0.79650 1.90528 1.36103 1.48145 1.69972 1.84427 1.44700 1.82214 1.21908 1.22633 1.03582 0.91237 0.94082 0.87771 0.93959 0.92316 0.85141 0.87494 0.73157 0.91442 0.88695 0.86077 0.73522 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 71.98 0.74 -1.23 16 2 C 0.10 1.12 6.85 86.38 0.59 1.71 16 3 N -0.45 -10.75 2.74 -527.80 -1.45 -12.19 16 4 C 0.20 5.15 12.55 180.10 2.26 7.41 16 5 N -0.51 -19.83 6.89 -188.83 -1.30 -21.13 16 6 C -0.07 -3.33 6.56 40.50 0.27 -3.06 16 7 C 0.52 29.46 7.54 86.61 0.65 30.11 16 8 O -0.63 -39.41 16.51 -4.20 -0.07 -39.48 16 9 N -0.43 -24.88 2.13 -643.51 -1.37 -26.25 16 10 C -0.35 -21.67 9.34 84.07 0.79 -20.89 16 11 H 0.08 5.34 7.36 -2.91 -0.02 5.31 16 12 C 0.00 0.00 4.74 84.93 0.40 0.40 16 13 N -0.88 -49.62 9.24 21.67 0.20 -49.42 16 14 Si 1.00 44.05 29.63 68.60 2.03 46.08 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.16 8.02 4.79 85.64 0.41 8.43 16 19 C 0.53 26.64 4.93 71.24 0.35 26.99 16 20 O -0.56 -33.10 16.62 21.96 0.37 -32.73 16 21 O -0.52 -20.82 13.42 -51.37 -0.69 -21.51 16 22 C 0.02 0.83 11.30 83.65 0.95 1.78 16 23 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.25 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.10 4.89 6.62 -2.39 -0.02 4.88 16 31 H 0.12 5.56 5.76 -2.39 -0.01 5.55 16 32 H 0.41 12.65 9.10 -74.06 -0.67 11.97 16 33 H 0.19 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -88.40 291.33 5.60 -82.80 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.48 Total: 22.19 kcal Atomic # 6 Polarization: 44.25 SS G_CDS: 7.40 Total: 51.65 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.92 Total: -109.00 kcal Atomic # 8 Polarization: -93.33 SS G_CDS: -0.39 Total: -93.73 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -88.40 5.60 -82.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597916557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.269 kcal (2) G-P(sol) polarization free energy of solvation -88.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds