Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35699 * 117.00274 * 2 1 4 4 C 1.39260 * 120.14580 * 179.97438 * 3 2 1 5 5 C 1.38636 * 117.92068 * 179.97438 * 4 3 2 6 6 C 1.38762 * 118.02370 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.01513 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47043 * 94.99892 * 7 6 5 9 9 C 1.36937 * 119.99598 * 90.00003 * 8 7 6 10 10 H 1.08001 * 120.00082 * 343.11023 * 9 8 7 11 11 C 1.38810 * 119.99715 * 162.83069 * 9 8 7 12 12 N 1.31616 * 120.00338 * 336.49937 * 11 9 8 13 13 Si 1.86805 * 120.00028 * 156.49897 * 11 9 8 14 14 H 1.48507 * 109.47058 * 90.00020 * 13 11 9 15 15 H 1.48495 * 109.47511 * 210.00088 * 13 11 9 16 16 H 1.48496 * 109.47133 * 330.00323 * 13 11 9 17 17 C 1.46494 * 120.00416 * 270.00115 * 8 7 6 18 18 C 1.50705 * 109.47021 * 276.09907 * 17 8 7 19 19 O 1.20816 * 119.99960 * 359.97438 * 18 17 8 20 20 O 1.34225 * 119.99957 * 179.97438 * 18 17 8 21 21 N 1.31814 * 119.96842 * 0.27914 * 6 5 4 22 22 N 1.28348 * 122.26327 * 359.41726 * 21 6 5 23 23 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 299.99688 * 1 2 3 25 25 H 1.09001 * 109.47117 * 60.00336 * 1 2 3 26 26 H 1.08004 * 121.03516 * 359.95628 * 4 3 2 27 27 H 1.08003 * 120.98789 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.46767 * 335.00489 * 7 6 5 29 29 H 1.08998 * 109.46945 * 215.00217 * 7 6 5 30 30 H 0.97006 * 120.00273 * 179.97438 * 12 11 9 31 31 H 1.09003 * 109.46922 * 36.09135 * 17 8 7 32 32 H 1.08998 * 109.47165 * 156.09562 * 17 8 7 33 33 H 0.96702 * 117.00318 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4356 1.2854 0.0005 5 6 4.0166 2.5441 0.0000 6 6 3.1776 3.6494 -0.0017 7 6 3.7613 5.0388 -0.0029 8 7 3.8401 5.5341 -1.3794 9 6 2.7876 6.2232 -1.9203 10 1 1.8135 6.1724 -1.4568 11 6 2.9742 6.9918 -3.0610 12 7 4.1737 7.4423 -3.3622 13 14 1.5229 7.3868 -4.1688 14 1 0.8884 8.6526 -3.7210 15 1 1.9952 7.5381 -5.5685 16 1 0.5312 6.2838 -4.0976 17 6 5.0447 5.2922 -2.1771 18 6 6.0736 6.3486 -1.8663 19 8 5.8258 7.2148 -1.0614 20 8 7.2653 6.3270 -2.4837 21 7 1.8700 3.4836 0.0030 22 7 1.3269 2.3207 -0.0020 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.0423 0.3919 0.0017 27 1 5.0903 2.6610 -0.0001 28 1 4.7605 5.0135 0.4318 29 1 3.1256 5.7004 0.5855 30 1 4.3041 7.9790 -4.1596 31 1 5.4490 4.3091 -1.9357 32 1 4.7926 5.3311 -3.2368 33 1 7.8925 7.0255 -2.2519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599558513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -63.236096 kcal Electronic energy + Delta-G solvation = -20361.140076 eV Core-core repulsion = 17002.320835 eV Total energy + Delta-G solvation = -3358.819241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11635 -40.52925 -39.45285 -37.59087 -36.23935 -34.44340 -33.68729 -32.33148 -29.46592 -28.47371 -27.93518 -25.17187 -24.70649 -23.29532 -21.81170 -19.53664 -18.88287 -18.54370 -18.42164 -17.33738 -17.22292 -17.00744 -16.23602 -16.00548 -15.59118 -15.55382 -15.27073 -14.98869 -14.71878 -14.18709 -13.53103 -13.37907 -12.97551 -12.87928 -12.67525 -12.52948 -12.39402 -12.34443 -12.11126 -12.01238 -11.82194 -11.16660 -11.06743 -10.58350 -10.44894 -9.98459 -9.04606 -7.99378 -5.31096 -0.07986 0.10858 1.43691 1.46983 1.57408 1.98184 2.03581 2.40976 2.64418 2.81732 3.13903 3.28062 3.55317 3.62705 3.81806 4.05014 4.24212 4.39455 4.41340 4.52974 4.57776 4.74025 4.76848 4.91763 5.10014 5.10585 5.24215 5.28521 5.67942 6.04735 6.18056 6.21212 7.01763 7.60791 7.78301 7.82567 8.10246 9.09619 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.006403 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.439672 B = 4372.072949 C = 5439.036766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.235 3.765 4 C -0.126 4.126 5 C -0.071 4.071 6 C 0.033 3.967 7 C 0.201 3.799 8 N -0.569 5.569 9 C -0.254 4.254 10 H 0.071 0.929 11 C -0.042 4.042 12 N -0.922 5.922 13 Si 0.960 3.040 14 H -0.291 1.291 15 H -0.288 1.288 16 H -0.280 1.280 17 C 0.187 3.813 18 C 0.482 3.518 19 O -0.552 6.552 20 O -0.533 6.533 21 N -0.233 5.233 22 N -0.333 5.333 23 H 0.134 0.866 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.192 0.808 27 H 0.191 0.809 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.251 0.749 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -14.918 5.226 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.213 6.213 3 C 0.049 3.951 4 C -0.155 4.155 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.073 3.927 8 N -0.288 5.288 9 C -0.384 4.384 10 H 0.089 0.911 11 C -0.237 4.237 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.219 1.219 15 H -0.214 1.214 16 H -0.205 1.205 17 C 0.058 3.942 18 C 0.323 3.677 19 O -0.441 6.441 20 O -0.345 6.345 21 N -0.076 5.076 22 N -0.188 5.188 23 H 0.152 0.848 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.209 0.791 27 H 0.208 0.792 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.899 -14.530 5.216 15.464 hybrid contribution 0.586 0.893 -0.629 1.239 sum 1.485 -13.638 4.587 14.465 Atomic orbital electron populations 1.23142 0.75816 1.05140 1.02117 1.86193 1.24284 1.22874 1.87914 1.21840 0.92238 0.87088 0.93956 1.21907 0.91520 1.00879 1.01172 1.22573 1.03576 0.90211 0.93628 1.23966 0.91228 1.00089 0.96561 1.19625 0.99218 0.87648 0.86184 1.43951 1.13598 1.61198 1.10047 1.19407 0.88994 1.22317 1.07692 0.91141 1.25378 0.98637 0.98004 1.01703 1.70011 1.22508 1.37520 1.26825 0.85398 0.79720 0.77513 0.78494 1.21853 1.21353 1.20507 1.20264 0.83344 0.92454 0.98132 1.25230 0.80178 0.86712 0.75562 1.90507 1.78357 1.38314 1.36885 1.84538 1.27143 1.55636 1.67157 1.72671 1.13034 1.13435 1.08420 1.72944 1.33343 0.94928 1.17555 0.84849 0.92547 0.93166 0.79102 0.79198 0.89434 0.92734 0.93988 0.88522 0.89449 0.73909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.40 113.37 1.18 1.84 16 2 O -0.31 -7.78 10.49 -90.19 -0.95 -8.73 16 3 C 0.24 6.95 7.57 84.86 0.64 7.59 16 4 C -0.13 -2.92 10.16 22.61 0.23 -2.69 16 5 C -0.07 -1.79 9.85 22.49 0.22 -1.57 16 6 C 0.03 1.14 6.45 42.69 0.28 1.41 16 7 C 0.20 7.85 5.96 85.63 0.51 8.36 16 8 N -0.57 -26.59 2.01 -710.70 -1.43 -28.02 16 9 C -0.25 -13.80 9.64 84.03 0.81 -12.99 16 10 H 0.07 3.96 7.93 -2.91 -0.02 3.94 16 11 C -0.04 -2.29 4.81 84.86 0.41 -1.89 16 12 N -0.92 -52.07 9.38 21.65 0.20 -51.87 16 13 Si 0.96 45.77 29.62 68.60 2.03 47.80 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 15 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 C 0.19 8.00 5.49 85.64 0.47 8.47 16 18 C 0.48 21.38 6.54 71.24 0.47 21.84 16 19 O -0.55 -28.73 16.81 21.99 0.37 -28.36 16 20 O -0.53 -19.33 13.42 -51.37 -0.69 -20.02 16 21 N -0.23 -9.40 11.42 -47.59 -0.54 -9.95 16 22 N -0.33 -12.18 10.41 -170.22 -1.77 -13.96 16 23 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.05 1.13 8.11 -2.39 -0.02 1.12 16 26 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.19 3.18 8.06 -2.91 -0.02 3.15 16 28 H 0.09 2.92 7.98 -2.39 -0.02 2.90 16 29 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 30 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.10 3.18 8.12 -2.39 -0.02 3.16 16 32 H 0.09 4.21 6.46 -2.39 -0.02 4.20 16 33 H 0.40 11.30 9.10 -74.06 -0.67 10.63 16 Total: -1.00 -74.08 298.16 2.91 -71.17 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.47 Total: 11.54 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 5.21 Total: 30.38 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.54 Total: -103.79 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -1.27 Total: -57.11 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.08 2.91 -71.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599558513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.935 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds