Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 N 1.46500 * 109.47456 * 119.99966 * 2 1 3 5 5 C 1.46508 * 119.99855 * 300.00228 * 4 2 1 6 6 C 1.50704 * 109.46858 * 269.99621 * 5 4 2 7 7 H 1.08004 * 119.99864 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99985 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99867 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00109 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47109 * 59.99979 * 10 8 6 12 12 H 1.48496 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46912 * 300.00234 * 10 8 6 14 14 C 1.34774 * 120.00515 * 120.00077 * 4 2 1 15 15 O 1.21283 * 120.00315 * 180.02562 * 14 4 2 16 16 C 1.50704 * 119.99429 * 359.97438 * 14 4 2 17 17 C 1.50703 * 109.46698 * 180.02562 * 16 14 4 18 18 C 1.38425 * 122.53762 * 90.00158 * 17 16 14 19 19 C 1.33390 * 114.92123 * 179.97438 * 18 17 16 20 20 S 1.75891 * 109.59251 * 0.02562 * 19 18 17 21 21 C 1.33383 * 122.54063 * 269.97431 * 17 16 14 22 22 H 1.09001 * 109.47164 * 300.00140 * 1 2 3 23 23 H 1.09000 * 109.47535 * 60.00104 * 1 2 3 24 24 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47164 * 239.99860 * 2 1 3 26 26 H 1.09009 * 109.47100 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47267 * 299.99498 * 3 2 1 28 28 H 1.08997 * 109.47316 * 60.00416 * 3 2 1 29 29 H 1.08999 * 109.46951 * 29.99220 * 5 4 2 30 30 H 1.08994 * 109.47372 * 150.00041 * 5 4 2 31 31 H 0.97006 * 120.00003 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.47203 * 60.00330 * 16 14 4 33 33 H 1.09003 * 109.47454 * 299.99901 * 16 14 4 34 34 H 1.07997 * 122.54292 * 359.71157 * 18 17 16 35 35 H 1.08003 * 125.20243 * 179.97438 * 19 18 17 36 36 H 1.08000 * 125.20529 * 0.06732 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5268 6 6 2.7032 0.8019 2.9830 7 1 3.5428 1.0363 2.3453 8 6 2.5812 1.4109 4.2139 9 7 1.5586 1.1258 4.9902 10 14 3.8684 2.6410 4.7791 11 1 3.9235 3.7748 3.8218 12 1 3.5098 3.1482 6.1279 13 1 5.1955 1.9772 4.8372 14 6 2.7932 -1.7863 1.0726 15 8 3.1972 -2.3583 2.0629 16 6 3.1568 -2.3015 -0.2962 17 6 4.0228 -3.5271 -0.1579 18 6 3.4976 -4.8060 -0.0892 19 6 4.4018 -5.7792 0.0315 20 16 6.0168 -5.0830 0.0648 21 6 5.3535 -3.4617 -0.0929 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 0.6904 0.2975 2.4844 30 1 1.6238 -1.0225 3.2292 31 1 1.4729 1.5540 5.8564 32 1 3.7015 -1.5309 -0.8416 33 1 2.2483 -2.5587 -0.8408 34 1 2.4360 -5.0008 -0.1262 35 1 4.1767 -6.8333 0.0994 36 1 5.9347 -2.5522 -0.1301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -7.198654 kcal Electronic energy + Delta-G solvation = -18383.833674 eV Core-core repulsion = 15573.737614 eV Total energy + Delta-G solvation = -2810.096060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.45831 -37.61803 -35.77760 -32.84210 -31.05525 -30.74234 -28.37304 -26.81905 -26.54414 -23.46131 -22.38732 -21.21393 -18.83366 -17.99311 -17.24725 -16.63034 -16.42480 -15.38052 -14.86734 -14.43059 -14.05559 -13.45500 -13.37533 -13.01538 -12.85528 -12.42096 -12.36524 -12.25408 -11.97527 -11.66105 -11.55137 -11.36477 -11.15161 -10.90463 -10.83036 -10.67366 -10.49861 -10.34798 -9.99045 -9.52568 -8.92272 -8.58280 -8.39119 -8.15899 -7.60025 -6.00568 -4.03690 1.19797 1.83718 2.13630 2.87032 3.32699 3.37677 3.39728 3.50416 4.04443 4.47528 4.99543 5.12762 5.20812 5.30938 5.35326 5.44415 5.55342 5.60178 5.67210 5.71195 5.80290 6.02263 6.15805 6.19618 6.28564 6.37965 6.55765 6.61534 6.65310 6.97672 7.15975 7.51157 7.61912 7.96562 8.29148 8.50064 8.95390 9.17127 9.60328 11.07570 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.005629 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.242945 B = 4973.045337 C = 5753.204229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.506 3.494 15 O -0.533 6.533 16 C -0.085 4.085 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.216 4.216 20 S 0.077 5.923 21 C -0.196 4.196 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -7.474 -14.625 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.557 4.557 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.292 3.708 15 O -0.410 6.410 16 C -0.128 4.128 17 C -0.088 4.088 18 C -0.147 4.147 19 C -0.351 4.351 20 S 0.340 5.660 21 C -0.332 4.332 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.613 -8.339 -13.768 16.497 hybrid contribution -0.746 1.400 0.360 1.627 sum 2.867 -6.939 -13.407 15.366 Atomic orbital electron populations 1.22159 0.95659 1.01756 1.02429 1.20996 0.94079 0.94133 0.87994 1.22143 1.01311 0.95769 1.02283 1.48335 1.49348 1.26480 1.08561 1.19213 0.95800 0.94901 0.77319 1.21401 1.08870 1.23350 1.02058 0.92505 1.24920 0.95719 0.97146 0.96370 1.69921 1.29529 1.43394 1.10702 0.86625 0.82110 0.81305 0.77779 1.20287 1.21252 1.20302 1.20180 0.79404 0.81011 0.90229 1.90689 1.52863 1.57902 1.39500 1.20484 0.99725 0.95256 0.97329 1.18427 0.93021 0.94722 1.02622 1.20023 1.00696 0.91450 1.02528 1.25440 0.95354 1.03046 1.11308 1.84039 1.09149 0.99442 1.73332 1.25358 0.97780 1.00196 1.09851 0.91323 0.92308 0.92939 0.90734 0.92804 0.93311 0.90073 0.94849 0.94171 0.92775 0.88676 0.88712 0.84502 0.82146 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.17 37.15 0.34 -1.98 16 2 C 0.13 2.11 3.17 -67.93 -0.22 1.89 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.23 16 4 N -0.59 -12.34 2.39 -167.47 -0.40 -12.73 16 5 C 0.25 6.36 4.60 -5.19 -0.02 6.34 16 6 C -0.52 -14.40 7.83 -34.44 -0.27 -14.67 16 7 H 0.06 1.58 7.63 -52.48 -0.40 1.18 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.51 10.48 7.67 -10.98 -0.08 10.40 16 15 O -0.53 -13.63 15.61 5.56 0.09 -13.55 16 16 C -0.09 -1.27 4.27 -29.03 -0.12 -1.40 16 17 C -0.08 -1.16 4.29 -106.25 -0.46 -1.61 16 18 C -0.12 -1.64 9.98 -41.21 -0.41 -2.05 16 19 C -0.22 -2.76 11.23 29.04 0.33 -2.43 16 20 S 0.08 1.00 23.34 -107.50 -2.51 -1.51 16 21 C -0.20 -2.90 10.98 29.04 0.32 -2.58 16 22 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.96 5.77 -51.93 -0.30 0.66 16 26 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 29 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 30 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 1.24 7.76 -51.93 -0.40 0.83 16 33 H 0.09 1.16 7.78 -51.93 -0.40 0.76 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 36 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -32.86 314.01 -7.78 -40.64 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.03 Total: 0.13 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.38 Total: -8.72 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.34 Total: -38.62 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.86 -7.78 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.443 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds