Wall clock time and date at job start Mon Mar 30 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00235 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47143 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00016 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00036 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00291 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46927 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47484 * 119.99278 * 18 16 14 21 21 H 1.48506 * 109.47111 * 239.99802 * 18 16 14 22 22 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 24 24 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 25 25 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 26 26 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 29 29 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 30 30 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 31 31 H 1.08997 * 109.47311 * 300.00472 * 13 12 10 32 32 H 1.09004 * 109.46479 * 60.00537 * 13 12 10 33 33 H 0.97005 * 120.00433 * 179.97438 * 17 16 14 34 34 H 1.08005 * 120.01400 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6083 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 4.7855 -7.1747 -0.0012 14 6 3.9659 -8.4393 -0.0035 15 1 2.8873 -8.3837 -0.0046 16 6 4.5928 -9.6672 -0.0030 17 7 5.9062 -9.7349 -0.0012 18 14 3.5769 -11.2347 -0.0065 19 1 2.1327 -10.8886 -0.0088 20 1 3.8976 -12.0299 -1.2190 21 1 3.8924 -12.0319 1.2061 22 6 2.1970 -1.1972 -0.0005 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6554 2.1323 -0.0004 27 1 4.1167 2.1395 0.0010 28 1 2.8576 -3.5991 0.8882 29 1 2.8591 -3.5985 -0.8918 30 1 2.9306 -6.1415 -0.0034 31 1 5.4154 -7.1488 -0.8904 32 1 5.4133 -7.1497 0.8896 33 1 6.3474 -10.5989 -0.0005 34 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085565775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:58 Heat of formation + Delta-G solvation = -103.005374 kcal Electronic energy + Delta-G solvation = -19120.513322 eV Core-core repulsion = 15740.049594 eV Total energy + Delta-G solvation = -3380.463727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.76256 -40.34693 -38.85567 -37.48438 -34.27517 -32.64635 -32.41479 -30.57693 -29.05470 -27.09856 -26.37590 -23.29391 -22.26919 -21.82474 -19.91330 -18.29311 -17.57373 -17.07068 -16.61915 -16.47083 -15.59049 -15.37857 -15.18552 -14.70388 -14.48302 -14.31617 -14.07351 -13.77284 -13.49525 -13.30286 -12.67662 -12.24849 -12.24021 -12.03789 -11.79947 -11.70440 -11.36809 -11.06239 -10.99876 -10.91964 -10.36377 -9.44163 -9.18551 -9.06180 -8.80514 -8.28902 -8.00384 -6.21104 -4.28866 0.88320 1.05161 2.72156 3.15395 3.20884 3.27982 3.30791 3.31718 3.99694 4.17526 4.31629 4.46470 4.48551 4.77304 4.90323 4.96765 5.11293 5.15543 5.19202 5.25729 5.28252 5.40696 5.52290 5.76452 5.82646 5.96380 6.20966 6.44631 7.10908 7.23511 7.31740 7.44627 7.59323 7.90336 8.47948 8.69901 8.95268 9.37668 10.89069 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033151 B = 0.003385 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.414091 B = 8268.713481 C = 9087.377211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.136 4.136 4 C -0.113 4.113 5 C 0.064 3.936 6 F -0.130 7.130 7 C 0.107 3.893 8 O -0.278 6.278 9 C 0.039 3.961 10 C 0.499 3.501 11 O -0.530 6.530 12 N -0.707 5.707 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.188 4.188 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.392 0.608 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 20.176 0.018 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.044 3.956 6 F -0.108 7.108 7 C 0.060 3.940 8 O -0.190 6.190 9 C -0.040 4.040 10 C 0.282 3.718 11 O -0.406 6.406 12 N -0.357 5.357 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.207 4.207 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.520 20.078 0.018 23.148 hybrid contribution -0.864 -1.072 0.004 1.377 sum -12.384 19.006 0.022 22.685 Atomic orbital electron populations 1.20818 0.90458 1.03173 1.02725 1.19763 0.96444 0.92238 0.97296 1.20771 0.92914 0.97977 1.03733 1.20988 0.94843 0.96260 1.01045 1.17012 0.77447 0.91726 1.09440 1.91531 1.27958 1.97172 1.94172 1.19135 0.91071 0.85743 0.98058 1.86277 1.33845 1.11043 1.87824 1.22705 0.94431 0.83462 1.03402 1.19833 0.88953 0.84091 0.78918 1.90731 1.15089 1.85710 1.49110 1.46347 1.11117 1.05601 1.72656 1.19186 0.89451 0.80270 0.98069 1.21230 0.93241 0.90354 1.53498 0.91732 1.24961 0.95052 0.99400 0.94619 1.69985 1.07836 1.25622 1.48667 0.86337 0.80050 0.82563 0.77801 1.19615 1.20753 1.20758 1.21087 0.91723 0.99682 1.08176 0.90716 0.91167 0.91184 0.84983 0.84077 0.89185 0.89179 0.77542 0.95253 0.95251 0.92393 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.06 -0.50 5.88 -104.63 -0.62 -1.12 16 3 C -0.14 -1.14 9.69 -39.57 -0.38 -1.52 16 4 C -0.11 -1.13 10.02 -39.54 -0.40 -1.52 16 5 C 0.06 0.87 7.31 -39.29 -0.29 0.58 16 6 F -0.13 -2.07 17.11 2.25 0.04 -2.03 16 7 C 0.11 1.50 6.69 -39.18 -0.26 1.24 16 8 O -0.28 -4.75 9.53 -39.52 -0.38 -5.13 16 9 C 0.04 0.56 5.22 36.00 0.19 0.75 16 10 C 0.50 10.11 7.91 -10.99 -0.09 10.02 16 11 O -0.53 -13.51 16.50 -14.35 -0.24 -13.74 16 12 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 13 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 14 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -25.87 13.29 55.43 0.74 -25.13 16 18 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.19 -1.99 8.69 -39.45 -0.34 -2.34 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 29 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 30 H 0.39 6.52 8.32 -40.82 -0.34 6.18 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.14 1.19 6.30 -52.48 -0.33 0.86 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -34.13 306.99 -6.80 -40.93 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.95 Total: 0.63 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.27 Total: -0.87 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.92 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.61 Total: -18.87 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.13 -6.80 -40.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085565775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.075 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds