Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.46971 * 2 1 4 4 N 1.46504 * 109.46966 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99982 * 264.82080 * 4 3 2 6 6 H 1.07997 * 120.00010 * 190.62715 * 5 4 3 7 7 C 1.39017 * 119.99805 * 10.62052 * 5 4 3 8 8 N 1.31388 * 119.99546 * 19.84336 * 7 5 4 9 9 Si 1.86794 * 119.99825 * 199.84171 * 7 5 4 10 10 H 1.48500 * 109.47230 * 84.98004 * 9 7 5 11 11 H 1.48506 * 109.46893 * 204.97990 * 9 7 5 12 12 H 1.48502 * 109.47450 * 324.97898 * 9 7 5 13 13 C 1.34773 * 120.00365 * 84.82216 * 4 3 2 14 14 O 1.21634 * 120.00120 * 180.02562 * 13 4 3 15 15 C 1.47289 * 119.99471 * 359.97438 * 13 4 3 16 16 C 1.40293 * 120.21696 * 269.99726 * 15 13 4 17 17 O 1.35662 * 120.14136 * 0.26154 * 16 15 13 18 18 C 1.38572 * 119.71804 * 179.97438 * 16 15 13 19 19 C 1.38196 * 120.16443 * 359.97438 * 18 16 15 20 20 C 1.38386 * 120.44188 * 0.02562 * 19 18 16 21 21 C 1.38153 * 120.27819 * 0.03803 * 20 19 18 22 22 F 1.35101 * 120.08439 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46867 * 60.00226 * 1 2 3 24 24 H 1.09005 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47785 * 300.00343 * 1 2 3 26 26 H 1.08999 * 109.47076 * 239.99892 * 2 1 3 27 27 H 1.09000 * 109.46867 * 119.99774 * 2 1 3 28 28 H 1.08999 * 109.47309 * 60.00035 * 3 2 1 29 29 H 1.09001 * 109.47588 * 299.99881 * 3 2 1 30 30 H 0.97004 * 119.99707 * 179.97438 * 8 7 5 31 31 H 0.96700 * 113.99606 * 269.72025 * 17 16 15 32 32 H 1.08000 * 119.91415 * 180.02562 * 18 16 15 33 33 H 1.08003 * 119.77510 * 180.02562 * 19 18 16 34 34 H 1.07997 * 119.85864 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1891 1.5497 1.1819 6 1 5.2552 1.7222 1.1748 7 6 3.5114 1.4366 2.3904 8 7 2.3340 0.8548 2.4312 9 14 4.2746 2.1117 3.9559 10 1 3.9589 3.5577 4.0769 11 1 3.7240 1.3851 5.1282 12 1 5.7475 1.9290 3.9074 13 6 4.1794 1.3369 -1.1614 14 8 5.3957 1.3365 -1.1608 15 6 3.4435 1.2211 -2.4320 16 6 3.0911 -0.0418 -2.9313 17 8 3.4222 -1.1630 -2.2430 18 6 2.3983 -0.1388 -4.1274 19 6 2.0552 1.0033 -4.8257 20 6 2.3993 2.2524 -4.3395 21 6 3.0912 2.3703 -3.1495 22 9 3.4256 3.5916 -2.6787 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.8612 0.7756 3.2745 31 1 4.2833 -1.5319 -2.4830 32 1 2.1251 -1.1093 -4.5145 33 1 1.5148 0.9205 -5.7572 34 1 2.1260 3.1388 -4.8927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228844183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = -83.672624 kcal Electronic energy + Delta-G solvation = -21310.730870 eV Core-core repulsion = 17931.105474 eV Total energy + Delta-G solvation = -3379.625396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.53969 -39.74469 -37.86260 -36.26642 -35.24431 -32.29324 -31.36549 -30.43368 -29.51436 -25.89232 -24.74735 -22.98295 -22.39438 -20.59864 -19.55625 -18.29648 -17.08024 -16.70595 -16.37331 -16.00931 -15.40688 -15.04415 -14.51249 -14.31881 -14.00576 -13.58171 -13.50050 -13.24510 -12.91110 -12.25262 -12.01108 -11.76757 -11.71778 -11.45938 -11.28265 -10.90447 -10.79581 -10.53232 -10.35106 -10.27147 -10.10343 -9.57964 -8.82900 -8.71838 -8.45339 -8.33110 -7.71363 -6.31722 -3.80872 1.25284 1.29702 3.15027 3.25702 3.30443 3.58612 3.74556 4.10465 4.21470 4.65548 4.80682 4.96713 5.03423 5.31373 5.34652 5.50741 5.82263 6.09387 6.12077 6.15000 6.23613 6.33542 6.37487 6.45678 6.51261 6.84717 6.90991 6.96253 7.03356 7.43818 7.53703 7.86249 7.90998 8.06964 8.50328 9.14575 9.40863 9.94897 10.64483 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.007766 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.254573 B = 3604.728276 C = 4011.670730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.130 3.870 4 N -0.417 5.417 5 C -0.305 4.305 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.861 5.861 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.479 3.521 14 O -0.590 6.590 15 C -0.142 4.142 16 C 0.166 3.834 17 O -0.480 6.480 18 C -0.163 4.163 19 C -0.078 4.078 20 C -0.171 4.171 21 C 0.133 3.867 22 F -0.129 7.129 23 H 0.033 0.967 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 -1.484 -10.507 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.006 3.994 4 N -0.132 5.132 5 C -0.433 4.433 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.752 3.248 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.266 3.734 14 O -0.477 6.477 15 C -0.146 4.146 16 C 0.120 3.880 17 O -0.291 6.291 18 C -0.181 4.181 19 C -0.097 4.097 20 C -0.190 4.190 21 C 0.113 3.887 22 F -0.108 7.108 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.250 0.750 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.186 -1.395 -10.000 11.351 hybrid contribution 0.575 0.415 0.640 0.955 sum -4.611 -0.980 -9.360 10.480 Atomic orbital electron populations 1.21586 0.97769 0.99800 1.00151 1.21992 0.93553 0.97757 1.03340 1.21516 0.80153 0.97556 1.00150 1.43688 1.05651 1.59011 1.04839 1.19765 0.94954 1.46778 0.81783 0.87757 1.25282 0.96431 0.96296 0.99305 1.70113 1.14633 1.38353 1.26904 0.85951 0.79521 0.78993 0.80308 1.20307 1.20976 1.19450 1.17276 0.87010 0.86144 0.82942 1.90626 1.12993 1.57521 1.86519 1.20772 1.01977 0.92630 0.99268 1.18166 0.95230 0.84972 0.89660 1.84799 1.41027 1.39323 1.63937 1.21358 1.02468 0.99657 0.94644 1.20796 0.98443 0.90976 0.99456 1.21005 1.02560 0.99360 0.96041 1.17640 0.97889 0.79665 0.93537 1.91527 1.90295 1.40643 1.88312 0.94834 0.94187 0.92991 0.93158 0.88127 0.87984 0.95836 0.92192 0.75013 0.84789 0.84823 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.14 16 2 C -0.13 -2.85 5.65 -26.74 -0.15 -3.00 16 3 C 0.13 3.10 4.35 -4.04 -0.02 3.08 16 4 N -0.42 -11.14 2.63 -116.08 -0.31 -11.45 16 5 C -0.31 -8.63 9.44 -14.99 -0.14 -8.77 16 6 H 0.10 3.11 7.28 -52.49 -0.38 2.73 16 7 C 0.03 0.79 5.01 -17.45 -0.09 0.70 16 8 N -0.86 -22.02 8.25 55.50 0.46 -21.56 16 9 Si 0.93 20.66 29.60 -169.99 -5.03 15.63 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 C 0.48 12.51 6.21 -12.58 -0.08 12.43 16 14 O -0.59 -17.32 16.71 5.25 0.09 -17.23 16 15 C -0.14 -2.99 3.90 -104.79 -0.41 -3.39 16 16 C 0.17 2.93 5.50 -38.69 -0.21 2.71 16 17 O -0.48 -8.39 11.23 -18.69 -0.21 -8.60 16 18 C -0.16 -2.22 9.97 -39.47 -0.39 -2.61 16 19 C -0.08 -0.96 10.03 -39.54 -0.40 -1.35 16 20 C -0.17 -2.43 10.00 -39.56 -0.40 -2.82 16 21 C 0.13 2.52 6.86 -38.96 -0.27 2.25 16 22 F -0.13 -2.67 16.83 2.25 0.04 -2.63 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 1.10 4.59 -51.93 -0.24 0.87 16 27 H 0.10 2.54 6.20 -51.93 -0.32 2.21 16 28 H 0.10 2.59 5.89 -51.93 -0.31 2.28 16 29 H 0.02 0.53 6.76 -51.93 -0.35 0.18 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.39 5.26 9.06 45.56 0.41 5.68 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 290.10 15.07 4.37 4.37 Total: -1.00 -32.12 290.10 -5.63 -37.75 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.86 Total: 6.62 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.18 Total: -2.91 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.15 Total: -33.01 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.12 Total: -25.84 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.12 -5.63 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228844183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.918 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds