Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47616 * 2 1 4 4 C 1.53003 * 109.47115 * 119.99803 * 2 1 3 5 5 N 1.46506 * 109.46741 * 304.99999 * 4 2 1 6 6 C 1.34781 * 119.99766 * 179.97438 * 5 4 2 7 7 O 1.21695 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.46366 * 120.00063 * 179.97438 * 6 5 4 9 9 H 1.08008 * 119.99934 * 0.02562 * 8 6 5 10 10 C 1.40047 * 120.00137 * 180.02562 * 8 6 5 11 11 N 1.30671 * 119.99998 * 0.02562 * 10 8 6 12 12 Si 1.86808 * 120.00094 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46944 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47014 * 120.00077 * 12 10 8 15 15 H 1.48499 * 109.46979 * 240.00113 * 12 10 8 16 16 C 1.50699 * 109.47345 * 239.99655 * 2 1 3 17 17 C 1.38247 * 119.97465 * 269.73105 * 16 2 1 18 18 C 1.38190 * 120.02973 * 180.27547 * 17 16 2 19 19 C 1.38466 * 119.97055 * 359.97438 * 18 17 16 20 20 F 1.35097 * 120.02197 * 179.97438 * 19 18 17 21 21 C 1.38454 * 119.94878 * 0.02562 * 19 18 17 22 22 C 1.38192 * 119.97677 * 0.02562 * 21 19 18 23 23 H 1.08992 * 109.47504 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47083 * 300.01090 * 1 2 3 25 25 H 1.09008 * 109.46814 * 59.99893 * 1 2 3 26 26 H 0.96696 * 113.99932 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47317 * 64.99524 * 4 2 1 28 28 H 1.08999 * 109.47677 * 185.00052 * 4 2 1 29 29 H 0.96994 * 120.00279 * 359.97438 * 5 4 2 30 30 H 0.97005 * 120.00112 * 179.97438 * 11 10 8 31 31 H 1.08003 * 119.98380 * 0.24954 * 17 16 2 32 32 H 1.08005 * 120.01789 * 180.02562 * 18 17 16 33 33 H 1.08001 * 120.01228 * 179.97438 * 21 19 18 34 34 H 1.07998 * 119.99239 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1035 2.4424 6 6 1.7639 -0.5772 3.6660 7 8 2.5277 -1.5178 3.7797 8 6 1.1807 0.0402 4.8580 9 1 0.5031 0.8752 4.7571 10 6 1.5012 -0.4517 6.1295 11 7 2.3213 -1.4616 6.2517 12 14 0.7574 0.3368 7.6509 13 1 -0.1320 1.4544 7.2446 14 1 -0.0307 -0.6759 8.3982 15 1 1.8434 0.8583 8.5193 16 6 2.0324 -0.7105 -1.2304 17 6 2.2679 -2.0722 -1.1939 18 6 2.7340 -2.7239 -2.3198 19 6 2.9646 -2.0124 -3.4851 20 9 3.4208 -2.6483 -4.5863 21 6 2.7284 -0.6486 -3.5205 22 6 2.2633 0.0010 -2.3930 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 2.9704 1.4235 -0.0004 27 1 1.7516 -1.7715 1.2057 28 1 3.1263 -0.6444 1.2953 29 1 0.8473 0.6464 2.3518 30 1 2.5437 -1.8021 7.1323 31 1 2.0880 -2.6269 -0.2848 32 1 2.9176 -3.7878 -2.2912 33 1 2.9083 -0.0926 -4.4287 34 1 2.0793 1.0649 -2.4202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274152173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = -112.846720 kcal Electronic energy + Delta-G solvation = -19778.175709 eV Core-core repulsion = 16397.285229 eV Total energy + Delta-G solvation = -3380.890480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.01626 -39.99795 -37.67626 -36.51676 -33.39031 -32.42191 -31.48994 -31.19882 -28.94728 -27.08747 -25.28863 -23.26184 -22.70584 -20.34233 -19.66833 -17.90621 -17.48306 -17.11258 -16.28944 -15.72165 -15.46582 -14.97003 -14.89031 -14.52126 -14.10950 -13.75455 -13.54773 -13.24999 -13.16705 -12.72345 -12.33967 -12.27302 -12.18285 -11.78459 -11.42790 -11.16753 -11.14677 -10.87433 -10.70351 -10.47693 -10.21440 -9.90196 -9.23274 -8.86635 -8.70165 -7.63663 -7.51880 -6.19653 -4.64510 0.97571 1.11065 3.12802 3.21178 3.25743 3.43585 4.06705 4.12541 4.23408 4.44758 4.58132 4.64751 4.75705 5.01082 5.10609 5.17488 5.27055 5.31139 5.73695 5.74862 5.78741 5.91337 5.94484 5.98394 6.14411 6.24040 6.28916 6.35243 6.44690 6.75396 7.43192 7.69411 7.93403 8.07568 8.32640 9.02260 9.52523 10.58929 10.77372 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041106 B = 0.003903 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.010026 B = 7172.706008 C = 7608.504648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.163 3.837 3 O -0.549 6.549 4 C 0.111 3.889 5 N -0.760 5.760 6 C 0.554 3.446 7 O -0.583 6.583 8 C -0.544 4.544 9 H 0.068 0.932 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.119 4.119 17 C -0.079 4.079 18 C -0.153 4.153 19 C 0.093 3.907 20 F -0.143 7.143 21 C -0.157 4.157 22 C -0.075 4.075 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.378 0.622 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.384 0.616 30 H 0.267 0.733 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 2.299 -16.449 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.122 3.878 3 O -0.355 6.355 4 C -0.014 4.014 5 N -0.417 5.417 6 C 0.358 3.642 7 O -0.466 6.466 8 C -0.581 4.581 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.732 3.268 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.120 4.120 17 C -0.097 4.097 18 C -0.172 4.172 19 C 0.074 3.926 20 F -0.122 7.122 21 C -0.176 4.176 22 C -0.093 4.093 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.226 0.774 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.217 0.783 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.507 1.569 -16.283 16.428 hybrid contribution 0.150 0.373 0.418 0.580 sum -1.357 1.942 -15.865 16.041 Atomic orbital electron populations 1.21715 0.91379 1.02813 1.03003 1.20254 0.95286 0.81854 0.90377 1.86518 1.26999 1.25229 1.96778 1.21568 0.97802 0.96822 0.85238 1.46093 1.52593 1.38141 1.04915 1.18244 0.81341 0.83177 0.81467 1.90598 1.39386 1.30795 1.85850 1.20917 1.29700 1.17806 0.89701 0.91367 1.25708 0.93602 0.93882 1.00019 1.70033 1.26219 1.19563 1.23925 0.86324 0.79397 0.79721 0.81363 1.18747 1.20184 1.20177 1.20621 1.00552 0.94425 0.96369 1.21194 0.96219 0.94097 0.98208 1.21176 1.02878 1.01015 0.92107 1.17783 1.00237 0.91084 0.83508 1.91486 1.86618 1.82274 1.51833 1.21117 1.03468 0.92749 1.00291 1.20880 0.96681 1.00696 0.91018 0.90948 0.90715 0.92095 0.77422 0.92293 0.93010 0.78298 0.92192 0.84031 0.84630 0.84861 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.60 37.16 0.32 -1.40 16 2 C 0.16 2.24 0.90 -91.77 -0.08 2.16 16 3 O -0.55 -7.33 11.91 -35.23 -0.42 -7.75 16 4 C 0.11 2.01 4.28 -4.04 -0.02 2.00 16 5 N -0.76 -16.55 5.18 -61.72 -0.32 -16.87 16 6 C 0.55 15.56 7.75 -12.99 -0.10 15.46 16 7 O -0.58 -18.66 15.02 5.19 0.08 -18.58 16 8 C -0.54 -15.29 9.54 -35.64 -0.34 -15.63 16 9 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 10 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.95 11.83 55.55 0.66 -22.29 16 12 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 16 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 C -0.12 -1.45 4.81 -104.62 -0.50 -1.96 16 17 C -0.08 -0.98 9.13 -39.60 -0.36 -1.34 16 18 C -0.15 -1.76 10.03 -39.52 -0.40 -2.15 16 19 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 20 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.16 -1.65 10.03 -39.52 -0.40 -2.04 16 22 C -0.07 -0.80 9.34 -39.60 -0.37 -1.17 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.04 6.58 -51.93 -0.34 0.69 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.38 4.16 9.04 45.56 0.41 4.57 16 27 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.38 7.60 6.97 -40.82 -0.28 7.31 16 30 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 31 H 0.14 1.78 6.05 -52.48 -0.32 1.46 16 32 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.32 7.49 -52.49 -0.39 0.93 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -34.05 298.30 -6.03 -40.08 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.91 Total: 10.55 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.63 Total: -2.95 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.34 Total: -39.17 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.34 Total: -26.33 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.05 -6.03 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274152173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.767 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds