Wall clock time and date at job start Mon Mar 30 2020 00:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47825 * 299.99776 * 11 10 9 13 13 C 1.53003 * 109.47312 * 60.00066 * 11 10 9 14 14 C 1.50703 * 109.47279 * 179.97438 * 11 10 9 15 15 H 1.08008 * 119.99511 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00560 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00210 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47191 * 89.99538 * 18 16 14 20 20 H 1.48500 * 109.47235 * 209.99791 * 18 16 14 21 21 H 1.48500 * 109.46894 * 329.99342 * 18 16 14 22 22 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 23 23 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 24 24 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 25 25 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 26 26 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 27 27 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 28 28 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 29 29 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 30 30 H 1.09007 * 109.46719 * 59.99915 * 12 11 10 31 31 H 1.08998 * 109.47847 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47108 * 300.00574 * 12 11 10 33 33 H 1.09001 * 109.46934 * 59.99651 * 13 11 10 34 34 H 1.08998 * 109.47616 * 179.97438 * 13 11 10 35 35 H 1.08997 * 109.46881 * 299.99977 * 13 11 10 36 36 H 0.96999 * 119.99535 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 3.9556 -5.8360 -1.2228 13 6 3.9482 -5.8290 1.2756 14 6 2.4976 -7.4052 0.0270 15 1 1.4254 -7.5353 0.0241 16 6 3.3258 -8.5076 0.0331 17 7 4.6314 -8.3491 0.0361 18 14 2.5934 -10.2260 0.0357 19 1 2.4040 -10.6855 -1.3637 20 1 3.5124 -11.1547 0.7416 21 1 1.2816 -10.2039 0.7313 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.8374 2.1103 -0.0038 26 1 4.4043 -1.7239 0.0163 27 1 3.4986 -3.5196 0.0183 28 1 1.3432 -5.1144 0.9065 29 1 1.3492 -5.1196 -0.8735 30 1 4.3829 -4.8332 -1.2243 31 1 4.7583 -6.5734 -1.2187 32 1 3.3431 -5.9712 -2.1143 33 1 3.3304 -5.9594 2.1641 34 1 4.7509 -6.5664 1.2803 35 1 4.3755 -4.8263 1.2741 36 1 5.2140 -9.1246 0.0400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315773093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:49 Heat of formation + Delta-G solvation = -35.641200 kcal Electronic energy + Delta-G solvation = -18155.385468 eV Core-core repulsion = 15344.056047 eV Total energy + Delta-G solvation = -2811.329422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 5.54 seconds Orbital eigenvalues (eV) -41.03172 -38.60465 -37.68872 -35.11557 -33.05115 -31.69372 -28.72776 -27.59140 -27.46729 -26.84541 -24.93472 -21.96128 -20.69828 -19.89221 -18.62270 -18.15200 -17.63748 -16.64125 -16.33813 -16.28974 -15.33330 -14.93037 -14.77715 -14.38283 -14.22236 -14.10715 -13.96735 -13.52621 -13.22229 -13.11048 -12.99291 -12.77687 -12.69214 -12.59985 -12.27195 -12.14075 -11.81760 -11.50965 -11.27956 -10.81704 -10.68578 -10.40833 -10.04529 -9.81118 -9.20112 -8.03150 -6.18836 -0.19984 0.65944 0.98268 1.01107 1.42493 1.45346 1.53624 2.30513 2.36586 2.49896 3.20605 3.75786 4.00802 4.24441 4.37349 4.44964 4.48969 4.66608 4.69881 4.76157 4.84129 4.96717 5.01702 5.02283 5.10052 5.16756 5.30003 5.34265 5.54421 5.63232 5.64611 5.66330 6.12533 6.19008 6.41947 6.63913 6.84720 7.27619 7.48873 8.95958 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.036994 B = 0.004303 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.696338 B = 6506.051372 C = 7066.384517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.079 4.079 3 C -0.241 4.241 4 S 0.250 5.750 5 C -0.214 4.214 6 C -0.180 4.180 7 C 0.562 3.438 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.149 3.851 11 C 0.051 3.949 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.276 1.276 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.196 0.804 26 H 0.182 0.818 27 H 0.406 0.594 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 19.145 -0.016 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 C -0.376 4.376 4 S 0.517 5.483 5 C -0.353 4.353 6 C -0.199 4.199 7 C 0.350 3.650 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.025 3.975 11 C 0.050 3.950 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.567 4.567 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.538 5.538 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.201 1.201 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.213 0.787 26 H 0.199 0.801 27 H 0.243 0.757 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.221 19.786 -0.009 19.911 hybrid contribution -1.332 -2.396 -0.035 2.742 sum 0.889 17.390 -0.044 17.413 Atomic orbital electron populations 1.20572 0.89057 1.03288 1.02608 1.19971 0.97829 0.90264 1.00934 1.25655 0.97120 1.03028 1.11767 1.82689 1.04123 0.93978 1.67496 1.25981 0.99100 1.05203 1.05015 1.20185 0.93398 0.93399 1.12891 1.18163 0.86143 0.84794 0.75938 1.90682 1.15709 1.87255 1.52600 1.46007 1.10419 1.05731 1.73506 1.21302 0.96699 0.80404 0.99059 1.18366 0.91369 0.91748 0.93507 1.21675 1.00391 0.98981 0.96785 1.21673 1.00395 0.98968 0.96795 1.21255 0.92600 0.91524 1.51356 0.93738 1.25445 0.95252 1.01764 0.94618 1.69904 1.02809 1.30410 1.50631 0.85750 0.78298 0.80709 0.77997 1.20483 1.20763 1.20105 0.91397 0.91979 0.89512 0.78656 0.80056 0.75703 0.94210 0.94210 0.94633 0.91705 0.96298 0.96282 0.91704 0.94635 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 9.55 71.24 0.68 -1.73 16 2 C -0.08 -2.00 6.01 -19.47 -0.12 -2.12 16 3 C -0.24 -4.30 10.91 66.64 0.73 -3.58 16 4 S 0.25 3.89 23.02 -56.49 -1.30 2.59 16 5 C -0.21 -4.74 10.38 67.30 0.70 -4.04 16 6 C -0.18 -5.23 5.98 -19.87 -0.12 -5.35 16 7 C 0.56 20.83 7.79 86.59 0.67 21.50 16 8 O -0.58 -25.26 14.20 -4.15 -0.06 -25.32 16 9 N -0.71 -25.80 4.93 -466.60 -2.30 -28.10 16 10 C 0.15 6.53 4.50 86.38 0.39 6.92 16 11 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 12 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 13 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 14 C -0.53 -28.17 8.01 25.60 0.21 -27.96 16 15 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.53 5.15 84.65 0.44 1.97 16 17 N -0.90 -47.85 9.35 21.45 0.20 -47.65 16 18 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.96 6.01 -2.39 -0.01 1.95 16 24 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 26 H 0.18 3.43 7.01 -2.91 -0.02 3.41 16 27 H 0.41 12.88 4.66 -92.71 -0.43 12.45 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.03 1.33 6.86 -2.38 -0.02 1.31 16 31 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 32 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 35 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 36 H 0.26 13.35 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -62.11 303.81 3.94 -58.17 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.66 Total: 17.27 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.71 Total: -21.68 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.10 Total: -75.76 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.30 Total: 2.59 kcal Total: -62.11 3.94 -58.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315773093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.533 kcal (2) G-P(sol) polarization free energy of solvation -62.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds