Wall clock time and date at job start Mon Mar 30 2020 00:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33386 * 125.20356 * 2 1 4 4 C 1.38423 * 114.91945 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53697 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47527 * 270.00499 * 5 4 3 7 7 C 1.47840 * 111.00025 * 290.84676 * 6 5 4 8 8 C 1.54907 * 104.79452 * 213.63515 * 7 6 5 9 9 C 1.55139 * 101.65332 * 37.06884 * 8 7 6 10 10 O 1.42897 * 110.70748 * 82.73506 * 9 8 7 11 11 C 1.50708 * 110.85655 * 205.89489 * 9 8 7 12 12 H 1.07998 * 119.99623 * 20.84037 * 11 9 8 13 13 C 1.37877 * 119.99857 * 200.84344 * 11 9 8 14 14 N 1.31517 * 119.99374 * 173.62426 * 13 11 9 15 15 Si 1.86794 * 120.00073 * 353.62301 * 13 11 9 16 16 H 1.48495 * 109.47340 * 86.34294 * 15 13 11 17 17 H 1.48498 * 109.46879 * 206.33990 * 15 13 11 18 18 H 1.48500 * 109.47373 * 326.33701 * 15 13 11 19 19 C 1.47442 * 111.00211 * 169.99796 * 6 5 4 20 20 C 1.33384 * 114.92281 * 0.02562 * 4 3 2 21 21 S 1.75880 * 109.59354 * 359.97438 * 20 4 3 22 22 H 1.09004 * 109.47518 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47468 * 299.99660 * 1 2 3 24 24 H 1.09002 * 109.47352 * 59.99696 * 1 2 3 25 25 H 1.08003 * 122.54129 * 359.96277 * 3 2 1 26 26 H 1.08999 * 109.47223 * 30.01220 * 5 4 3 27 27 H 1.09007 * 109.46935 * 150.00582 * 5 4 3 28 28 H 1.09005 * 110.37503 * 332.45859 * 7 6 5 29 29 H 1.09004 * 110.37786 * 94.80723 * 7 6 5 30 30 H 1.09002 * 110.99263 * 278.97799 * 8 7 6 31 31 H 1.09000 * 111.02725 * 155.17790 * 8 7 6 32 32 H 0.96700 * 114.00750 * 61.05664 * 10 9 8 33 33 H 0.97005 * 119.99629 * 179.97438 * 14 13 11 34 34 H 1.08996 * 109.89447 * 242.66909 * 19 6 5 35 35 H 1.09003 * 109.88867 * 3.85893 * 19 6 5 36 36 H 1.08009 * 125.20317 * 180.26293 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0006 5 6 4.6623 1.9481 0.0012 6 7 4.9957 2.3077 -1.3835 7 6 5.7473 1.2211 -2.0467 8 6 6.7215 1.9445 -3.0097 9 6 7.1137 3.1941 -2.1782 10 8 8.1585 2.8796 -1.2555 11 6 7.5251 4.3303 -3.0788 12 1 7.2117 4.3409 -4.1123 13 6 8.3017 5.3562 -2.5833 14 7 8.7653 6.2811 -3.3954 15 14 8.6953 5.4324 -0.7589 16 1 9.9011 4.6127 -0.4779 17 1 8.9522 6.8414 -0.3665 18 1 7.5454 4.9040 0.0181 19 6 5.8088 3.5368 -1.4291 20 6 3.9750 -0.4478 0.0005 21 16 2.5209 -1.4372 0.0004 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8669 2.0895 -0.0006 26 1 4.2563 2.8194 0.5152 27 1 5.5619 1.6095 0.5153 28 1 6.3031 0.6399 -1.3108 29 1 5.0690 0.5770 -2.6064 30 1 6.2171 2.2319 -3.9322 31 1 7.5941 1.3262 -3.2206 32 1 8.9761 2.5782 -1.6747 33 1 9.3114 7.0031 -3.0467 34 1 5.2691 4.3189 -1.9631 35 1 6.0386 3.8672 -0.4161 36 1 4.9863 -0.8272 0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592525245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:36 Heat of formation + Delta-G solvation = -33.102263 kcal Electronic energy + Delta-G solvation = -18388.378322 eV Core-core repulsion = 15577.158997 eV Total energy + Delta-G solvation = -2811.219325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -40.63327 -39.03192 -36.61240 -34.45639 -33.41683 -31.55870 -30.06004 -27.84518 -27.33358 -25.79224 -22.72830 -21.80841 -21.43584 -19.86580 -19.31582 -17.91556 -17.13785 -17.05490 -16.54883 -16.01928 -15.50819 -15.29829 -14.72487 -14.65257 -14.21803 -14.12834 -13.85758 -13.65498 -13.60245 -13.18338 -12.99189 -12.83868 -12.54708 -12.39254 -12.26664 -12.17330 -11.97263 -11.86538 -11.57321 -11.19767 -10.63380 -10.35776 -9.46611 -9.33112 -9.13851 -8.35481 -6.47172 0.10085 0.76472 1.06571 1.44839 1.47413 1.66606 1.75535 2.41148 2.98241 3.22771 3.50567 3.80227 4.00132 4.12530 4.24409 4.32915 4.35717 4.46316 4.52556 4.63681 4.65704 4.72755 4.78342 4.78992 4.99615 5.08988 5.13329 5.24469 5.25985 5.38892 5.51037 5.58143 5.63820 6.00304 6.08021 6.18880 6.60340 6.98371 7.31043 8.78287 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.039115 B = 0.004634 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.659355 B = 6041.077466 C = 6134.493259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.181 4.181 3 C -0.142 4.142 4 C -0.090 4.090 5 C 0.109 3.891 6 N -0.528 5.528 7 C 0.060 3.940 8 C -0.138 4.138 9 C 0.204 3.796 10 O -0.569 6.569 11 C -0.547 4.547 12 H 0.040 0.960 13 C 0.026 3.974 14 N -0.939 5.939 15 Si 0.999 3.001 16 H -0.279 1.279 17 H -0.332 1.332 18 H -0.262 1.262 19 C 0.059 3.941 20 C -0.221 4.221 21 S 0.104 5.896 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.141 0.859 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.381 0.619 33 H 0.266 0.734 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.230 -15.740 9.100 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.172 4.172 4 C -0.103 4.103 5 C -0.021 4.021 6 N -0.252 5.252 7 C -0.068 4.068 8 C -0.177 4.177 9 C 0.163 3.837 10 O -0.378 6.378 11 C -0.585 4.585 12 H 0.059 0.941 13 C -0.173 4.173 14 N -0.577 5.577 15 Si 0.832 3.168 16 H -0.206 1.206 17 H -0.264 1.264 18 H -0.187 1.187 19 C -0.069 4.069 20 C -0.357 4.357 21 S 0.368 5.632 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.159 0.841 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.230 0.770 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.358 -16.926 9.237 24.041 hybrid contribution 2.111 1.945 0.279 2.884 sum -12.248 -14.981 9.516 21.563 Atomic orbital electron populations 1.20415 0.85917 1.03693 1.03847 1.24801 1.01209 0.95179 1.08624 1.20019 0.92196 1.00065 1.04913 1.18764 0.94706 0.93865 1.02960 1.20921 0.95613 0.96122 0.89486 1.63675 1.42443 1.03486 1.15589 1.22919 0.94404 0.93222 0.96225 1.23169 0.99268 0.96891 0.98356 1.20265 0.85088 0.92041 0.86294 1.86079 1.26095 1.86861 1.38814 1.21543 1.33097 1.06645 0.97194 0.94145 1.25842 0.94348 0.94351 1.02806 1.70094 1.35275 1.14742 1.37585 0.84921 0.79454 0.72756 0.79644 1.20603 1.26405 1.18712 1.23054 0.92002 0.92465 0.99371 1.25553 1.02582 0.96205 1.11327 1.83949 0.96210 1.09405 1.73625 0.90454 0.89464 0.89940 0.84147 0.90269 0.94205 0.93151 0.90340 0.91902 0.90163 0.76996 0.92480 0.91040 0.93391 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.38 71.24 0.74 -0.39 16 2 C -0.18 -3.75 6.51 24.59 0.16 -3.59 16 3 C -0.14 -3.48 9.85 21.22 0.21 -3.28 16 4 C -0.09 -2.42 5.00 -20.92 -0.10 -2.52 16 5 C 0.11 3.34 4.83 85.56 0.41 3.75 16 6 N -0.53 -18.80 5.15 -890.10 -4.59 -23.39 16 7 C 0.06 1.96 5.67 86.77 0.49 2.45 16 8 C -0.14 -5.24 6.23 31.98 0.20 -5.04 16 9 C 0.20 9.05 0.68 -10.36 -0.01 9.05 16 10 O -0.57 -23.93 8.88 -148.98 -1.32 -25.25 16 11 C -0.55 -30.16 8.71 25.60 0.22 -29.94 16 12 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 13 C 0.03 1.48 5.46 84.65 0.46 1.95 16 14 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 15 Si 1.00 48.51 24.90 68.60 1.71 50.22 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.33 -16.54 7.11 99.48 0.71 -15.83 16 18 H -0.26 -12.27 5.18 99.48 0.52 -11.76 16 19 C 0.06 2.50 5.64 86.65 0.49 2.99 16 20 C -0.22 -5.28 10.31 66.72 0.69 -4.59 16 21 S 0.10 2.10 23.33 -56.49 -1.32 0.79 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 27 H 0.04 1.25 7.83 -2.38 -0.02 1.23 16 28 H 0.05 1.55 7.48 -2.38 -0.02 1.53 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.53 7.99 -2.39 -0.02 2.51 16 31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.38 14.07 9.07 -74.06 -0.67 13.39 16 33 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 34 H 0.07 3.27 7.82 -2.39 -0.02 3.26 16 35 H 0.05 2.07 5.70 -2.39 -0.01 2.06 16 36 H 0.17 3.63 7.95 -2.91 -0.02 3.60 16 Total: -1.00 -64.69 301.77 -1.04 -65.73 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.21 Total: 18.61 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.96 Total: -29.15 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -4.29 Total: -80.94 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.32 Total: -25.25 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.71 Total: 50.22 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.79 kcal Total: -64.69 -1.04 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592525245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.632 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds