Wall clock time and date at job start Mon Mar 30 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33810 * 124.52425 * 2 1 4 4 C 1.37473 * 115.10237 * 180.24025 * 3 2 1 5 5 C 1.50696 * 123.35337 * 179.76645 * 4 3 2 6 6 C 1.36648 * 113.29354 * 359.49885 * 4 3 2 7 7 C 1.46586 * 125.45622 * 180.23435 * 6 4 3 8 8 O 1.21704 * 120.00208 * 350.30212 * 7 6 4 9 9 N 1.34778 * 119.99952 * 170.29831 * 7 6 4 10 10 C 1.46498 * 120.00017 * 0.39429 * 9 7 6 11 11 C 1.46502 * 119.99886 * 180.39571 * 9 7 6 12 12 H 1.09001 * 109.47155 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.46928 * 119.99969 * 11 9 7 14 14 C 1.50693 * 109.46890 * 239.99898 * 11 9 7 15 15 H 1.08002 * 120.00370 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99997 * 180.02562 * 14 11 9 17 17 N 1.31514 * 119.99758 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00177 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47184 * 89.99806 * 18 16 14 20 20 H 1.48499 * 109.47451 * 210.00015 * 18 16 14 21 21 H 1.48505 * 109.47079 * 329.99803 * 18 16 14 22 22 S 1.70620 * 124.52018 * 179.71732 * 2 1 3 23 23 H 1.09000 * 109.47347 * 180.30805 * 1 2 3 24 24 H 1.08998 * 109.47057 * 300.30357 * 1 2 3 25 25 H 1.08992 * 109.47058 * 60.30908 * 1 2 3 26 26 H 1.08000 * 122.45003 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47104 * 269.70486 * 5 4 3 28 28 H 1.09003 * 109.47251 * 149.70247 * 5 4 3 29 29 H 1.09005 * 109.47429 * 29.70392 * 5 4 3 30 30 H 1.08997 * 109.47413 * 83.49500 * 10 9 7 31 31 H 1.08997 * 109.47314 * 203.49817 * 10 9 7 32 32 H 1.09004 * 109.47340 * 323.49440 * 10 9 7 33 33 H 1.09003 * 109.46976 * 179.97438 * 13 11 9 34 34 H 1.08997 * 109.47270 * 299.99896 * 13 11 9 35 35 H 1.09001 * 109.47294 * 59.99973 * 13 11 9 36 36 H 0.97004 * 119.99857 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8774 -0.0052 5 6 4.6449 1.9835 -0.0113 6 6 3.9492 -0.4492 0.0015 7 6 5.3123 -0.9884 0.0031 8 8 6.2602 -0.2472 -0.1793 9 7 5.5159 -2.3051 0.2065 10 6 4.3744 -3.1988 0.4175 11 6 6.8787 -2.8426 0.2167 12 1 7.5893 -2.0344 0.0438 13 6 7.1616 -3.4895 1.5741 14 6 7.0193 -3.8758 -0.8712 15 1 6.1776 -4.1091 -1.5065 16 6 8.2223 -4.5240 -1.0550 17 7 9.2468 -4.2410 -0.2805 18 14 8.3968 -5.8042 -2.4040 19 1 8.8443 -5.1450 -3.6572 20 1 9.3985 -6.8213 -1.9948 21 1 7.0863 -6.4643 -2.6326 22 16 2.4739 -1.4058 0.0069 23 1 -0.3634 -1.0276 0.0055 24 1 -0.3633 0.5185 0.8872 25 1 -0.3633 0.5090 -0.8927 26 1 1.8429 2.0964 0.0004 27 1 4.8913 2.2449 -1.0403 28 1 5.5452 1.6485 0.5040 29 1 4.2386 2.8573 0.4982 30 1 3.9613 -3.4945 -0.5469 31 1 4.7026 -4.0857 0.9595 32 1 3.6099 -2.6812 0.9969 33 1 8.1754 -3.8898 1.5816 34 1 7.0599 -2.7422 2.3610 35 1 6.4510 -4.2978 1.7466 36 1 10.0932 -4.6968 -0.4100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601036906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:36 Heat of formation + Delta-G solvation = -25.758164 kcal Electronic energy + Delta-G solvation = -18384.755063 eV Core-core repulsion = 15573.854202 eV Total energy + Delta-G solvation = -2810.900861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91412 -39.06334 -37.10786 -34.91586 -33.54740 -31.64892 -29.30917 -28.18230 -27.77664 -27.28236 -23.65256 -22.82539 -21.17171 -19.05342 -18.97023 -18.38557 -17.11781 -16.78638 -16.45433 -16.16940 -15.30909 -15.00138 -14.59226 -14.52131 -14.31589 -13.95723 -13.88988 -13.72757 -13.55293 -13.49077 -12.97147 -12.80627 -12.74136 -12.63982 -12.47583 -12.34467 -12.20664 -12.10156 -11.33053 -11.21386 -10.75319 -10.51273 -9.67592 -9.43771 -9.10044 -8.15675 -6.32716 -0.38922 0.58300 1.04938 1.41334 1.42871 1.46303 1.53128 2.23944 2.26996 2.46800 3.12211 3.70834 3.87261 4.16131 4.28678 4.32261 4.50155 4.57702 4.66895 4.69301 4.76779 4.80527 4.85026 4.90333 5.00928 5.03250 5.14884 5.20874 5.38981 5.46935 5.57623 5.59966 5.65438 6.00109 6.12997 6.70081 6.74194 7.24608 7.41877 8.88850 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.005466 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.889707 B = 5121.517199 C = 5537.378130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.213 4.213 3 C -0.168 4.168 4 C -0.027 4.027 5 C -0.097 4.097 6 C -0.316 4.316 7 C 0.565 3.435 8 O -0.587 6.587 9 N -0.597 5.597 10 C 0.071 3.929 11 C 0.264 3.736 12 H 0.012 0.988 13 C -0.133 4.133 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.278 1.278 21 H -0.261 1.261 22 S 0.253 5.747 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.163 0.837 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.019 0.981 35 H 0.051 0.949 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 5.481 2.166 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.332 4.332 3 C -0.197 4.197 4 C -0.043 4.043 5 C -0.156 4.156 6 C -0.435 4.435 7 C 0.355 3.645 8 O -0.471 6.471 9 N -0.326 5.326 10 C -0.073 4.073 11 C 0.162 3.838 12 H 0.030 0.970 13 C -0.192 4.192 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.209 1.209 20 H -0.204 1.204 21 H -0.185 1.185 22 S 0.523 5.477 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.180 0.820 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.129 4.203 2.124 19.700 hybrid contribution 1.216 0.993 -0.668 1.707 sum -17.912 5.196 1.455 18.708 Atomic orbital electron populations 1.20496 0.84985 1.04140 1.04403 1.25309 1.03601 0.99647 1.04674 1.19869 0.90682 1.01033 1.08126 1.19726 0.96139 0.92930 0.95516 1.20601 0.96789 0.95540 1.02645 1.24380 0.96890 0.98936 1.23334 1.17605 0.87694 0.82295 0.76915 1.90691 1.44370 1.58773 1.53313 1.48090 1.09394 1.06528 1.68605 1.21978 0.87486 0.95486 1.02341 1.18609 0.77830 0.92753 0.94597 0.97040 1.21900 1.03189 0.98774 0.95315 1.21542 0.97899 1.21926 1.16482 0.92210 1.25732 0.95119 0.99002 0.98446 1.70020 1.02570 1.43323 1.39602 0.85436 0.78430 0.78413 0.78622 1.20929 1.20350 1.18480 1.83255 0.91193 1.05567 1.67703 0.90302 0.88928 0.89104 0.81991 0.91119 0.92663 0.88928 0.91497 0.88658 0.89816 0.90996 0.96189 0.93053 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.33 71.24 0.74 -0.28 16 2 C -0.21 -4.49 6.28 24.68 0.15 -4.33 16 3 C -0.17 -3.97 9.82 21.08 0.21 -3.76 16 4 C -0.03 -0.86 5.90 -20.42 -0.12 -0.98 16 5 C -0.10 -3.00 9.44 71.23 0.67 -2.33 16 6 C -0.32 -11.40 6.22 24.08 0.15 -11.25 16 7 C 0.57 26.27 7.60 86.42 0.66 26.93 16 8 O -0.59 -31.90 13.74 -4.36 -0.06 -31.96 16 9 N -0.60 -27.27 2.75 -831.63 -2.29 -29.55 16 10 C 0.07 2.46 8.12 127.77 1.04 3.49 16 11 C 0.26 14.22 2.63 44.24 0.12 14.34 16 12 H 0.01 0.75 6.90 -2.39 -0.02 0.73 16 13 C -0.13 -6.57 8.96 71.98 0.64 -5.92 16 14 C -0.54 -29.97 8.37 25.60 0.21 -29.76 16 15 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 16 C 0.02 0.93 5.30 84.66 0.45 1.38 16 17 N -0.92 -53.26 11.32 21.45 0.24 -53.01 16 18 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 S 0.25 6.42 17.85 -56.49 -1.01 5.42 16 23 H 0.08 0.82 8.11 -2.39 -0.02 0.80 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 2.09 6.28 -2.39 -0.01 2.08 16 29 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.07 2.15 7.76 -2.39 -0.02 2.13 16 31 H 0.09 3.19 6.45 -2.39 -0.02 3.17 16 32 H 0.08 2.41 4.64 -20.43 -0.09 2.32 16 33 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 2.26 6.67 -2.39 -0.02 2.24 16 36 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -70.74 303.08 4.83 -65.91 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.00 Total: 10.28 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.92 Total: -12.48 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.05 Total: -82.57 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.06 Total: -31.96 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.01 Total: 5.42 kcal Total: -70.74 4.83 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.151 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds