Wall clock time and date at job start Mon Mar 30 2020 00:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38833 * 119.97126 * 2 1 4 4 N 1.38834 * 120.16727 * 359.95798 * 3 2 1 5 5 C 1.40484 * 119.66509 * 179.97438 * 3 2 1 6 6 C 1.47172 * 120.18738 * 179.97438 * 5 3 2 7 7 O 1.21532 * 120.00063 * 354.15068 * 6 5 3 8 8 O 1.34788 * 119.99787 * 174.14772 * 6 5 3 9 9 C 1.45197 * 116.99728 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47249 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47479 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00190 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00342 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00197 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00004 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47120 * 89.99403 * 15 13 11 17 17 H 1.48496 * 109.47203 * 209.99591 * 15 13 11 18 18 H 1.48497 * 109.47091 * 329.99723 * 15 13 11 19 19 C 1.39872 * 119.62787 * 0.02562 * 5 3 2 20 20 C 1.37608 * 119.94341 * 0.02562 * 19 5 3 21 21 C 1.38245 * 119.98039 * 180.23624 * 2 1 3 22 22 F 1.35094 * 119.81193 * 0.04011 * 21 2 1 23 23 H 1.08998 * 109.47583 * 90.00265 * 1 2 3 24 24 H 1.09003 * 109.46695 * 209.99706 * 1 2 3 25 25 H 1.09004 * 109.47348 * 329.99443 * 1 2 3 26 26 H 0.97000 * 119.99551 * 185.53256 * 4 3 2 27 27 H 0.96994 * 120.00192 * 5.52971 * 4 3 2 28 28 H 1.09007 * 109.46967 * 299.99686 * 9 8 6 29 29 H 1.08999 * 109.47452 * 59.99843 * 9 8 6 30 30 H 1.08999 * 109.46983 * 299.99999 * 10 9 8 31 31 H 1.09007 * 109.47262 * 60.00199 * 10 9 8 32 32 H 0.96998 * 120.00333 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.03109 * 179.97438 * 19 5 3 34 34 H 1.07999 * 119.83460 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.2027 0.0000 4 7 1.5093 2.4067 -0.0009 5 6 3.6053 1.1952 0.0005 6 6 4.3521 2.4633 0.0000 7 8 3.7584 3.5182 -0.1082 8 8 5.6947 2.4548 0.1195 9 6 6.3653 3.7427 0.1118 10 6 7.8739 3.5330 0.2559 11 6 8.5700 4.8695 0.2472 12 1 7.9939 5.7779 0.1491 13 6 9.9422 4.9330 0.3655 14 7 10.5496 6.0995 0.3584 15 14 10.9386 3.3622 0.5359 16 1 11.3260 2.8731 -0.8117 17 1 12.1610 3.6354 1.3336 18 1 10.1210 2.3292 1.2211 19 6 4.2903 -0.0243 0.0005 20 6 3.5870 -1.2071 -0.0005 21 6 2.1978 -1.1975 -0.0049 22 9 1.5181 -2.3649 -0.0106 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9930 3.2435 -0.0819 27 1 0.5427 2.4110 0.0794 28 1 6.1581 4.2545 -0.8281 29 1 6.0011 4.3470 0.9425 30 1 8.0814 3.0210 1.1955 31 1 8.2379 2.9288 -0.5752 32 1 11.5150 6.1441 0.4413 33 1 5.3702 -0.0377 0.0005 34 1 4.1177 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781800678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:38 Heat of formation + Delta-G solvation = -115.031564 kcal Electronic energy + Delta-G solvation = -19448.868835 eV Core-core repulsion = 16067.883613 eV Total energy + Delta-G solvation = -3380.985222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.19764 -40.60060 -38.95057 -36.36869 -34.78969 -33.33236 -32.60376 -30.83473 -29.44137 -27.14590 -25.50160 -23.69322 -21.99109 -20.95972 -20.63508 -18.02381 -17.98111 -17.34637 -16.85338 -16.27174 -16.16718 -15.86757 -15.35360 -15.26413 -14.24134 -13.98580 -13.96279 -13.53246 -13.47732 -13.25635 -12.92199 -12.50564 -12.42372 -12.28347 -11.56387 -11.43769 -11.29105 -10.83953 -10.73684 -10.61051 -10.02429 -9.95310 -9.75277 -9.37639 -8.92281 -8.64398 -7.87757 -6.15021 -4.16525 0.54437 1.24541 2.52881 3.02766 3.26696 3.34283 3.38199 3.56079 3.57093 4.08859 4.36805 4.43267 4.60976 4.82175 4.97523 5.18592 5.20869 5.29599 5.30585 5.56365 5.77152 5.84237 5.91573 5.93350 5.95293 6.07294 6.41131 6.51451 6.68615 7.08597 7.18267 7.20527 7.59696 7.69852 8.05843 8.37117 8.86318 9.44401 10.97513 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034260 B = 0.003838 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.081817 B = 7294.495473 C = 8080.738912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.225 4.225 3 C 0.311 3.689 4 N -0.847 5.847 5 C -0.223 4.223 6 C 0.519 3.481 7 O -0.529 6.529 8 O -0.352 6.352 9 C 0.083 3.917 10 C -0.010 4.010 11 C -0.528 4.528 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.881 3.119 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 C 0.016 3.984 20 C -0.229 4.229 21 C 0.178 3.822 22 F -0.134 7.134 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.421 0.579 27 H 0.395 0.605 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.150 0.850 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -14.778 -0.612 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.231 4.231 3 C 0.197 3.803 4 N -0.395 5.395 5 C -0.230 4.230 6 C 0.367 3.633 7 O -0.422 6.422 8 O -0.268 6.268 9 C 0.011 3.989 10 C -0.047 4.047 11 C -0.566 4.566 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.708 3.292 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.002 4.002 20 C -0.249 4.249 21 C 0.158 3.842 22 F -0.112 7.112 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.264 0.736 27 H 0.225 0.775 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.891 -14.304 -0.630 23.704 hybrid contribution 0.333 -0.446 0.072 0.561 sum -18.558 -14.750 -0.557 23.712 Atomic orbital electron populations 1.20484 0.89850 1.02922 1.02490 1.19142 0.96849 0.90394 1.16720 1.17155 0.89089 0.86508 0.87515 1.43587 1.10239 1.07305 1.78354 1.18626 0.90783 0.92296 1.21288 1.20748 0.81954 0.88307 0.72272 1.90432 1.69101 1.33717 1.48918 1.86547 1.19141 1.38843 1.82274 1.23429 0.93950 0.79666 1.01897 1.19632 0.88253 0.98913 0.97905 1.20831 0.92305 0.91590 1.51881 0.90660 1.24939 0.97624 0.96306 0.94139 1.69894 1.09742 1.24027 1.49828 0.86746 0.79743 0.83962 0.78737 1.20025 1.21167 1.18718 1.21142 1.00874 0.89598 0.88632 1.20808 0.91642 0.99859 1.12638 1.17474 0.89764 0.80246 0.96702 1.91484 1.80320 1.46261 1.93126 0.91180 0.91001 0.91690 0.73587 0.77525 0.91567 0.91557 0.95311 0.95737 0.92403 0.83248 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.42 36.00 0.34 -0.44 16 2 C -0.23 -2.39 5.90 -104.40 -0.62 -3.01 16 3 C 0.31 3.79 6.74 -83.62 -0.56 3.22 16 4 N -0.85 -9.20 8.84 32.54 0.29 -8.91 16 5 C -0.22 -3.10 5.89 -104.81 -0.62 -3.72 16 6 C 0.52 8.77 7.87 34.36 0.27 9.04 16 7 O -0.53 -9.51 13.43 -19.29 -0.26 -9.77 16 8 O -0.35 -6.52 9.48 -40.73 -0.39 -6.91 16 9 C 0.08 1.73 5.41 37.15 0.20 1.93 16 10 C -0.01 -0.23 4.42 -27.89 -0.12 -0.35 16 11 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 12 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 15 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 19 C 0.02 0.19 9.60 -39.20 -0.38 -0.18 16 20 C -0.23 -2.41 10.00 -39.55 -0.40 -2.80 16 21 C 0.18 1.94 7.24 -39.32 -0.28 1.65 16 22 F -0.13 -1.41 16.45 2.25 0.04 -1.38 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.52 7.63 -51.93 -0.40 0.13 16 25 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 26 H 0.42 5.36 5.34 -40.95 -0.22 5.14 16 27 H 0.40 3.07 6.78 -40.82 -0.28 2.79 16 28 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 33 H 0.15 1.67 7.62 -52.49 -0.40 1.27 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -30.72 295.40 -6.03 -36.75 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.67 Total: 3.50 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.60 Total: -7.85 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 1.06 Total: -35.31 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.65 Total: -16.68 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.72 -6.03 -36.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781800678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.277 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds