Wall clock time and date at job start Mon Mar 30 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38358 * 120.30801 * 2 1 4 4 N 1.31911 * 121.14392 * 180.02562 * 3 2 1 5 5 C 1.31942 * 121.84952 * 359.97438 * 4 3 2 6 6 F 1.35101 * 119.76201 * 180.02562 * 5 4 3 7 7 C 1.39951 * 120.47371 * 0.02562 * 5 4 3 8 8 C 1.47553 * 120.58029 * 179.97438 * 7 5 4 9 9 O 1.21485 * 120.00036 * 0.02562 * 8 7 5 10 10 O 1.34729 * 119.99731 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99812 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46857 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00204 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99565 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00144 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47376 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47084 * 120.00373 * 18 16 14 21 21 H 1.48497 * 109.47286 * 240.00177 * 18 16 14 22 22 C 1.38325 * 120.30716 * 180.31947 * 2 1 3 23 23 H 1.08992 * 109.47086 * 90.00826 * 1 2 3 24 24 H 1.08999 * 109.46991 * 210.00475 * 1 2 3 25 25 H 1.08998 * 109.47046 * 330.00115 * 1 2 3 26 26 H 1.07999 * 119.42690 * 0.03539 * 3 2 1 27 27 H 1.09004 * 109.47122 * 299.99959 * 11 10 8 28 28 H 1.09000 * 109.47070 * 59.99984 * 11 10 8 29 29 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 30 30 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 31 31 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 32 32 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 33 33 H 0.97002 * 119.99803 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.84692 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1945 0.0000 4 7 3.5242 1.2137 -0.0005 5 6 4.2367 0.1032 -0.0005 6 9 5.5860 0.1721 -0.0005 7 6 3.6048 -1.1455 -0.0006 8 6 4.3993 -2.3888 -0.0011 9 8 5.6129 -2.3342 -0.0012 10 8 3.7788 -3.5847 -0.0017 11 6 4.6236 -4.7657 -0.0017 12 6 3.7471 -6.0198 -0.0030 13 6 4.6373 -7.2641 -0.0023 14 6 3.7740 -8.4993 -0.0029 15 1 2.6980 -8.4061 -0.0042 16 6 4.3577 -9.7485 -0.0031 17 7 5.6680 -9.8620 -0.0021 18 14 3.2876 -11.2795 -0.0031 19 1 1.8565 -10.8832 -0.0037 20 1 3.5778 -12.0862 -1.2156 21 1 3.5778 -12.0863 1.2093 22 6 2.2050 -1.1942 -0.0067 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6609 2.1273 0.0006 27 1 5.2533 -4.7621 -0.8915 28 1 5.2526 -4.7625 0.8885 29 1 3.1172 -6.0237 0.8866 30 1 3.1184 -6.0227 -0.8934 31 1 5.2676 -7.2605 -0.8917 32 1 5.2657 -7.2609 0.8882 33 1 6.0787 -10.7408 -0.0018 34 1 1.6840 -2.1402 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870001743.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:16 Heat of formation + Delta-G solvation = -110.277203 kcal Electronic energy + Delta-G solvation = -19080.980405 eV Core-core repulsion = 15700.201347 eV Total energy + Delta-G solvation = -3380.779058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.23791 -40.88659 -39.79769 -36.52616 -34.19824 -33.97436 -32.75984 -31.64251 -27.53724 -27.26962 -25.36284 -23.80718 -22.76915 -20.97167 -20.37491 -18.40379 -18.02010 -17.44822 -16.71513 -16.67129 -16.03764 -15.99447 -15.04823 -14.49393 -14.32463 -14.12530 -14.03852 -13.95456 -13.33230 -12.97509 -12.81912 -12.55003 -12.23025 -12.22119 -11.90781 -11.02051 -10.81446 -10.70283 -10.59102 -10.46993 -10.42362 -10.15468 -9.78087 -9.55413 -9.27389 -9.18494 -8.41933 -6.06346 -4.09614 0.01456 0.57991 2.33600 2.54088 3.13848 3.19275 3.28050 3.35618 3.39429 3.94145 4.17078 4.30145 4.36628 4.42123 4.86017 5.04084 5.11688 5.14962 5.29755 5.40207 5.51836 5.54712 5.56048 5.63424 5.94083 6.04889 6.34596 6.47933 6.73953 6.92104 7.07259 7.56926 7.67327 7.73288 7.91728 8.32240 8.96803 9.54883 11.05111 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.003308 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.533985 B = 8462.994716 C = 9329.477344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.163 4.163 3 C 0.164 3.836 4 N -0.515 5.515 5 C 0.362 3.638 6 F -0.086 7.086 7 C -0.191 4.191 8 C 0.506 3.494 9 O -0.490 6.490 10 O -0.351 6.351 11 C 0.069 3.931 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.007 3.993 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.174 0.826 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 21.641 -0.019 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.165 4.165 3 C 0.007 3.993 4 N -0.229 5.229 5 C 0.208 3.792 6 F -0.064 7.064 7 C -0.196 4.196 8 C 0.348 3.652 9 O -0.379 6.379 10 O -0.268 6.268 11 C -0.004 4.004 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.018 4.018 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.191 0.809 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.813 22.258 -0.018 24.325 hybrid contribution -0.345 -1.679 -0.006 1.714 sum -10.158 20.578 -0.024 22.949 Atomic orbital electron populations 1.20732 0.88680 1.03888 1.03270 1.20996 0.98737 0.93286 1.03482 1.22757 0.87433 0.98491 0.90614 1.67209 1.09389 1.29429 1.16895 1.18131 0.79319 0.88212 0.93512 1.91744 1.26040 1.96685 1.91980 1.20051 0.95029 0.91312 1.13245 1.20517 0.86265 0.84263 0.74149 1.90912 1.14380 1.87969 1.44624 1.86510 1.42373 1.14613 1.83294 1.23612 0.93493 0.80727 1.02537 1.21782 0.99018 0.91780 1.02010 1.19062 0.94739 0.89802 0.97787 1.21196 0.93121 0.90646 1.51039 0.92363 1.25039 0.95000 0.99292 0.95177 1.69976 1.09015 1.23784 1.50490 0.86484 0.80639 0.82953 0.77627 1.19669 1.20965 1.20959 1.21894 0.91249 1.00035 0.88608 0.90311 0.90514 0.90696 0.80888 0.91191 0.91183 0.92063 0.92060 0.96163 0.96158 0.92906 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.03 36.01 0.36 -0.06 16 2 C -0.16 -1.14 5.89 -104.55 -0.62 -1.76 16 3 C 0.16 1.24 10.84 -17.47 -0.19 1.05 16 4 N -0.52 -5.89 10.36 -13.20 -0.14 -6.03 16 5 C 0.36 4.83 8.42 -16.86 -0.14 4.69 16 6 F -0.09 -1.32 15.59 2.25 0.04 -1.29 16 7 C -0.19 -2.45 5.90 -104.77 -0.62 -3.07 16 8 C 0.51 8.09 7.90 34.53 0.27 8.36 16 9 O -0.49 -9.28 15.16 -19.25 -0.29 -9.58 16 10 O -0.35 -5.68 9.55 -40.57 -0.39 -6.07 16 11 C 0.07 1.25 5.48 37.16 0.20 1.45 16 12 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.01 0.07 9.41 -38.87 -0.37 -0.30 16 23 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 25 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 26 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.16 1.31 7.70 -52.48 -0.40 0.90 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -32.62 308.72 -6.37 -38.99 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -4.17 Total: -6.28 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.79 Total: -4.80 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.60 Total: -31.92 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.68 Total: -15.64 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.62 -6.37 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870001743.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.290 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds