Wall clock time and date at job start Mon Mar 30 2020 00:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34343 * 125.49448 * 2 1 4 4 C 1.46750 * 106.01704 * 180.02562 * 3 2 1 5 5 C 1.48294 * 127.11927 * 179.97438 * 4 3 2 6 6 C 1.39836 * 119.53673 * 130.02813 * 5 4 3 7 7 C 1.37682 * 121.17210 * 179.97438 * 6 5 4 8 8 C 1.39606 * 120.18507 * 0.04427 * 7 6 5 9 9 C 1.43200 * 120.45529 * 179.97438 * 8 7 6 10 10 N 9.02439 * 151.49090 * 1.30120 * 2 1 3 11 11 C 1.46554 * 119.08913 * 0.25242 * 8 7 6 12 12 C 1.40854 * 120.55663 * 179.72263 * 11 8 7 13 13 H 1.08008 * 119.99684 * 24.36941 * 12 11 8 14 14 C 1.40218 * 120.00258 * 204.36097 * 12 11 8 15 15 N 1.30662 * 120.00473 * 17.26508 * 14 12 11 16 16 Si 1.86800 * 120.00007 * 197.25699 * 14 12 11 17 17 H 1.48504 * 109.47102 * 90.00048 * 16 14 12 18 18 H 1.48498 * 109.47683 * 210.00445 * 16 14 12 19 19 H 1.48506 * 109.47425 * 330.00478 * 16 14 12 20 20 C 1.38635 * 119.53924 * 310.00126 * 5 4 3 21 21 C 1.35893 * 105.75465 * 0.25754 * 4 3 2 22 22 C 1.50699 * 125.77254 * 179.73707 * 21 4 3 23 23 O 1.34041 * 108.44881 * 359.57831 * 21 4 3 24 24 H 1.09010 * 109.46934 * 90.00555 * 1 2 3 25 25 H 1.09001 * 109.47423 * 210.00365 * 1 2 3 26 26 H 1.09001 * 109.47725 * 330.00599 * 1 2 3 27 27 H 1.07996 * 126.99196 * 0.04990 * 3 2 1 28 28 H 1.08007 * 119.41406 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.90707 * 180.02562 * 7 6 5 30 30 H 0.96995 * 120.00466 * 184.66546 * 15 14 12 31 31 H 1.08007 * 120.13217 * 0.02903 * 20 5 4 32 32 H 1.09002 * 109.47153 * 90.00353 * 22 21 4 33 33 H 1.09004 * 109.47077 * 210.00553 * 22 21 4 34 34 H 1.08998 * 109.47616 * 330.00337 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2870 1.0938 0.0000 4 6 3.6706 0.6045 -0.0006 5 6 4.9085 1.4209 -0.0014 6 6 5.9153 1.1473 0.9297 7 6 7.0784 1.8835 0.9588 8 6 7.2722 2.9258 0.0504 9 6 8.4794 3.6956 0.0758 10 7 9.4371 4.3062 0.0978 11 6 6.2206 3.2252 -0.9255 12 6 6.3813 4.2736 -1.8523 13 1 7.3721 4.6022 -2.1295 14 6 5.2550 4.8907 -2.4151 15 7 4.0831 4.7467 -1.8555 16 14 5.4298 5.9187 -3.9649 17 1 5.2431 5.0529 -5.1569 18 1 4.4027 6.9912 -3.9662 19 1 6.7830 6.5293 -4.0039 20 6 5.0518 2.4443 -0.9256 21 6 3.5823 -0.7516 -0.0068 22 6 4.7452 -1.7100 -0.0154 23 8 2.2860 -1.0923 -0.0005 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.9620 2.1237 0.0008 28 1 5.7781 0.3442 1.6388 29 1 7.8427 1.6543 1.6865 30 1 3.2937 5.1164 -2.2810 31 1 4.2660 2.6445 -1.6390 32 1 5.0291 -1.9461 1.0102 33 1 4.4578 -2.6254 -0.5328 34 1 5.5899 -1.2519 -0.5299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242402238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:43 Heat of formation + Delta-G solvation = 39.167690 kcal Electronic energy + Delta-G solvation = -18905.752431 eV Core-core repulsion = 15962.223015 eV Total energy + Delta-G solvation = -2943.529416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92647 -37.71646 -35.18565 -34.24763 -32.77413 -32.66196 -29.94917 -29.70699 -28.70328 -25.73195 -24.50206 -22.66370 -21.23573 -20.58114 -18.96977 -17.58139 -16.90431 -16.05596 -15.86052 -15.28076 -14.33129 -13.99362 -13.38511 -13.31695 -13.22261 -13.10072 -12.80615 -12.66014 -12.48430 -12.40655 -12.09423 -11.83123 -11.71333 -11.60231 -11.41421 -11.25130 -11.13708 -10.72318 -10.63558 -10.02431 -9.79027 -9.46572 -9.04692 -7.99830 -7.74386 -7.31948 -7.04511 -4.70114 1.86299 2.27993 2.66685 2.93412 2.97993 2.99273 3.15634 3.25978 3.71754 3.93925 4.17653 4.47669 4.92809 5.26391 5.37323 5.42365 5.45441 5.53711 5.54986 5.70802 5.75814 5.86705 5.99723 6.09447 6.18610 6.39018 6.39649 6.65448 6.72950 6.89038 6.92440 7.04539 7.21752 7.52520 7.63491 7.70397 7.82693 7.91172 8.24104 8.45709 8.56792 8.84760 9.77895 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.006669 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.947497 B = 4197.634672 C = 5622.416414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.033 4.033 3 C -0.186 4.186 4 C -0.115 4.115 5 C 0.013 3.987 6 C -0.234 4.234 7 C -0.029 4.029 8 C -0.189 4.189 9 C 0.301 3.699 10 N -0.512 5.512 11 C 0.151 3.849 12 C -0.431 4.431 13 H 0.085 0.915 14 C 0.077 3.923 15 N -0.764 5.764 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.142 4.142 21 C -0.019 4.019 22 C -0.064 4.064 23 O -0.187 6.187 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.289 0.711 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -8.603 0.510 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 C -0.205 4.205 4 C -0.117 4.117 5 C 0.012 3.988 6 C -0.253 4.253 7 C -0.050 4.050 8 C -0.195 4.195 9 C -0.009 4.009 10 N -0.192 5.192 11 C 0.146 3.854 12 C -0.459 4.459 13 H 0.103 0.897 14 C -0.145 4.145 15 N -0.386 5.386 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.161 4.161 21 C -0.068 4.068 22 C -0.121 4.121 23 O -0.087 6.087 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.168 0.832 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.205 -7.804 0.570 10.636 hybrid contribution -0.465 0.529 -0.635 0.948 sum -7.670 -7.275 -0.064 10.572 Atomic orbital electron populations 1.20208 0.85665 1.03438 1.03002 1.22066 0.93496 0.84318 1.08307 1.22691 0.91569 0.99086 1.07177 1.20300 0.93554 0.91620 1.06182 1.17844 0.90246 0.94621 0.96101 1.20083 0.95549 1.05313 1.04395 1.20354 0.95949 0.93309 0.95389 1.16980 0.93140 1.03915 1.05462 1.25817 0.92058 0.91716 0.91261 1.81014 1.13554 1.12521 1.12082 1.18356 0.89077 0.90166 0.87826 1.19766 0.94356 1.12828 1.18923 0.89680 1.26059 0.94548 0.95926 0.98008 1.69721 1.00079 1.34155 1.34650 0.86207 0.79897 0.79507 0.80896 1.18686 1.19790 1.18112 1.21325 0.99382 0.94895 1.00514 1.22391 0.82413 0.94417 1.07603 1.20251 0.92320 0.96479 1.03032 1.83635 1.16445 1.35181 1.73406 0.90635 0.91145 0.89685 0.83201 0.88524 0.88256 0.89916 0.85451 0.90606 0.91459 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.41 36.01 0.37 -0.33 16 2 C -0.03 -0.52 7.29 -35.68 -0.26 -0.78 16 3 C -0.19 -3.32 11.00 -37.52 -0.41 -3.73 16 4 C -0.12 -2.22 5.74 -103.16 -0.59 -2.81 16 5 C 0.01 0.28 5.46 -105.02 -0.57 -0.30 16 6 C -0.23 -4.64 8.86 -39.19 -0.35 -4.99 16 7 C -0.03 -0.60 9.74 -39.27 -0.38 -0.98 16 8 C -0.19 -4.38 5.95 -104.11 -0.62 -5.00 16 9 C 0.30 7.16 14.28 -22.47 -0.32 6.83 16 10 N -0.51 -12.51 18.54 41.84 0.78 -11.73 16 11 C 0.15 3.70 5.73 -104.68 -0.60 3.10 16 12 C -0.43 -10.67 8.58 -37.85 -0.32 -11.00 16 13 H 0.09 2.14 7.37 -52.48 -0.39 1.75 16 14 C 0.08 1.77 5.16 -17.31 -0.09 1.68 16 15 N -0.76 -17.64 10.95 55.56 0.61 -17.04 16 16 Si 0.91 17.47 29.60 -169.99 -5.03 12.43 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.14 -3.31 8.38 -38.56 -0.32 -3.64 16 21 C -0.02 -0.33 7.34 -35.15 -0.26 -0.59 16 22 C -0.06 -0.86 9.52 36.01 0.34 -0.52 16 23 O -0.19 -3.12 10.55 6.78 0.07 -3.05 16 24 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.10 1.70 7.84 -52.48 -0.41 1.29 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 31 H 0.13 3.07 6.18 -52.48 -0.32 2.75 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.29 7.70 -51.93 -0.40 0.89 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -27.11 308.59 -6.93 -34.03 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.62 Total: 3.74 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -4.39 Total: -23.03 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 1.38 Total: -28.77 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.07 Total: -3.05 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.11 -6.93 -34.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242402238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.201 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds