Wall clock time and date at job start Mon Mar 30 2020 01:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32659 * 1 3 3 C 1.47708 * 119.99984 * 2 1 4 4 C 1.40128 * 120.44860 * 180.02562 * 3 2 1 5 5 C 1.38032 * 118.39438 * 179.72410 * 4 3 2 6 6 C 1.39560 * 119.21466 * 0.27500 * 5 4 3 7 7 C 1.48104 * 119.58148 * 179.97438 * 6 5 4 8 8 C 1.39400 * 120.16771 * 359.72219 * 7 6 5 9 9 C 1.37965 * 119.93243 * 179.71962 * 8 7 6 10 10 C 1.38476 * 120.28477 * 0.58034 * 9 8 7 11 11 C 1.38092 * 120.34966 * 359.69805 * 10 9 8 12 12 C 1.38772 * 120.05186 * 359.97438 * 11 10 9 13 13 O 1.35637 * 120.13822 * 180.02562 * 12 11 10 14 14 C 1.34805 * 117.00218 * 354.40941 * 13 12 11 15 15 H 1.08005 * 119.99830 * 5.05638 * 14 13 12 16 16 C 1.38657 * 119.99982 * 185.06115 * 14 13 12 17 17 N 1.31548 * 119.99967 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00054 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47093 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47201 * 119.99856 * 18 16 14 21 21 H 1.48503 * 109.47513 * 240.00044 * 18 16 14 22 22 N 1.32777 * 120.83567 * 359.97438 * 6 5 4 23 23 C 1.31556 * 121.75685 * 0.02562 * 22 6 5 24 24 H 1.07999 * 120.00071 * 179.97438 * 1 2 3 25 25 H 1.07994 * 119.99603 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99603 * 179.97438 * 2 1 3 27 27 H 1.08001 * 120.80464 * 359.97438 * 4 3 2 28 28 H 1.08008 * 120.39031 * 180.29566 * 5 4 3 29 29 H 1.07999 * 120.03179 * 0.02562 * 8 7 6 30 30 H 1.08000 * 119.85345 * 180.29808 * 9 8 7 31 31 H 1.08001 * 119.82504 * 179.71374 * 10 9 8 32 32 H 1.07999 * 119.97681 * 180.02562 * 11 10 9 33 33 H 0.97005 * 120.00045 * 180.02562 * 17 16 14 34 34 H 1.07995 * 119.65022 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3266 0.0000 0.0000 3 6 2.0651 1.2792 0.0000 4 6 3.4664 1.2902 -0.0005 5 6 4.1132 2.5095 -0.0064 6 6 3.3564 3.6821 -0.0056 7 6 4.0421 4.9948 -0.0113 8 6 5.4347 5.0578 -0.0114 9 6 6.0684 6.2832 -0.0226 10 6 5.3270 7.4528 -0.0215 11 6 3.9470 7.4042 -0.0155 12 6 3.2948 6.1793 -0.0112 13 8 1.9393 6.1294 -0.0058 14 6 1.2842 7.3017 0.1119 15 1 1.8355 8.2305 0.1144 16 6 -0.0972 7.3151 0.2299 17 7 -0.7686 6.1838 0.2275 18 14 -1.0050 8.9394 0.3938 19 1 -0.0276 10.0572 0.3700 20 1 -1.9569 9.0907 -0.7359 21 1 -1.7521 8.9618 1.6770 22 7 2.0295 3.6357 0.0001 23 6 1.3766 2.4936 0.0057 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8665 -0.9353 0.0004 27 1 4.0267 0.3669 -0.0005 28 1 5.1923 2.5556 -0.0118 29 1 6.0169 4.1482 -0.0079 30 1 7.1473 6.3305 -0.0275 31 1 5.8308 8.4081 -0.0255 32 1 3.3747 8.3201 -0.0151 33 1 -1.7351 6.1931 0.3097 34 1 0.2967 2.4955 0.0098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:47 Heat of formation + Delta-G solvation = 62.512125 kcal Electronic energy + Delta-G solvation = -19105.788273 eV Core-core repulsion = 16163.271147 eV Total energy + Delta-G solvation = -2942.517125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.76786 -38.60037 -36.33985 -34.36519 -32.31110 -31.81147 -31.02664 -28.99069 -27.75457 -25.35932 -23.85056 -23.05097 -21.46971 -20.66170 -19.60076 -17.94023 -17.26560 -16.36956 -15.62860 -15.05689 -14.72720 -14.14718 -14.12145 -13.83576 -13.79464 -13.39275 -13.07706 -12.99194 -12.43911 -12.38730 -11.66727 -11.48595 -11.40557 -11.15780 -10.92684 -10.74790 -10.62154 -10.43166 -10.41829 -9.36751 -9.14622 -8.85132 -8.60947 -8.40651 -7.65950 -6.95203 -6.42600 -3.97023 0.99352 1.89340 2.18539 2.40936 3.00529 3.12881 3.14124 3.18908 3.96189 4.39232 4.83042 4.86292 5.06836 5.14109 5.18287 5.26447 5.30053 5.36497 5.58675 5.66733 5.78486 5.92491 5.96471 6.14650 6.21507 6.31808 6.50632 6.55240 6.68800 6.72473 6.80152 6.94823 7.09214 7.14190 7.34897 7.36145 7.42455 7.80386 7.98373 8.87161 8.99907 9.75445 10.71697 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.007742 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.708187 B = 3615.734908 C = 5683.479649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.189 4.189 6 C 0.197 3.803 7 C -0.149 4.149 8 C -0.048 4.048 9 C -0.226 4.226 10 C -0.060 4.060 11 C -0.240 4.240 12 C 0.176 3.824 13 O -0.116 6.116 14 C -0.398 4.398 15 H 0.091 0.909 16 C 0.045 3.955 17 N -0.834 5.834 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.428 5.428 23 C 0.128 3.872 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.268 0.732 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -6.792 -0.226 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.121 4.121 3 C -0.156 4.156 4 C -0.094 4.094 5 C -0.209 4.209 6 C 0.062 3.938 7 C -0.152 4.152 8 C -0.067 4.067 9 C -0.245 4.245 10 C -0.079 4.079 11 C -0.259 4.259 12 C 0.117 3.883 13 O -0.014 6.014 14 C -0.474 4.474 15 H 0.108 0.892 16 C -0.162 4.162 17 N -0.466 5.466 18 Si 0.762 3.238 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.135 5.135 23 C -0.033 4.033 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.413 -6.264 -0.227 8.282 hybrid contribution 0.077 0.061 0.087 0.131 sum 5.490 -6.203 -0.140 8.285 Atomic orbital electron populations 1.24338 0.95711 1.02216 1.00687 1.21607 0.95042 0.95182 1.00220 1.20070 0.94028 0.94780 1.06706 1.21380 0.93362 0.97613 0.97011 1.21903 1.00735 0.92700 1.05542 1.19928 0.89308 0.92055 0.92476 1.17623 0.91819 0.89050 1.16701 1.20719 0.92024 0.97361 0.96616 1.20449 0.98510 0.92353 1.13230 1.20850 0.93505 0.97383 0.96119 1.21158 0.94635 0.98026 1.12062 1.19372 0.85398 0.92054 0.91513 1.84256 1.11371 1.32026 1.73747 1.21537 0.90003 0.84105 1.51744 0.89180 1.25276 0.95642 0.98837 0.96427 1.70123 1.07717 1.25425 1.43330 0.85720 0.79497 0.80374 0.78257 1.19112 1.20166 1.20161 1.68148 1.07831 1.27946 1.09601 1.23090 1.00385 0.86413 0.93376 0.88152 0.87714 0.87031 0.85676 0.85352 0.86712 0.87394 0.87415 0.85340 0.92241 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 14.16 28.84 0.41 -2.03 16 2 C -0.10 -1.38 9.93 -37.61 -0.37 -1.75 16 3 C -0.15 -2.58 5.89 -104.81 -0.62 -3.20 16 4 C -0.07 -1.07 9.92 -38.95 -0.39 -1.45 16 5 C -0.19 -3.27 9.44 -39.16 -0.37 -3.64 16 6 C 0.20 4.28 6.73 -82.92 -0.56 3.73 16 7 C -0.15 -3.31 5.89 -104.74 -0.62 -3.93 16 8 C -0.05 -0.88 9.41 -39.25 -0.37 -1.25 16 9 C -0.23 -3.91 10.03 -39.59 -0.40 -4.31 16 10 C -0.06 -1.10 10.03 -39.55 -0.40 -1.50 16 11 C -0.24 -5.25 9.16 -39.44 -0.36 -5.61 16 12 C 0.18 4.35 6.65 -38.71 -0.26 4.09 16 13 O -0.12 -3.29 7.58 0.47 0.00 -3.29 16 14 C -0.40 -11.00 9.49 30.89 0.29 -10.71 16 15 H 0.09 2.32 5.21 -52.48 -0.27 2.04 16 16 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 17 N -0.83 -23.74 13.67 55.48 0.76 -22.98 16 18 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 N -0.43 -10.26 8.12 -9.48 -0.08 -10.33 16 23 C 0.13 2.61 10.57 -17.16 -0.18 2.43 16 24 H 0.10 1.02 8.06 -52.49 -0.42 0.59 16 25 H 0.10 1.43 6.05 -52.49 -0.32 1.11 16 26 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.13 1.83 6.17 -52.48 -0.32 1.51 16 29 H 0.12 1.71 6.17 -52.49 -0.32 1.38 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.15 2.98 6.17 -52.49 -0.32 2.66 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -31.13 297.04 -7.25 -38.38 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.11 Total: 6.51 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -4.28 Total: -28.02 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.68 Total: -33.32 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.00 Total: -3.29 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.13 -7.25 -38.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.888 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds