Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46990 * 2 1 4 4 H 1.09001 * 109.47042 * 55.00256 * 3 2 1 5 5 C 1.50699 * 109.46885 * 175.00191 * 3 2 1 6 6 H 1.08001 * 119.99894 * 120.00611 * 5 3 2 7 7 C 1.37874 * 120.00033 * 299.99997 * 5 3 2 8 8 N 1.31511 * 120.00362 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99933 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47253 * 60.00100 * 9 7 5 11 11 H 1.48503 * 109.47210 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47158 * 300.00373 * 9 7 5 13 13 N 1.46896 * 109.47359 * 295.00434 * 3 2 1 14 14 C 1.46463 * 111.00115 * 174.99848 * 13 3 2 15 15 C 1.53324 * 111.28545 * 189.58701 * 14 13 3 16 16 C 1.53142 * 108.03692 * 296.80544 * 15 14 13 17 17 H 1.08998 * 111.50164 * 292.47358 * 16 15 14 18 18 S 1.81383 * 111.23744 * 167.98007 * 16 15 14 19 19 C 1.77319 * 94.81838 * 240.82079 * 18 16 15 20 20 O 1.21665 * 126.70102 * 182.54570 * 19 18 16 21 21 C 1.46232 * 106.59340 * 2.56796 * 19 18 16 22 22 C 1.30406 * 118.68575 * 0.07994 * 21 19 18 23 23 C 1.47490 * 110.99989 * 300.70400 * 13 3 2 24 24 H 1.09001 * 109.47106 * 59.99412 * 1 2 3 25 25 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46988 * 299.99665 * 1 2 3 27 27 H 1.09004 * 109.46673 * 240.00748 * 2 1 3 28 28 H 1.09000 * 109.47288 * 120.00067 * 2 1 3 29 29 H 0.97002 * 120.00064 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.11700 * 69.12558 * 14 13 3 31 31 H 1.08995 * 109.06896 * 310.02125 * 14 13 3 32 32 H 1.08997 * 109.75496 * 177.16994 * 15 14 13 33 33 H 1.09000 * 109.74766 * 56.43557 * 15 14 13 34 34 H 1.08000 * 120.65567 * 180.02562 * 21 19 18 35 35 H 1.09000 * 110.08379 * 61.69533 * 23 13 3 36 36 H 1.08994 * 110.08951 * 300.07343 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4064 0.3366 2.1728 9 14 6.0050 0.8812 1.3816 10 1 6.4995 2.2815 1.3820 11 1 6.3980 0.2166 2.6502 12 1 6.5975 0.1474 0.2347 13 7 1.6513 2.0994 -1.2551 14 6 2.0196 3.5169 -1.2417 15 6 1.4125 4.2610 -2.4369 16 6 2.0048 3.6649 -3.7172 17 1 3.0685 3.8858 -3.8058 18 16 1.0995 4.2286 -5.1844 19 6 0.5986 2.6026 -5.6841 20 8 -0.0357 2.3113 -6.6806 21 6 1.0963 1.6804 -4.6641 22 6 1.7612 2.1654 -3.6526 23 6 2.2087 1.3861 -2.4196 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.8295 -0.0612 2.9497 30 1 3.1054 3.6040 -1.2811 31 1 1.6586 3.9698 -0.3184 32 1 1.6599 5.3207 -2.3754 33 1 0.3299 4.1344 -2.4383 34 1 0.9160 0.6188 -4.7466 35 1 1.8185 0.3691 -2.4576 36 1 3.2970 1.3688 -2.3622 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = -15.085270 kcal Electronic energy + Delta-G solvation = -18726.722419 eV Core-core repulsion = 15916.284369 eV Total energy + Delta-G solvation = -2810.438050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47698 -38.47304 -35.80857 -33.17627 -32.03965 -30.72222 -27.86778 -26.68412 -24.65895 -22.95887 -22.81409 -21.00274 -19.31544 -18.89082 -17.39499 -16.65954 -15.80480 -15.42968 -14.99453 -14.80087 -14.45911 -13.87169 -13.70084 -13.57039 -12.97924 -12.88463 -12.78134 -12.24153 -11.88332 -11.50915 -11.33229 -11.17049 -10.91121 -10.78865 -10.72848 -10.44770 -10.20065 -9.83216 -9.60393 -9.55023 -9.47847 -9.27251 -8.52310 -8.48832 -7.39346 -6.14753 -4.29817 0.78015 1.33320 1.86222 2.64997 3.17389 3.24053 3.25897 4.05355 4.26059 4.43931 4.72562 4.85439 5.05299 5.11006 5.38143 5.54629 5.73356 5.77801 5.88724 5.92027 6.16838 6.22848 6.30121 6.35645 6.40016 6.53502 6.56055 6.92756 7.02884 7.05073 7.11809 7.42342 7.58311 7.69911 7.93825 8.05868 8.23659 8.77879 9.39100 10.84626 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.005724 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.743649 B = 4890.115325 C = 5284.211267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.218 3.782 4 H 0.045 0.955 5 C -0.553 4.553 6 H 0.056 0.944 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.535 5.535 14 C 0.064 3.936 15 C -0.095 4.095 16 C -0.045 4.045 17 H 0.132 0.868 18 S -0.223 6.223 19 C 0.424 3.576 20 O -0.422 6.422 21 C -0.259 4.259 22 C -0.006 4.006 23 C 0.105 3.895 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 4.088 -7.214 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.112 3.888 4 H 0.063 0.937 5 C -0.592 4.592 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.519 5.519 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.066 4.066 15 C -0.134 4.134 16 C -0.174 4.174 17 H 0.150 0.850 18 S 0.014 5.986 19 C 0.194 3.806 20 O -0.301 6.301 21 C -0.286 4.286 22 C -0.010 4.010 23 C -0.024 4.024 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.172 0.828 35 H 0.113 0.887 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.146 5.038 -8.113 10.055 hybrid contribution 2.220 -1.114 0.642 2.565 sum -0.926 3.923 -7.471 8.489 Atomic orbital electron populations 1.21729 0.98642 0.98671 1.00726 1.21665 0.92426 0.98967 1.02234 1.19327 0.93278 0.91258 0.84927 0.93671 1.21629 0.92554 1.39078 1.05899 0.92601 1.24881 0.97910 0.94725 0.95573 1.69844 1.35087 1.37589 1.09348 0.86737 0.85935 0.78298 0.77526 1.20297 1.21150 1.20292 1.62260 1.58961 1.01110 1.03641 1.21830 0.98576 0.89578 0.96618 1.21846 1.01633 0.99250 0.90672 1.23442 1.03078 0.95417 0.95463 0.84990 1.87095 1.62728 1.17608 1.31144 1.24368 0.79476 0.90173 0.86608 1.90667 1.34743 1.78909 1.25782 1.22410 1.06362 1.02318 0.97483 1.23095 0.89748 0.93770 0.94405 1.21540 0.99231 0.96641 0.84989 0.93395 0.95429 0.94032 0.94807 0.88671 0.92599 0.93931 0.90205 0.90352 0.89939 0.82811 0.88668 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.22 16 2 C -0.11 -2.41 5.02 -26.73 -0.13 -2.54 16 3 C 0.22 4.67 1.74 -68.87 -0.12 4.55 16 4 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 5 C -0.55 -13.02 7.17 -34.44 -0.25 -13.27 16 6 H 0.06 1.30 5.96 -52.49 -0.31 0.99 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -22.84 11.29 55.43 0.63 -22.21 16 9 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.54 -9.46 4.03 -227.97 -0.92 -10.38 16 14 C 0.06 1.02 4.89 -3.89 -0.02 1.00 16 15 C -0.09 -1.23 5.59 -26.49 -0.15 -1.38 16 16 C -0.05 -0.59 3.59 -27.14 -0.10 -0.69 16 17 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 18 S -0.22 -3.09 22.79 -107.50 -2.45 -5.54 16 19 C 0.42 6.49 8.10 33.94 0.27 6.76 16 20 O -0.42 -7.42 18.05 5.22 0.09 -7.32 16 21 C -0.26 -3.61 9.99 -37.92 -0.38 -3.99 16 22 C -0.01 -0.08 5.46 -99.30 -0.54 -0.62 16 23 C 0.10 1.68 5.17 -3.72 -0.02 1.66 16 24 H 0.05 0.85 7.75 -51.93 -0.40 0.44 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.68 6.17 -51.93 -0.32 0.36 16 28 H 0.10 2.29 5.95 -51.93 -0.31 1.99 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.04 0.71 7.04 -51.93 -0.37 0.35 16 31 H 0.08 1.30 7.97 -51.93 -0.41 0.88 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 35 H 0.10 1.53 6.31 -51.93 -0.33 1.21 16 36 H 0.07 1.23 6.57 -51.93 -0.34 0.89 16 LS Contribution 297.67 15.07 4.49 4.49 Total: -1.00 -25.33 297.67 -9.23 -34.56 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.88 Total: 0.97 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.29 Total: -32.59 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.45 Total: -5.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.33 -9.23 -34.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.475 kcal (2) G-P(sol) polarization free energy of solvation -25.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds