Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46990 * 2 1 4 4 H 1.09001 * 109.47042 * 55.00256 * 3 2 1 5 5 C 1.50699 * 109.46885 * 175.00191 * 3 2 1 6 6 H 1.08001 * 119.99894 * 120.00611 * 5 3 2 7 7 C 1.37874 * 120.00033 * 299.99997 * 5 3 2 8 8 N 1.31511 * 120.00362 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99933 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47253 * 60.00100 * 9 7 5 11 11 H 1.48503 * 109.47210 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47158 * 300.00373 * 9 7 5 13 13 N 1.46896 * 109.47359 * 295.00434 * 3 2 1 14 14 C 1.46463 * 111.00115 * 174.99848 * 13 3 2 15 15 C 1.53324 * 111.28545 * 189.58701 * 14 13 3 16 16 C 1.53142 * 108.03692 * 296.80544 * 15 14 13 17 17 H 1.08998 * 111.50164 * 292.47358 * 16 15 14 18 18 S 1.81383 * 111.23744 * 167.98007 * 16 15 14 19 19 C 1.77319 * 94.81838 * 240.82079 * 18 16 15 20 20 O 1.21665 * 126.70102 * 182.54570 * 19 18 16 21 21 C 1.46232 * 106.59340 * 2.56796 * 19 18 16 22 22 C 1.30406 * 118.68575 * 0.07994 * 21 19 18 23 23 C 1.47490 * 110.99989 * 300.70400 * 13 3 2 24 24 H 1.09001 * 109.47106 * 59.99412 * 1 2 3 25 25 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46988 * 299.99665 * 1 2 3 27 27 H 1.09004 * 109.46673 * 240.00748 * 2 1 3 28 28 H 1.09000 * 109.47288 * 120.00067 * 2 1 3 29 29 H 0.97002 * 120.00064 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.11700 * 69.12558 * 14 13 3 31 31 H 1.08995 * 109.06896 * 310.02125 * 14 13 3 32 32 H 1.08997 * 109.75496 * 177.16994 * 15 14 13 33 33 H 1.09000 * 109.74766 * 56.43557 * 15 14 13 34 34 H 1.08000 * 120.65567 * 180.02562 * 21 19 18 35 35 H 1.09000 * 110.08379 * 61.69533 * 23 13 3 36 36 H 1.08994 * 110.08951 * 300.07343 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4064 0.3366 2.1728 9 14 6.0050 0.8812 1.3816 10 1 6.4995 2.2815 1.3820 11 1 6.3980 0.2166 2.6502 12 1 6.5975 0.1474 0.2347 13 7 1.6513 2.0994 -1.2551 14 6 2.0196 3.5169 -1.2417 15 6 1.4125 4.2610 -2.4369 16 6 2.0048 3.6649 -3.7172 17 1 3.0685 3.8858 -3.8058 18 16 1.0995 4.2286 -5.1844 19 6 0.5986 2.6026 -5.6841 20 8 -0.0357 2.3113 -6.6806 21 6 1.0963 1.6804 -4.6641 22 6 1.7612 2.1654 -3.6526 23 6 2.2087 1.3861 -2.4196 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 3.8295 -0.0612 2.9497 30 1 3.1054 3.6040 -1.2811 31 1 1.6586 3.9698 -0.3184 32 1 1.6599 5.3207 -2.3754 33 1 0.3299 4.1344 -2.4383 34 1 0.9160 0.6188 -4.7466 35 1 1.8185 0.3691 -2.4576 36 1 3.2970 1.3688 -2.3622 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = -28.298595 kcal Electronic energy + Delta-G solvation = -18727.295392 eV Core-core repulsion = 15916.284369 eV Total energy + Delta-G solvation = -2811.011022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73010 -39.77320 -37.25342 -34.64354 -33.64636 -32.14127 -29.27059 -28.22063 -26.09621 -24.48380 -24.05862 -22.30036 -20.93691 -20.09945 -18.60681 -18.35264 -17.10321 -16.89827 -16.34103 -16.05642 -15.97892 -15.30587 -15.06433 -14.80994 -14.54763 -14.16650 -14.12399 -13.59245 -13.23856 -13.10756 -12.98398 -12.78684 -12.52166 -12.24323 -12.06179 -11.87363 -11.66519 -11.52520 -11.14335 -10.96573 -10.72872 -10.68898 -10.37204 -9.61766 -8.92410 -7.99949 -6.22259 -0.39780 0.19271 0.74010 1.42340 1.45515 1.48870 1.50070 2.43453 2.91538 3.19638 3.24051 3.42437 3.73710 4.02673 4.19997 4.35574 4.45874 4.62038 4.69793 4.72687 4.77301 4.80013 4.94814 4.95956 5.04223 5.16288 5.28045 5.32717 5.47954 5.50777 5.66304 5.83615 5.85691 6.05025 6.17617 6.38692 6.60842 6.96837 7.49412 8.94882 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.005724 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.743649 B = 4890.115325 C = 5284.211267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C 0.225 3.775 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.535 5.535 14 C 0.065 3.935 15 C -0.082 4.082 16 C -0.044 4.044 17 H 0.151 0.849 18 S -0.202 6.202 19 C 0.417 3.583 20 O -0.451 6.451 21 C -0.252 4.252 22 C -0.003 4.003 23 C 0.109 3.891 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.260 0.740 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.095 0.905 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 4.878 -8.425 9.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C 0.119 3.881 4 H 0.030 0.970 5 C -0.590 4.590 6 H 0.076 0.924 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.259 5.259 14 C -0.066 4.066 15 C -0.121 4.121 16 C -0.173 4.173 17 H 0.168 0.832 18 S 0.036 5.964 19 C 0.189 3.811 20 O -0.332 6.332 21 C -0.279 4.279 22 C -0.008 4.008 23 C -0.019 4.019 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.184 0.816 35 H 0.113 0.887 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.891 5.851 -9.334 11.390 hybrid contribution 2.135 -1.318 1.006 2.703 sum -0.756 4.533 -8.328 9.512 Atomic orbital electron populations 1.21595 0.96566 0.99721 1.00705 1.21517 0.94237 0.98287 1.00847 1.19039 0.91924 0.91431 0.85742 0.97008 1.21939 0.93851 1.37816 1.05425 0.92387 1.25521 1.01153 0.94980 0.95707 1.69980 1.36248 1.38790 1.09798 0.85898 0.82109 0.78158 0.77148 1.20004 1.21664 1.19913 1.62155 1.59044 1.02025 1.02684 1.21855 0.98257 0.88613 0.97832 1.21747 1.01107 1.00184 0.89074 1.23530 1.04080 0.94502 0.95159 0.83166 1.87076 1.62202 1.16255 1.30877 1.24582 0.79040 0.91111 0.86337 1.90662 1.36013 1.79714 1.26828 1.22453 1.05672 1.02910 0.96865 1.22823 0.90012 0.94278 0.93641 1.21420 0.98568 0.96846 0.85096 0.92419 0.93851 0.94914 0.94255 0.91893 0.93022 0.94748 0.91054 0.87810 0.90245 0.81638 0.88698 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.80 71.98 0.71 -3.92 16 2 C -0.11 -4.64 5.02 30.60 0.15 -4.49 16 3 C 0.23 9.70 1.74 44.17 0.08 9.78 16 4 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 5 C -0.55 -25.94 7.17 25.60 0.18 -25.76 16 6 H 0.06 2.66 5.96 -2.91 -0.02 2.64 16 7 C 0.03 1.34 5.29 84.65 0.45 1.78 16 8 N -0.91 -48.05 11.29 21.45 0.24 -47.81 16 9 Si 0.94 39.92 29.54 68.60 2.03 41.95 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.53 -18.38 4.03 -875.16 -3.53 -21.91 16 14 C 0.06 1.95 4.89 86.49 0.42 2.37 16 15 C -0.08 -1.90 5.59 30.75 0.17 -1.73 16 16 C -0.04 -1.02 3.59 30.33 0.11 -0.91 16 17 H 0.15 3.00 8.14 -2.39 -0.02 2.99 16 18 S -0.20 -5.04 22.79 -56.49 -1.29 -6.33 16 19 C 0.42 11.94 8.10 69.90 0.57 12.51 16 20 O -0.45 -15.24 18.05 -4.24 -0.08 -15.31 16 21 C -0.25 -6.46 9.99 24.92 0.25 -6.21 16 22 C 0.00 -0.07 5.46 -14.84 -0.08 -0.15 16 23 C 0.11 3.34 5.17 86.05 0.44 3.79 16 24 H 0.06 1.95 7.75 -2.39 -0.02 1.93 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.57 6.17 -2.38 -0.01 1.56 16 28 H 0.06 3.09 5.95 -2.39 -0.01 3.08 16 29 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 30 H 0.03 1.10 7.04 -2.39 -0.02 1.08 16 31 H 0.07 2.27 7.97 -2.39 -0.02 2.25 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.09 2.90 6.31 -2.39 -0.02 2.89 16 36 H 0.06 2.03 6.57 -2.39 -0.02 2.01 16 Total: -1.00 -53.67 297.67 1.90 -51.76 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.08 Total: 10.58 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 3.45 Total: -12.92 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -3.29 Total: -69.72 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.08 Total: -15.31 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.29 Total: -6.33 kcal Total: -53.67 1.90 -51.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.462 kcal (2) G-P(sol) polarization free energy of solvation -53.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds