Wall clock time and date at job start Mon Mar 30 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 H 1.09000 * 109.47197 * 54.99959 * 3 2 1 5 5 F 1.39896 * 109.47438 * 294.99827 * 3 2 1 6 6 C 1.50700 * 109.47047 * 174.99987 * 3 2 1 7 7 O 1.21291 * 120.00068 * 44.99986 * 6 3 2 8 8 N 1.34780 * 120.00150 * 225.00169 * 6 3 2 9 9 C 1.39989 * 120.00259 * 185.21518 * 8 6 3 10 10 C 1.38918 * 120.00078 * 213.39537 * 9 8 6 11 11 C 1.38003 * 119.99985 * 179.78706 * 10 9 8 12 12 C 1.38910 * 119.99657 * 0.48694 * 11 10 9 13 13 O 1.35787 * 119.99546 * 179.72484 * 12 11 10 14 14 C 1.34817 * 116.99518 * 185.93226 * 13 12 11 15 15 H 1.07997 * 120.00336 * 5.39784 * 14 13 12 16 16 C 1.38636 * 119.99539 * 185.40258 * 14 13 12 17 17 N 1.31566 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99736 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47119 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47175 * 120.00009 * 18 16 14 21 21 H 1.48495 * 109.47129 * 239.99925 * 18 16 14 22 22 C 1.38901 * 120.00707 * 359.74115 * 12 11 10 23 23 C 1.38010 * 119.99907 * 0.02856 * 22 12 11 24 24 H 1.08997 * 109.46964 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46956 * 299.99957 * 1 2 3 26 26 H 1.08999 * 109.46572 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.46956 * 240.00042 * 2 1 3 28 28 H 1.08999 * 109.46572 * 119.99846 * 2 1 3 29 29 H 0.97005 * 119.99702 * 4.93308 * 8 6 3 30 30 H 1.08002 * 120.00037 * 0.02562 * 10 9 8 31 31 H 1.07996 * 120.00345 * 180.20877 * 11 10 9 32 32 H 0.97005 * 120.00225 * 179.97438 * 17 16 14 33 33 H 1.08002 * 120.00233 * 179.97438 * 22 12 11 34 34 H 1.07997 * 119.99682 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6700 2.0680 -1.1954 6 6 3.5420 1.4442 0.1238 7 8 4.2065 0.6810 -0.5447 8 7 4.1468 2.2940 0.9775 9 6 5.5439 2.3731 1.0140 10 6 6.1936 2.6365 2.2133 11 6 7.5712 2.7101 2.2501 12 6 8.3076 2.5309 1.0860 13 8 9.6628 2.6090 1.1212 14 6 10.3101 2.5484 -0.0598 15 1 9.7495 2.5304 -0.9827 16 6 11.6956 2.5092 -0.0895 17 7 12.3786 2.5316 1.0348 18 14 12.5926 2.4246 -1.7259 19 1 11.6028 2.4107 -2.8328 20 1 13.4774 3.6089 -1.8672 21 1 13.4108 1.1865 -1.7784 22 6 7.6579 2.2723 -0.1141 23 6 6.2805 2.1940 -0.1501 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.6138 2.8537 1.5637 30 1 5.6208 2.7797 3.1176 31 1 8.0765 2.9115 3.1831 32 1 13.3480 2.5038 1.0140 33 1 8.2305 2.1335 -1.0192 34 1 5.7753 1.9933 -1.0833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336839059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:57 Heat of formation + Delta-G solvation = -113.472749 kcal Electronic energy + Delta-G solvation = -19406.970565 eV Core-core repulsion = 16026.052938 eV Total energy + Delta-G solvation = -3380.917627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -48.96083 -41.52394 -40.36223 -38.24981 -35.54352 -34.94891 -34.19095 -31.91633 -30.27519 -28.27772 -27.18141 -24.25827 -23.60530 -22.48767 -21.49882 -20.03651 -19.31353 -18.68494 -18.27128 -17.42788 -16.78538 -16.33240 -16.19136 -15.97318 -15.53498 -15.36443 -15.25813 -14.78188 -14.68176 -14.21001 -13.93668 -13.60928 -13.40655 -13.26423 -13.16832 -12.86594 -12.73301 -12.49704 -12.12775 -12.01257 -11.84471 -11.40424 -11.23489 -10.87094 -10.57544 -9.88759 -8.67197 -8.49795 -6.16390 0.41356 0.49208 1.33315 1.34270 1.45043 1.51858 1.85519 2.16159 2.78111 3.12066 3.31061 3.46953 3.52830 3.67993 3.90515 4.03240 4.08174 4.40799 4.44547 4.50445 4.60034 4.68074 4.75709 5.04024 5.05944 5.07505 5.16499 5.28461 5.36504 5.38211 5.51535 5.66069 5.99291 6.08654 6.36243 6.95082 7.02988 7.73594 8.73230 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037315 B = 0.003668 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.197666 B = 7632.021951 C = 8107.326846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.093 3.907 4 H 0.152 0.848 5 F -0.202 7.202 6 C 0.478 3.522 7 O -0.554 6.554 8 N -0.637 5.637 9 C 0.056 3.944 10 C -0.071 4.071 11 C -0.179 4.179 12 C 0.109 3.891 13 O -0.225 6.225 14 C -0.414 4.414 15 H 0.096 0.904 16 C -0.019 4.019 17 N -0.916 5.916 18 Si 1.016 2.984 19 H -0.257 1.257 20 H -0.265 1.265 21 H -0.267 1.267 22 C -0.229 4.229 23 C -0.077 4.077 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.431 0.569 30 H 0.173 0.827 31 H 0.132 0.868 32 H 0.274 0.726 33 H 0.115 0.885 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.289 -0.649 1.481 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.054 3.946 4 H 0.169 0.831 5 F -0.183 7.183 6 C 0.264 3.736 7 O -0.431 6.431 8 N -0.285 5.285 9 C -0.037 4.037 10 C -0.091 4.091 11 C -0.198 4.198 12 C 0.058 3.942 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.114 0.886 16 C -0.217 4.217 17 N -0.554 5.554 18 Si 0.835 3.165 19 H -0.180 1.180 20 H -0.189 1.189 21 H -0.192 1.192 22 C -0.249 4.249 23 C -0.097 4.097 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.271 0.729 30 H 0.190 0.810 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.524 -1.140 1.220 22.586 hybrid contribution 0.812 0.139 -0.731 1.102 sum -21.712 -1.000 0.489 21.740 Atomic orbital electron populations 1.21761 0.92188 1.03412 1.03175 1.22030 0.98771 0.92750 1.04536 1.21817 0.88595 0.97666 0.86548 0.83064 1.92868 1.91717 1.84173 1.49534 1.21909 0.92082 0.79681 0.79890 1.90759 1.67330 1.40097 1.44913 1.43217 1.04230 1.40491 1.40528 1.17385 0.83264 1.09458 0.93636 1.20808 0.92343 0.99198 0.96739 1.20371 0.93800 1.09256 0.96416 1.19958 0.84411 0.94716 0.95098 1.83951 1.14462 1.81301 1.33448 1.21788 0.90212 1.53208 0.83783 0.88640 1.26518 0.95998 0.95784 1.03407 1.70172 1.07966 1.48579 1.28719 0.84567 0.78023 0.78749 0.75118 1.18013 1.18942 1.19235 1.21067 0.94989 1.10546 0.98272 1.20768 0.92558 0.98474 0.97911 0.91024 0.90163 0.92603 0.91927 0.88736 0.72934 0.80987 0.84986 0.91700 0.86673 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.83 71.98 0.71 -0.77 16 2 C -0.14 -2.15 5.41 30.60 0.17 -1.98 16 3 C 0.09 1.50 3.78 29.85 0.11 1.61 16 4 H 0.15 0.91 7.98 -2.39 -0.02 0.89 16 5 F -0.20 -4.34 16.75 44.97 0.75 -3.59 16 6 C 0.48 12.08 6.91 87.66 0.61 12.69 16 7 O -0.55 -19.96 14.31 -3.07 -0.04 -20.01 16 8 N -0.64 -14.26 5.34 -303.38 -1.62 -15.88 16 9 C 0.06 1.81 6.28 38.16 0.24 2.05 16 10 C -0.07 -2.17 9.96 22.38 0.22 -1.95 16 11 C -0.18 -7.18 9.99 22.37 0.22 -6.96 16 12 C 0.11 5.46 6.65 22.59 0.15 5.61 16 13 O -0.23 -13.58 9.76 -23.02 -0.22 -13.81 16 14 C -0.41 -24.57 9.44 67.92 0.64 -23.93 16 15 H 0.10 5.34 5.29 -2.91 -0.02 5.33 16 16 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 17 N -0.92 -56.27 13.67 21.61 0.30 -55.98 16 18 Si 1.02 43.81 29.55 68.60 2.03 45.84 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 C -0.23 -10.78 9.13 22.37 0.20 -10.57 16 23 C -0.08 -3.11 8.65 22.38 0.19 -2.92 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.64 7.94 -2.39 -0.02 0.63 16 27 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.43 5.16 8.70 -92.70 -0.81 4.36 16 30 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 32 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 33 H 0.12 5.65 5.71 -2.91 -0.02 5.63 16 34 H 0.12 4.77 6.43 -2.91 -0.02 4.76 16 Total: -1.00 -78.81 301.14 5.45 -73.36 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.33 Total: 17.81 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 3.93 Total: -27.75 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.32 Total: -71.86 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.27 Total: -33.81 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.75 Total: -3.59 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -78.81 5.45 -73.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336839059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.113 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds