Wall clock time and date at job start Mon Mar 30 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48497 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47068 * 299.99644 * 3 2 1 6 6 H 1.48502 * 109.47130 * 59.99700 * 3 2 1 7 7 C 1.37873 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99601 * 0.02562 * 7 2 1 10 10 O 1.42892 * 110.64114 * 298.30786 * 9 7 2 11 11 C 1.55153 * 110.72016 * 61.45513 * 9 7 2 12 12 C 1.54913 * 101.58565 * 153.86439 * 11 9 7 13 13 N 1.47426 * 104.82832 * 322.98920 * 12 11 9 14 14 C 1.34773 * 125.64885 * 204.09428 * 13 12 11 15 15 O 1.21283 * 120.00360 * 179.74789 * 14 13 12 16 16 C 1.50706 * 120.00081 * 0.02562 * 14 13 12 17 17 N 1.46493 * 109.47128 * 179.72554 * 16 14 13 18 18 C 1.34602 * 126.43755 * 125.00052 * 17 16 14 19 19 N 1.31071 * 106.68103 * 179.97438 * 18 17 16 20 20 N 1.28841 * 107.98997 * 0.02562 * 19 18 17 21 21 N 1.28733 * 109.39545 * 359.73289 * 20 19 18 22 22 C 1.47020 * 108.70406 * 24.35319 * 13 12 11 23 23 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 24 24 H 0.96695 * 114.00347 * 61.69517 * 10 9 7 25 25 H 1.08997 * 111.00767 * 35.78543 * 11 9 7 26 26 H 1.09007 * 111.03534 * 271.95304 * 11 9 7 27 27 H 1.08996 * 110.37051 * 204.15273 * 12 11 9 28 28 H 1.08996 * 110.36736 * 81.82517 * 12 11 9 29 29 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 30 30 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 31 31 H 1.08005 * 126.65625 * 0.03636 * 18 17 16 32 32 H 1.08995 * 109.88193 * 118.13363 * 22 13 12 33 33 H 1.08997 * 109.88501 * 239.29737 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4496 -2.6180 1.1775 11 6 0.3766 -2.6280 -1.2745 12 6 0.2721 -4.1662 -1.4259 13 7 1.5932 -4.6763 -1.0160 14 6 2.1334 -5.8515 -1.3946 15 8 3.2347 -6.1686 -0.9976 16 6 1.3716 -6.7690 -2.3161 17 7 2.1699 -7.9686 -2.5803 18 6 1.7851 -9.2437 -2.3861 19 7 2.7928 -10.0000 -2.7475 20 7 3.7469 -9.2296 -3.1424 21 7 3.3720 -8.0017 -3.0476 22 6 2.2211 -3.6934 -0.1210 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2285 -1.9340 1.2624 25 1 0.8744 -2.1836 -2.1364 26 1 -0.6065 -2.1828 -1.1214 27 1 0.0677 -4.4324 -2.4629 28 1 -0.5060 -4.5597 -0.7719 29 1 0.4301 -7.0549 -1.8472 30 1 1.1682 -6.2539 -3.2549 31 1 0.8307 -9.5787 -2.0072 32 1 2.3884 -4.1388 0.8596 33 1 3.1678 -3.3580 -0.5444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346082203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:47 Heat of formation + Delta-G solvation = 47.284472 kcal Electronic energy + Delta-G solvation = -20293.867823 eV Core-core repulsion = 16972.133865 eV Total energy + Delta-G solvation = -3321.733958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.19493 -39.88089 -37.66257 -35.42356 -34.59702 -32.48076 -32.35131 -30.50597 -29.21473 -28.20677 -25.30812 -23.86973 -23.47050 -22.47619 -20.13206 -19.29863 -17.93227 -17.53663 -17.22764 -16.47302 -16.10784 -15.72813 -15.10724 -14.92470 -14.41017 -14.22233 -13.41011 -13.20517 -12.91430 -12.39595 -12.23795 -12.12875 -11.84335 -11.60434 -11.48886 -11.20201 -11.15944 -11.02870 -10.82777 -10.55229 -10.43109 -10.28352 -9.81114 -9.52630 -8.80400 -8.41878 -8.34600 -6.41852 -4.49450 1.19328 1.75676 2.24087 2.52266 3.06356 3.11614 3.21499 3.26918 4.01673 4.11178 4.17262 4.33031 4.56203 4.72808 4.85938 5.23208 5.34357 5.49441 5.59986 5.64620 5.75118 5.88971 6.01659 6.22946 6.42328 6.66359 6.72339 7.10888 7.17102 7.60503 7.68415 7.85751 8.13738 8.53881 8.58138 9.15139 9.25282 10.65785 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.046000 B = 0.004173 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.550534 B = 6708.333182 C = 6946.073783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.134 4.134 12 C 0.087 3.913 13 N -0.600 5.600 14 C 0.509 3.491 15 O -0.525 6.525 16 C 0.099 3.901 17 N -0.296 5.296 18 C 0.157 3.843 19 N -0.310 5.310 20 N -0.084 5.084 21 N -0.060 5.060 22 C 0.124 3.876 23 H 0.268 0.732 24 H 0.384 0.616 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.235 0.765 32 H 0.064 0.936 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 -8.955 -4.786 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.036 4.036 13 N -0.334 5.334 14 C 0.293 3.707 15 O -0.401 6.401 16 C -0.026 4.026 17 N -0.098 5.098 18 C -0.142 4.142 19 N -0.158 5.158 20 N -0.078 5.078 21 N -0.046 5.046 22 C 0.003 3.997 23 H 0.078 0.922 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.251 0.749 32 H 0.083 0.917 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.158 -9.834 -4.985 11.783 hybrid contribution -1.145 1.807 0.274 2.157 sum -5.303 -8.027 -4.711 10.712 Atomic orbital electron populations 1.69685 1.05962 1.27714 1.50172 1.24972 0.95047 0.99601 0.93278 0.86349 0.80250 0.82567 0.77791 1.19524 1.20758 1.20689 1.21535 0.93811 0.90058 1.52059 0.91611 1.19468 0.86917 0.90612 0.82277 1.86128 1.51846 1.56551 1.44942 1.23323 1.03175 0.89650 1.01169 1.22683 0.83936 0.98532 0.98416 1.48590 1.19767 1.17484 1.47546 1.19599 0.86736 0.81805 0.82534 1.90821 1.19537 1.73705 1.56072 1.22042 0.93740 0.83484 1.03380 1.48194 1.11372 1.08593 1.41668 1.27704 1.03090 0.80353 1.03017 1.74953 0.98195 1.27079 1.15559 1.78653 1.19678 0.93240 1.16211 1.79034 0.94796 1.17611 1.13179 1.22170 0.96994 0.88147 0.92403 0.92163 0.76594 0.91161 0.89027 0.91870 0.91263 0.84113 0.84826 0.74934 0.91741 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.47 10.67 55.43 0.59 -20.88 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.17 8.22 -34.44 -0.28 -13.46 16 8 H 0.07 1.65 7.58 -52.49 -0.40 1.25 16 9 C 0.25 5.41 0.85 -89.93 -0.08 5.33 16 10 O -0.59 -13.37 13.07 -35.23 -0.46 -13.83 16 11 C -0.13 -2.51 5.47 -24.58 -0.13 -2.64 16 12 C 0.09 1.22 6.68 -2.53 -0.02 1.20 16 13 N -0.60 -9.91 3.33 -170.51 -0.57 -10.47 16 14 C 0.51 7.95 7.87 -10.98 -0.09 7.87 16 15 O -0.53 -10.70 16.04 5.56 0.09 -10.61 16 16 C 0.10 0.95 5.98 -5.19 -0.03 0.92 16 17 N -0.30 -3.68 3.19 -63.74 -0.20 -3.88 16 18 C 0.16 1.61 12.79 -90.39 -1.16 0.46 16 19 N -0.31 -4.47 12.36 29.59 0.37 -4.11 16 20 N -0.08 -1.42 13.43 60.35 0.81 -0.61 16 21 N -0.06 -0.99 12.30 60.35 0.74 -0.24 16 22 C 0.12 2.53 6.23 -3.06 -0.02 2.51 16 23 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 24 H 0.38 8.79 7.46 45.56 0.34 9.13 16 25 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 26 H 0.09 1.79 7.54 -51.93 -0.39 1.40 16 27 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.14 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.13 0.96 7.84 -51.93 -0.41 0.55 16 31 H 0.23 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.08 1.63 7.66 -51.93 -0.40 1.24 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -31.84 288.83 -4.07 -35.92 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -2.88 Total: 6.14 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.90 Total: 3.88 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 1.74 Total: -40.19 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.37 Total: -24.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.84 -4.07 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.202 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds