Wall clock time and date at job start Mon Mar 30 2020 00:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99966 * 2 1 4 4 H 1.48499 * 109.47154 * 240.00037 * 3 2 1 5 5 H 1.48503 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47129 * 119.99968 * 3 2 1 7 7 C 1.38945 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00187 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00410 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00156 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47326 * 179.97438 * 12 10 9 14 14 C 1.34783 * 120.00381 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99295 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46917 * 179.97438 * 16 14 13 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 14 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 0.97004 * 120.00420 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99692 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47562 * 59.99756 * 12 10 9 26 26 H 1.08996 * 109.47228 * 299.99458 * 12 10 9 27 27 H 0.97003 * 120.00071 * 359.97438 * 13 12 10 28 28 H 1.08995 * 109.47077 * 59.99566 * 16 14 13 29 29 H 1.08996 * 109.46865 * 299.99656 * 16 14 13 30 30 H 1.09002 * 109.46649 * 59.99907 * 17 16 14 31 31 H 1.09000 * 109.47178 * 300.00184 * 17 16 14 32 32 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 33 33 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7467 -7.2471 0.0027 15 8 0.5543 -7.4687 0.0028 16 6 2.7260 -8.3925 0.0038 17 6 1.9610 -9.7176 0.0043 18 7 2.9130 -10.8311 0.0047 19 6 2.9502 -11.8420 0.9033 20 6 3.9768 -12.6411 0.5297 21 7 4.5108 -12.0869 -0.5645 22 7 3.8584 -11.0154 -0.8492 23 1 -0.4851 0.8400 -0.0004 24 1 0.3534 -2.3907 0.0005 25 1 0.6175 -4.9213 -0.8880 26 1 0.6170 -4.9201 0.8920 27 1 3.1496 -5.7991 0.0022 28 1 3.3520 -8.3344 0.8942 29 1 3.3533 -8.3350 -0.8857 30 1 1.3348 -9.7758 -0.8860 31 1 1.3340 -9.7748 0.8940 32 1 2.2930 -11.9830 1.7486 33 1 4.3016 -13.5474 1.0192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459885208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:18 Heat of formation + Delta-G solvation = -4.273591 kcal Electronic energy + Delta-G solvation = -18873.956343 eV Core-core repulsion = 15549.986659 eV Total energy + Delta-G solvation = -3323.969683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.16468 -41.09221 -39.95588 -36.40614 -36.15470 -35.32319 -33.39781 -32.28875 -31.89183 -29.39400 -26.86637 -25.64411 -23.57968 -22.47241 -21.42765 -21.31677 -20.07955 -19.00655 -18.08572 -17.57559 -17.20354 -16.95714 -16.78916 -16.29903 -16.05937 -15.72002 -15.67470 -15.13281 -14.69430 -14.36341 -13.94570 -13.65119 -13.54810 -13.51788 -12.91684 -12.79112 -12.48335 -12.41973 -12.14697 -11.84614 -11.57511 -11.26617 -11.03001 -10.57808 -10.30532 -10.24225 -10.09802 -8.52330 -6.02558 0.68273 1.33042 1.37075 1.42580 1.49079 1.52974 1.66607 1.90289 2.07866 2.31756 3.11214 3.15045 3.40138 3.62475 3.69138 3.82744 4.19293 4.25755 4.29061 4.36310 4.41931 4.44359 4.49728 4.66006 4.90116 5.21650 5.31431 5.37082 5.66238 5.90357 6.40193 6.48629 7.02302 7.06114 7.43183 7.55213 7.93600 8.64181 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.060135 B = 0.002734 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.509558 B =10238.517075 C =10578.244445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.430 3.570 11 O -0.626 6.626 12 C 0.121 3.879 13 N -0.707 5.707 14 C 0.526 3.474 15 O -0.573 6.573 16 C -0.142 4.142 17 C 0.134 3.866 18 N -0.290 5.290 19 C -0.032 4.032 20 C -0.066 4.066 21 N -0.314 5.314 22 N -0.128 5.128 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.414 0.586 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.235 0.765 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -19.293 4.311 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.217 3.783 11 O -0.514 6.514 12 C -0.007 4.007 13 N -0.361 5.361 14 C 0.313 3.687 15 O -0.454 6.454 16 C -0.183 4.183 17 C 0.013 3.987 18 N -0.084 5.084 19 C -0.183 4.183 20 C -0.224 4.224 21 N -0.179 5.179 22 N -0.107 5.107 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.252 0.748 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.251 0.749 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.056 -18.684 3.023 18.956 hybrid contribution -0.333 0.796 0.806 1.181 sum 0.723 -17.887 3.829 18.307 Atomic orbital electron populations 1.69662 1.06953 1.29725 1.49179 1.26103 0.96530 1.02635 0.95763 0.84952 0.77755 0.76355 0.79091 1.19585 1.19615 1.19475 1.19686 0.92945 0.83618 1.50530 0.89660 1.41846 1.09621 1.04632 1.63379 1.20506 0.88149 0.86059 0.83551 1.90485 1.15289 1.87572 1.58086 1.20801 0.91625 0.83673 1.04557 1.45737 1.11563 1.04740 1.74053 1.20547 0.89287 0.83653 0.75221 1.90716 1.17811 1.85128 1.51719 1.21756 0.98306 0.90713 1.07526 1.21944 0.88053 0.80563 1.08145 1.47714 1.22559 1.19670 1.18458 1.24479 1.03962 0.90243 0.99618 1.24279 0.97308 1.04383 0.96434 1.75077 1.23339 1.03591 1.15923 1.78285 1.00833 1.15169 1.16396 0.91033 0.76634 0.88576 0.88261 0.74751 0.86219 0.86924 0.87534 0.84129 0.74877 0.76519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.72 13.05 21.66 0.28 -47.44 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.10 29.55 68.60 2.03 43.13 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.34 -18.29 9.68 84.04 0.81 -17.47 16 8 H 0.09 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.56 -27.20 5.29 -306.99 -1.62 -28.83 16 10 C 0.43 18.95 7.85 87.66 0.69 19.64 16 11 O -0.63 -31.33 15.24 -3.08 -0.05 -31.37 16 12 C 0.12 4.00 6.15 85.63 0.53 4.53 16 13 N -0.71 -20.10 5.53 -466.79 -2.58 -22.68 16 14 C 0.53 12.72 7.83 87.66 0.69 13.40 16 15 O -0.57 -16.65 15.98 -3.04 -0.05 -16.70 16 16 C -0.14 -2.38 5.83 29.85 0.17 -2.21 16 17 C 0.13 1.89 5.74 86.38 0.50 2.39 16 18 N -0.29 -4.98 3.44 -347.74 -1.20 -6.18 16 19 C -0.03 -0.37 11.57 83.49 0.97 0.59 16 20 C -0.07 -1.03 12.05 83.73 1.01 -0.02 16 21 N -0.31 -7.81 12.41 -58.26 -0.72 -8.53 16 22 N -0.13 -3.15 12.91 37.02 0.48 -2.67 16 23 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 24 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 25 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.41 11.91 7.44 -92.71 -0.69 11.22 16 28 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.99 8.12 -2.39 -0.02 1.97 16 30 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.14 1.33 8.03 -2.39 -0.02 1.31 16 32 H 0.23 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -71.64 302.52 2.14 -69.49 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.26 Total: 30.94 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 5.83 Total: 20.83 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -5.36 Total: -116.33 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.10 Total: -48.07 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -71.64 2.14 -69.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459885208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.221 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds