Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 119.99905 * 2 1 4 4 C 1.50697 * 109.47129 * 269.99933 * 3 2 1 5 5 H 1.08004 * 120.00054 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99987 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99802 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46972 * 89.99965 * 8 6 4 10 10 H 1.48494 * 109.46896 * 210.00003 * 8 6 4 11 11 H 1.48500 * 109.47132 * 330.00182 * 8 6 4 12 12 C 1.34780 * 120.00506 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00434 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99575 * 0.02562 * 12 2 1 15 15 C 1.52996 * 109.47094 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47210 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 1.09002 * 109.47230 * 269.99843 * 1 2 3 23 23 H 1.09001 * 109.47284 * 30.00025 * 1 2 3 24 24 H 1.09004 * 109.47048 * 150.00038 * 1 2 3 25 25 H 1.08995 * 109.46831 * 29.99912 * 3 2 1 26 26 H 1.09004 * 109.47224 * 150.00190 * 3 2 1 27 27 H 0.96999 * 119.99767 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47561 * 59.99923 * 14 12 2 29 29 H 1.09000 * 109.46976 * 299.99617 * 14 12 2 30 30 H 1.09000 * 109.47531 * 59.99538 * 15 14 12 31 31 H 1.09008 * 109.47250 * 300.00113 * 15 14 12 32 32 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 33 33 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.3447 3.2579 -2.9126 8 14 3.7316 3.9300 -0.2529 9 1 5.1049 3.5093 0.1242 10 1 3.7464 5.3566 -0.6649 11 1 2.8248 3.7603 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 6 1.6147 -4.9602 0.0025 17 6 2.5941 -6.1057 0.0031 18 6 3.0937 -6.6895 1.0934 19 6 3.9784 -7.7252 0.8470 20 6 4.1968 -7.9828 -0.4434 21 16 3.2473 -6.8821 -1.4335 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6083 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 3.8208 4.0842 -3.0898 28 1 0.7591 -2.5303 -0.8896 29 1 0.7585 -2.5299 0.8903 30 1 3.0057 -3.5770 0.8922 31 1 3.0071 -3.5778 -0.8878 32 1 0.9885 -5.0186 -0.8878 33 1 0.9877 -5.0173 0.8922 34 1 2.8283 -6.3776 2.0927 35 1 4.4550 -8.2831 1.6395 36 1 4.8532 -8.7521 -0.8223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -13.550470 kcal Electronic energy + Delta-G solvation = -17359.461052 eV Core-core repulsion = 14549.089556 eV Total energy + Delta-G solvation = -2810.371496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14466 -38.05500 -35.11345 -34.49355 -32.52832 -30.56874 -28.53334 -26.73020 -25.74065 -23.78650 -22.39634 -21.16066 -19.35516 -18.40808 -17.20289 -16.95150 -16.17283 -15.72792 -15.40852 -15.23541 -14.32527 -13.88527 -13.56625 -13.21502 -12.98880 -12.72805 -12.51499 -12.39560 -12.21485 -12.02302 -11.71755 -11.56850 -11.53443 -11.17830 -10.90271 -10.83121 -10.55941 -10.49751 -10.13113 -9.53104 -8.98488 -8.71403 -8.57814 -8.56829 -7.67650 -6.07633 -4.06272 0.90268 1.54234 1.91622 2.64226 3.30122 3.36100 3.37866 3.39362 3.88532 4.40710 4.63039 4.92450 4.97631 4.99615 5.21215 5.25237 5.38660 5.43942 5.50909 5.56927 5.65406 5.68159 5.83237 5.86221 5.98650 6.16979 6.18285 6.24719 6.39893 6.45271 6.71854 6.96539 7.36370 7.62662 8.28135 8.48600 8.94465 9.02433 9.52808 11.05841 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.003498 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.520892 B = 8002.587309 C = 8253.183039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.504 3.496 13 O -0.542 6.542 14 C -0.138 4.138 15 C -0.098 4.098 16 C -0.051 4.051 17 C -0.161 4.161 18 C -0.147 4.147 19 C -0.132 4.132 20 C -0.223 4.223 21 S 0.097 5.903 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 -20.004 7.745 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.333 5.333 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.291 3.709 13 O -0.419 6.419 14 C -0.178 4.178 15 C -0.137 4.137 16 C -0.090 4.090 17 C -0.279 4.279 18 C -0.177 4.177 19 C -0.163 4.163 20 C -0.358 4.358 21 S 0.360 5.640 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.302 -19.643 6.076 21.234 hybrid contribution 0.542 0.442 2.018 2.136 sum -4.760 -19.201 8.095 21.374 Atomic orbital electron populations 1.21653 0.81004 1.02988 1.00365 1.47866 1.06258 1.07224 1.71942 1.19650 0.92460 0.80184 0.98304 1.21343 1.36965 1.07100 0.91315 0.90814 1.24871 0.95243 0.97377 0.95603 1.69899 1.41544 1.23551 1.18664 0.86833 0.80132 0.79707 0.82912 1.19895 1.21066 1.19082 1.20408 0.88144 0.85194 0.77131 1.90669 1.14028 1.87293 1.49917 1.21684 0.99288 0.93232 1.03619 1.21345 0.97455 0.90587 1.04294 1.20244 0.95086 0.90465 1.03230 1.24567 1.04957 1.02826 0.95529 1.20121 1.00129 0.98085 0.99391 1.20159 1.00411 0.99369 0.96370 1.25583 1.07465 1.05818 0.96946 1.84385 1.40902 1.28781 1.09919 0.93729 0.90668 0.92078 0.95319 0.94608 0.92573 0.89286 0.89548 0.90899 0.90832 0.90669 0.89918 0.84370 0.84522 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.24 59.84 0.61 1.88 16 2 N -0.60 -12.46 2.86 -182.95 -0.52 -12.98 16 3 C 0.21 5.34 4.23 -5.19 -0.02 5.32 16 4 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 5 H 0.07 2.36 8.06 -52.48 -0.42 1.93 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 8 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.50 10.25 7.67 -10.98 -0.08 10.16 16 13 O -0.54 -13.49 15.56 5.56 0.09 -13.40 16 14 C -0.14 -1.90 4.25 -27.88 -0.12 -2.02 16 15 C -0.10 -1.33 4.49 -26.73 -0.12 -1.45 16 16 C -0.05 -0.52 5.71 -27.88 -0.16 -0.68 16 17 C -0.16 -1.80 5.76 -36.00 -0.21 -2.01 16 18 C -0.15 -1.55 10.05 -41.21 -0.41 -1.96 16 19 C -0.13 -1.29 10.18 -41.21 -0.42 -1.71 16 20 C -0.22 -2.17 11.23 29.04 0.33 -1.85 16 21 S 0.10 1.06 23.33 -107.50 -2.51 -1.45 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 24 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 29 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.07 1.16 8.10 -51.92 -0.42 0.74 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -34.81 318.31 -8.34 -43.15 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.25 Total: -1.94 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.05 Total: -8.10 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.25 Total: -40.21 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.81 -8.34 -43.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.603 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds