Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 119.99905 * 2 1 4 4 C 1.50697 * 109.47129 * 269.99933 * 3 2 1 5 5 H 1.08004 * 120.00054 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99987 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99802 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46972 * 89.99965 * 8 6 4 10 10 H 1.48494 * 109.46896 * 210.00003 * 8 6 4 11 11 H 1.48500 * 109.47132 * 330.00182 * 8 6 4 12 12 C 1.34780 * 120.00506 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00434 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99575 * 0.02562 * 12 2 1 15 15 C 1.52996 * 109.47094 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47210 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 1.09002 * 109.47230 * 269.99843 * 1 2 3 23 23 H 1.09001 * 109.47284 * 30.00025 * 1 2 3 24 24 H 1.09004 * 109.47048 * 150.00038 * 1 2 3 25 25 H 1.08995 * 109.46831 * 29.99912 * 3 2 1 26 26 H 1.09004 * 109.47224 * 150.00190 * 3 2 1 27 27 H 0.96999 * 119.99767 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47561 * 59.99923 * 14 12 2 29 29 H 1.09000 * 109.46976 * 299.99617 * 14 12 2 30 30 H 1.09000 * 109.47531 * 59.99538 * 15 14 12 31 31 H 1.09008 * 109.47250 * 300.00113 * 15 14 12 32 32 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 33 33 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.3447 3.2579 -2.9126 8 14 3.7316 3.9300 -0.2529 9 1 5.1049 3.5093 0.1242 10 1 3.7464 5.3566 -0.6649 11 1 2.8248 3.7603 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 6 1.6147 -4.9602 0.0025 17 6 2.5941 -6.1057 0.0031 18 6 3.0937 -6.6895 1.0934 19 6 3.9784 -7.7252 0.8470 20 6 4.1968 -7.9828 -0.4434 21 16 3.2473 -6.8821 -1.4335 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6083 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 3.8208 4.0842 -3.0898 28 1 0.7591 -2.5303 -0.8896 29 1 0.7585 -2.5299 0.8903 30 1 3.0057 -3.5770 0.8922 31 1 3.0071 -3.5778 -0.8878 32 1 0.9885 -5.0186 -0.8878 33 1 0.9877 -5.0173 0.8922 34 1 2.8283 -6.3776 2.0927 35 1 4.4550 -8.2831 1.6395 36 1 4.8532 -8.7521 -0.8223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -35.893758 kcal Electronic energy + Delta-G solvation = -17360.429929 eV Core-core repulsion = 14549.089556 eV Total energy + Delta-G solvation = -2811.340373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70215 -38.85564 -36.69863 -35.65205 -34.68242 -31.74430 -30.24012 -27.78500 -27.14951 -25.03137 -23.80627 -22.36646 -20.14170 -19.89248 -19.16002 -18.17807 -17.55731 -17.04442 -16.83530 -16.37268 -15.97640 -15.27421 -14.80076 -14.50431 -14.30888 -13.97876 -13.71506 -13.62278 -13.45796 -13.33817 -13.22080 -12.86658 -12.65050 -12.46724 -12.43742 -12.21015 -12.01745 -11.76049 -11.71651 -11.48537 -10.84723 -10.63037 -9.51773 -9.39059 -9.36871 -8.35560 -6.40810 0.11840 0.76090 1.14220 1.31454 1.35966 1.44488 1.84582 1.87936 2.29959 2.40312 2.98839 3.73602 3.76901 4.05475 4.24155 4.29814 4.37923 4.51116 4.57678 4.68926 4.70973 4.72750 4.75839 4.87135 4.91331 4.98213 5.02701 5.12470 5.30544 5.38128 5.43273 5.45467 5.63993 5.65364 6.23077 6.60514 6.74034 7.20547 7.46378 8.81561 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.003498 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.520892 B = 8002.587309 C = 8253.183039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.490 3.510 13 O -0.601 6.601 14 C -0.123 4.123 15 C -0.092 4.092 16 C -0.041 4.041 17 C -0.179 4.179 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.222 4.222 21 S 0.060 5.940 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.269 0.731 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -20.890 10.276 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.099 3.901 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.160 1.160 12 C 0.280 3.720 13 O -0.483 6.483 14 C -0.162 4.162 15 C -0.131 4.131 16 C -0.080 4.080 17 C -0.296 4.296 18 C -0.181 4.181 19 C -0.172 4.172 20 C -0.357 4.357 21 S 0.323 5.677 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.986 -20.551 8.615 23.353 hybrid contribution 1.055 0.640 1.160 1.694 sum -5.932 -19.912 9.776 22.961 Atomic orbital electron populations 1.21995 0.77403 1.04083 1.03078 1.48032 1.08601 1.05978 1.71615 1.19314 0.92729 0.82897 0.95145 1.21597 1.36866 1.06717 0.92505 0.95473 1.25901 0.95278 0.99018 0.98738 1.70053 1.42744 1.24493 1.21333 0.85678 0.79508 0.77723 0.79803 1.20308 1.19842 1.15987 1.21644 0.87932 0.87026 0.75439 1.90634 1.16926 1.88284 1.52480 1.21710 0.98983 0.88910 1.06608 1.21242 0.97324 0.92591 1.01918 1.20188 0.94728 0.87983 1.05083 1.24745 1.05862 1.03601 0.95434 1.20452 0.99721 0.97925 0.99987 1.20493 1.00302 0.99392 0.96988 1.25889 1.07262 1.05761 0.96784 1.84488 1.42022 1.29954 1.11240 0.90011 0.91936 0.88798 0.93177 0.96612 0.92242 0.87060 0.85211 0.92426 0.94286 0.89631 0.87123 0.82759 0.82236 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.24 127.77 1.31 3.38 16 2 N -0.61 -24.70 2.86 -851.13 -2.43 -27.13 16 3 C 0.22 11.00 4.23 85.63 0.36 11.36 16 4 C -0.54 -32.37 9.94 25.60 0.25 -32.12 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.51 5.47 84.66 0.46 0.97 16 7 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 8 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 12 C 0.49 19.69 7.67 87.66 0.67 20.36 16 13 O -0.60 -30.94 15.56 -3.03 -0.05 -30.98 16 14 C -0.12 -3.07 4.25 29.85 0.13 -2.94 16 15 C -0.09 -2.40 4.49 30.59 0.14 -2.26 16 16 C -0.04 -0.74 5.71 29.85 0.17 -0.57 16 17 C -0.18 -3.77 5.76 24.59 0.14 -3.63 16 18 C -0.15 -2.89 10.05 21.22 0.21 -2.68 16 19 C -0.14 -2.50 10.18 21.22 0.22 -2.29 16 20 C -0.22 -4.05 11.23 66.72 0.75 -3.30 16 21 S 0.06 1.29 23.33 -56.49 -1.32 -0.02 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.86 8.07 -2.39 -0.02 1.84 16 24 H 0.09 1.92 6.44 -2.39 -0.02 1.90 16 25 H 0.05 2.26 7.13 -2.39 -0.02 2.25 16 26 H 0.02 0.84 6.85 -2.38 -0.02 0.83 16 27 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.11 2.34 7.40 -2.39 -0.02 2.33 16 29 H 0.13 2.19 8.11 -2.39 -0.02 2.17 16 30 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.04 1.26 8.10 -2.38 -0.02 1.24 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -80.87 318.31 4.20 -76.67 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.00 Total: 8.66 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.82 Total: -13.73 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -2.13 Total: -87.63 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.02 kcal Total: -80.87 4.20 -76.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.773 kcal (2) G-P(sol) polarization free energy of solvation -80.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds