Wall clock time and date at job start Mon Mar 30 2020 00:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 119.99970 * 2 1 4 4 C 1.50703 * 109.46928 * 269.99565 * 3 2 1 5 5 H 1.08003 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99913 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00252 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99851 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46641 * 120.00234 * 8 6 4 11 11 H 1.48497 * 109.47168 * 240.00488 * 8 6 4 12 12 C 1.34779 * 120.00292 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99998 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99838 * 359.97438 * 12 2 1 15 15 O 1.42895 * 109.46892 * 179.97438 * 14 12 2 16 16 C 1.35951 * 116.99758 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.03040 * 0.28885 * 16 15 14 18 18 C 1.38147 * 119.96935 * 180.25012 * 17 16 15 19 19 C 1.38455 * 120.02958 * 359.46222 * 18 17 16 20 20 F 1.35101 * 119.97206 * 180.29906 * 19 18 17 21 21 C 1.38452 * 120.06193 * 0.28172 * 19 18 17 22 22 C 1.38156 * 120.03063 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.47750 * 270.00262 * 1 2 3 24 24 H 1.09007 * 109.47463 * 30.00813 * 1 2 3 25 25 H 1.09002 * 109.46885 * 150.00288 * 1 2 3 26 26 H 1.09003 * 109.46917 * 29.99280 * 3 2 1 27 27 H 1.08998 * 109.47401 * 149.99544 * 3 2 1 28 28 H 0.96998 * 119.99815 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46403 * 60.00348 * 14 12 2 30 30 H 1.08995 * 109.47035 * 300.00415 * 14 12 2 31 31 H 1.07998 * 120.01328 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98838 * 179.74746 * 18 17 16 33 33 H 1.07997 * 119.98751 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.02057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6733 8 14 3.4380 3.4167 -3.4341 9 1 2.8610 2.4161 -4.3674 10 1 2.7999 4.7370 -3.6681 11 1 4.9006 3.5254 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0017 15 8 2.3140 -3.5584 0.0015 16 6 1.7944 -4.8147 0.0030 17 6 0.4194 -4.9972 -0.0014 18 6 -0.1072 -6.2743 0.0053 19 6 0.7368 -7.3718 0.0052 20 9 0.2205 -8.6203 0.0057 21 6 2.1095 -7.1912 0.0043 22 6 2.6389 -5.9151 0.0028 23 1 -0.3635 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1498 1.1385 0.5139 28 1 4.0294 4.4444 -0.8506 29 1 0.7585 -2.5306 -0.8881 30 1 0.7591 -2.5294 0.8919 31 1 -0.2391 -4.1412 -0.0065 32 1 -1.1778 -6.4167 0.0060 33 1 2.7667 -8.0481 0.0046 34 1 3.7097 -5.7743 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:52 Heat of formation + Delta-G solvation = -86.152688 kcal Electronic energy + Delta-G solvation = -19323.759122 eV Core-core repulsion = 15944.026182 eV Total energy + Delta-G solvation = -3379.732940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99056 -40.36811 -38.88405 -37.10641 -34.91282 -32.70573 -31.52202 -30.07880 -28.75597 -27.19627 -25.73869 -23.51580 -22.82851 -22.07252 -18.83033 -18.56524 -17.51541 -16.86542 -16.70353 -16.16844 -15.96877 -15.65690 -15.38006 -14.84073 -14.42783 -14.27058 -13.88256 -13.68472 -13.15850 -12.83140 -12.80389 -12.33742 -12.25777 -12.09087 -11.93732 -11.28029 -11.07174 -11.03287 -10.87528 -10.65232 -10.21032 -9.67937 -9.42428 -9.04906 -8.48835 -8.26546 -7.78876 -6.09636 -4.14855 0.92661 1.02151 2.79350 3.19333 3.27262 3.35328 3.36851 3.39547 3.98766 4.11828 4.40252 4.45282 4.54577 4.79592 4.90276 5.01874 5.10504 5.12397 5.25336 5.35586 5.49493 5.64834 5.78583 5.87643 5.94127 6.02969 6.07977 6.47321 6.89974 7.21497 7.34326 7.42815 7.86226 8.15578 8.23024 8.80156 8.94616 9.50545 10.98596 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.003451 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.406563 B = 8111.910225 C = 8273.507387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.517 6.517 14 C 0.040 3.960 15 O -0.283 6.283 16 C 0.129 3.871 17 C -0.186 4.186 18 C -0.111 4.111 19 C 0.050 3.950 20 F -0.144 7.144 21 C -0.112 4.112 22 C -0.123 4.123 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -17.577 2.445 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.392 6.392 14 C -0.038 4.038 15 O -0.194 6.194 16 C 0.082 3.918 17 C -0.205 4.205 18 C -0.130 4.130 19 C 0.031 3.969 20 F -0.123 7.123 21 C -0.130 4.130 22 C -0.141 4.141 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.683 -17.351 2.491 19.562 hybrid contribution -0.331 0.244 -0.990 1.072 sum -9.013 -17.108 1.502 19.395 Atomic orbital electron populations 1.21717 0.81223 1.02849 1.00723 1.48099 1.06280 1.07273 1.71574 1.19365 0.92654 0.77470 0.97759 1.21460 1.36779 1.06382 0.92209 0.92320 1.24942 0.95233 0.96344 0.97573 1.69939 1.38274 1.14315 1.30733 0.86419 0.78173 0.78295 0.84401 1.19782 1.20922 1.20787 1.19681 0.88173 0.84217 0.78922 1.90728 1.13419 1.86646 1.48421 1.22738 0.92166 0.85922 1.03025 1.86236 1.34418 1.11109 1.87672 1.19177 0.91824 0.85279 0.95495 1.21171 0.94078 0.98000 1.07211 1.20911 1.00277 0.91092 1.00692 1.17564 0.92021 0.79503 1.07818 1.91479 1.87428 1.38949 1.94459 1.20950 0.93353 0.97804 1.00935 1.20347 1.00699 0.89150 1.03941 0.93326 0.90213 0.92666 0.94585 0.93626 0.92669 0.89341 0.89461 0.84328 0.84513 0.84091 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.84 0.61 1.73 16 2 N -0.60 -12.16 2.86 -182.95 -0.52 -12.69 16 3 C 0.25 6.29 5.16 -5.19 -0.03 6.27 16 4 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.51 10.36 7.75 -10.98 -0.09 10.28 16 13 O -0.52 -13.28 16.08 -14.36 -0.23 -13.51 16 14 C 0.04 0.58 3.77 36.01 0.14 0.71 16 15 O -0.28 -4.51 9.67 -39.50 -0.38 -4.89 16 16 C 0.13 1.65 6.69 -39.23 -0.26 1.38 16 17 C -0.19 -1.93 9.04 -39.44 -0.36 -2.28 16 18 C -0.11 -1.07 10.02 -39.53 -0.40 -1.47 16 19 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 20 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 21 C -0.11 -1.11 10.02 -39.53 -0.40 -1.51 16 22 C -0.12 -1.40 9.99 -39.44 -0.39 -1.79 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.09 1.05 6.91 -51.93 -0.36 0.69 16 30 H 0.09 0.97 7.64 -51.93 -0.40 0.58 16 31 H 0.14 1.14 6.30 -52.49 -0.33 0.81 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -33.82 304.12 -6.55 -40.38 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.88 Total: -3.50 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.88 Total: 0.09 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.21 Total: -38.21 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.61 Total: -18.40 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.82 -6.55 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.774 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds