Wall clock time and date at job start Mon Mar 30 2020 00:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 119.99970 * 2 1 4 4 C 1.50703 * 109.46928 * 269.99565 * 3 2 1 5 5 H 1.08003 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99913 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00252 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99851 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46641 * 120.00234 * 8 6 4 11 11 H 1.48497 * 109.47168 * 240.00488 * 8 6 4 12 12 C 1.34779 * 120.00292 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99998 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99838 * 359.97438 * 12 2 1 15 15 O 1.42895 * 109.46892 * 179.97438 * 14 12 2 16 16 C 1.35951 * 116.99758 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.03040 * 0.28885 * 16 15 14 18 18 C 1.38147 * 119.96935 * 180.25012 * 17 16 15 19 19 C 1.38455 * 120.02958 * 359.46222 * 18 17 16 20 20 F 1.35101 * 119.97206 * 180.29906 * 19 18 17 21 21 C 1.38452 * 120.06193 * 0.28172 * 19 18 17 22 22 C 1.38156 * 120.03063 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.47750 * 270.00262 * 1 2 3 24 24 H 1.09007 * 109.47463 * 30.00813 * 1 2 3 25 25 H 1.09002 * 109.46885 * 150.00288 * 1 2 3 26 26 H 1.09003 * 109.46917 * 29.99280 * 3 2 1 27 27 H 1.08998 * 109.47401 * 149.99544 * 3 2 1 28 28 H 0.96998 * 119.99815 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46403 * 60.00348 * 14 12 2 30 30 H 1.08995 * 109.47035 * 300.00415 * 14 12 2 31 31 H 1.07998 * 120.01328 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98838 * 179.74746 * 18 17 16 33 33 H 1.07997 * 119.98751 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.02057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6733 8 14 3.4380 3.4167 -3.4341 9 1 2.8610 2.4161 -4.3674 10 1 2.7999 4.7370 -3.6681 11 1 4.9006 3.5254 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0017 15 8 2.3140 -3.5584 0.0015 16 6 1.7944 -4.8147 0.0030 17 6 0.4194 -4.9972 -0.0014 18 6 -0.1072 -6.2743 0.0053 19 6 0.7368 -7.3718 0.0052 20 9 0.2205 -8.6203 0.0057 21 6 2.1095 -7.1912 0.0043 22 6 2.6389 -5.9151 0.0028 23 1 -0.3635 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1498 1.1385 0.5139 28 1 4.0294 4.4444 -0.8506 29 1 0.7585 -2.5306 -0.8881 30 1 0.7591 -2.5294 0.8919 31 1 -0.2391 -4.1412 -0.0065 32 1 -1.1778 -6.4167 0.0060 33 1 2.7667 -8.0481 0.0046 34 1 3.7097 -5.7743 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:52 Heat of formation + Delta-G solvation = -107.587527 kcal Electronic energy + Delta-G solvation = -19324.688606 eV Core-core repulsion = 15944.026182 eV Total energy + Delta-G solvation = -3380.662425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80556 -41.43382 -40.29195 -38.11305 -36.62441 -34.76761 -32.32461 -31.23076 -30.12933 -28.59466 -27.24669 -24.96370 -23.97411 -23.10190 -20.31608 -19.50827 -18.72842 -18.38427 -18.02113 -17.40015 -17.27052 -16.95499 -16.51539 -16.19587 -15.70689 -15.59726 -14.98951 -14.57873 -14.35376 -14.11700 -13.97539 -13.79955 -13.48788 -13.32392 -13.28249 -13.10728 -12.80723 -12.55233 -12.22609 -11.94756 -11.87280 -11.68156 -10.68728 -10.66050 -10.18220 -9.49370 -9.13999 -8.24130 -6.38884 0.16459 0.19235 1.36534 1.39328 1.50229 1.62799 1.69322 2.36890 2.56479 2.69808 3.06158 3.32568 3.49767 3.75975 3.81478 3.95715 4.09430 4.18265 4.33559 4.42584 4.57176 4.73335 4.91407 4.95408 4.99865 5.11242 5.14231 5.20544 5.22899 5.52071 5.68702 5.79388 6.03241 6.28576 6.64936 6.71845 7.24183 7.38657 8.83411 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.003451 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.406563 B = 8111.910225 C = 8273.507387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.493 3.507 13 O -0.587 6.587 14 C 0.054 3.946 15 O -0.319 6.319 16 C 0.104 3.896 17 C -0.179 4.179 18 C -0.107 4.107 19 C 0.041 3.959 20 F -0.148 7.148 21 C -0.109 4.109 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.031 0.969 27 H -0.003 1.003 28 H 0.268 0.732 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -18.877 1.543 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.280 3.720 13 O -0.467 6.467 14 C -0.023 4.023 15 O -0.232 6.232 16 C 0.059 3.941 17 C -0.197 4.197 18 C -0.125 4.125 19 C 0.021 3.979 20 F -0.126 7.126 21 C -0.128 4.128 22 C -0.155 4.155 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.049 0.951 27 H 0.015 0.985 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.360 -18.675 1.595 21.917 hybrid contribution 0.454 0.568 -0.654 0.977 sum -10.906 -18.107 0.941 21.159 Atomic orbital electron populations 1.22099 0.77091 1.04661 1.03281 1.48091 1.08799 1.05681 1.71022 1.18820 0.91245 0.80042 0.96173 1.21752 1.36953 1.06560 0.93071 0.92637 1.25870 0.94864 0.96465 1.02018 1.70053 1.38917 1.14823 1.33012 0.85353 0.77829 0.78464 0.79071 1.19029 1.19286 1.20933 1.20824 0.87823 0.86210 0.77101 1.90686 1.16686 1.87872 1.51451 1.22672 0.90990 0.82225 1.06447 1.86176 1.35942 1.12452 1.88656 1.19417 0.93246 0.84081 0.97354 1.21421 0.93125 0.99236 1.05963 1.21216 1.01586 0.90390 0.99320 1.17805 0.92411 0.79739 1.07897 1.91475 1.87442 1.39237 1.94495 1.21121 0.93765 0.97807 1.00113 1.20480 1.00840 0.89666 1.04560 0.90328 0.91070 0.88234 0.95072 0.98486 0.92352 0.85947 0.85360 0.81601 0.81831 0.82218 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 10.24 127.77 1.31 3.09 16 2 N -0.60 -24.36 2.86 -851.11 -2.43 -26.79 16 3 C 0.26 13.71 5.16 85.63 0.44 14.15 16 4 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.39 5.46 84.65 0.46 0.86 16 7 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 8 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.49 20.20 7.75 87.66 0.68 20.88 16 13 O -0.59 -31.60 16.08 16.00 0.26 -31.35 16 14 C 0.05 1.42 3.77 71.24 0.27 1.68 16 15 O -0.32 -9.89 9.67 -73.96 -0.72 -10.60 16 16 C 0.10 2.49 6.69 22.50 0.15 2.64 16 17 C -0.18 -3.06 9.04 22.36 0.20 -2.86 16 18 C -0.11 -1.67 10.02 22.30 0.22 -1.45 16 19 C 0.04 0.76 7.30 22.37 0.16 0.92 16 20 F -0.15 -2.90 17.27 44.97 0.78 -2.12 16 21 C -0.11 -2.01 10.02 22.30 0.22 -1.78 16 22 C -0.14 -3.02 9.99 22.36 0.22 -2.79 16 23 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.95 8.07 -2.38 -0.02 1.93 16 25 H 0.10 1.65 6.44 -2.39 -0.02 1.64 16 26 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 27 H 0.00 -0.19 7.42 -2.39 -0.02 -0.20 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.12 2.35 6.91 -2.38 -0.02 2.33 16 30 H 0.13 2.28 7.64 -2.39 -0.02 2.26 16 31 H 0.17 1.82 6.30 -2.91 -0.02 1.80 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -78.47 304.12 5.90 -72.58 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.11 Total: 2.76 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.59 Total: 4.50 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.15 Total: -82.39 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.46 Total: -41.95 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.47 5.90 -72.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.011 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds