Wall clock time and date at job start Mon Mar 30 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99840 * 2 1 4 4 C 1.50700 * 109.46946 * 269.99575 * 3 2 1 5 5 H 1.07996 * 120.00157 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00159 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99920 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46981 * 60.00188 * 8 6 4 10 10 H 1.48497 * 109.47097 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46967 * 300.00078 * 8 6 4 12 12 C 1.34775 * 120.00067 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00113 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00139 * 0.02562 * 12 2 1 15 15 O 1.42893 * 109.47156 * 179.97438 * 14 12 2 16 16 C 1.35956 * 117.00026 * 179.97438 * 15 14 12 17 17 C 1.38657 * 120.06128 * 359.97438 * 16 15 14 18 18 C 1.38184 * 119.96964 * 180.02562 * 17 16 15 19 19 C 1.38265 * 120.09281 * 359.97438 * 18 17 16 20 20 C 1.38248 * 120.12705 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.03366 * 359.97438 * 20 19 18 22 22 F 1.35103 * 120.05240 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47193 * 269.99924 * 1 2 3 24 24 H 1.08996 * 109.46812 * 30.00218 * 1 2 3 25 25 H 1.09005 * 109.46883 * 149.99821 * 1 2 3 26 26 H 1.08994 * 109.47150 * 29.99765 * 3 2 1 27 27 H 1.08998 * 109.46995 * 149.99818 * 3 2 1 28 28 H 0.97003 * 119.99601 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.46839 * 59.99224 * 14 12 2 30 30 H 1.09001 * 109.46752 * 299.99815 * 14 12 2 31 31 H 1.08004 * 120.01774 * 0.03769 * 17 16 15 32 32 H 1.08000 * 119.95526 * 180.27319 * 18 17 16 33 33 H 1.08001 * 119.93128 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.98480 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.1399 3.5954 -4.1333 10 1 4.1803 4.7030 -3.4339 11 1 4.2395 2.3819 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4724 0.0005 15 8 2.3140 -3.5584 0.0005 16 6 1.7944 -4.8148 0.0011 17 6 0.4200 -4.9980 0.0021 18 6 -0.1061 -6.2758 0.0032 19 6 0.7362 -7.3723 0.0027 20 6 2.1072 -7.1941 0.0016 21 6 2.6395 -5.9173 0.0006 22 9 3.9792 -5.7428 -0.0010 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8504 29 1 0.7591 -2.5302 -0.8896 30 1 0.7585 -2.5299 0.8903 31 1 -0.2391 -4.1424 0.0019 32 1 -1.1766 -6.4182 -0.0004 33 1 0.3222 -8.3698 0.0040 34 1 2.7629 -8.0522 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:58 Heat of formation + Delta-G solvation = -83.811601 kcal Electronic energy + Delta-G solvation = -19607.711371 eV Core-core repulsion = 16228.079948 eV Total energy + Delta-G solvation = -3379.631423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.75662 -40.26968 -38.86078 -37.29753 -34.89111 -32.68284 -30.90937 -30.46603 -28.86722 -27.21256 -25.72678 -23.38977 -22.67799 -22.19950 -18.80948 -18.60801 -17.15453 -16.79470 -16.70921 -16.28342 -15.97618 -15.45631 -15.33203 -14.96578 -14.54529 -14.30547 -14.10237 -13.48477 -12.91557 -12.73094 -12.53654 -12.27603 -12.13402 -11.99118 -11.80888 -11.36110 -11.21975 -11.18218 -10.91493 -10.60167 -10.18829 -9.69396 -9.15900 -9.02143 -8.45904 -8.33575 -7.76647 -6.07155 -4.12489 0.91569 1.07063 2.74698 3.21925 3.31148 3.35864 3.38019 3.40052 3.94173 4.16092 4.42402 4.51982 4.59704 4.83236 4.96861 5.00604 5.06690 5.11608 5.27318 5.29246 5.50764 5.76331 5.80088 5.83735 5.95850 6.09250 6.14495 6.43907 6.91986 7.19358 7.36937 7.44703 7.88414 8.17986 8.25285 8.82599 8.96888 9.52680 11.01030 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003984 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.123297 B = 7025.894742 C = 7359.246108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.247 3.753 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.505 3.495 13 O -0.514 6.514 14 C 0.041 3.959 15 O -0.279 6.279 16 C 0.103 3.897 17 C -0.187 4.187 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.117 4.117 21 C 0.069 3.931 22 F -0.129 7.129 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 -18.971 2.442 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.289 3.711 13 O -0.389 6.389 14 C -0.038 4.038 15 O -0.190 6.190 16 C 0.056 3.944 17 C -0.206 4.206 18 C -0.108 4.108 19 C -0.154 4.154 20 C -0.136 4.136 21 C 0.049 3.951 22 F -0.107 7.107 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.436 -18.677 2.492 21.540 hybrid contribution 0.031 0.486 -1.004 1.116 sum -10.404 -18.192 1.489 21.009 Atomic orbital electron populations 1.21713 0.81242 1.02823 1.00700 1.48095 1.06257 1.07224 1.71677 1.19351 0.92652 0.77437 0.97721 1.21385 1.36959 1.06446 0.92183 0.92435 1.24935 0.95203 0.96320 0.97566 1.69921 1.38119 1.14384 1.30860 0.86533 0.78387 0.77869 0.84503 1.20220 1.21104 1.20104 1.19667 0.88190 0.84192 0.79010 1.90740 1.13408 1.86593 1.48202 1.22758 0.92129 0.85850 1.03034 1.86280 1.34255 1.10781 1.87727 1.19194 0.92186 0.84842 0.98184 1.21227 0.92788 0.99305 1.07271 1.21006 1.00244 0.91546 0.97985 1.20899 0.92221 0.99404 1.02886 1.21022 0.96513 0.94740 1.01329 1.17051 0.77296 0.91953 1.08754 1.91539 1.28987 1.96126 1.94092 0.93344 0.90211 0.92695 0.94583 0.93642 0.92563 0.89284 0.89409 0.84373 0.85065 0.84970 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.24 59.85 0.61 1.77 16 2 N -0.60 -12.49 2.86 -182.95 -0.52 -13.01 16 3 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.51 10.79 7.75 -10.98 -0.09 10.71 16 13 O -0.51 -13.81 16.08 -14.35 -0.23 -14.04 16 14 C 0.04 0.63 3.77 36.01 0.14 0.76 16 15 O -0.28 -4.95 9.53 -39.51 -0.38 -5.32 16 16 C 0.10 1.47 6.69 -39.18 -0.26 1.21 16 17 C -0.19 -1.96 9.04 -39.45 -0.36 -2.32 16 18 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 19 C -0.14 -1.11 10.04 -39.57 -0.40 -1.50 16 20 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 21 C 0.07 0.96 7.31 -39.30 -0.29 0.68 16 22 F -0.13 -2.11 17.11 2.25 0.04 -2.07 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 25 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 26 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 27 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.11 6.92 -51.93 -0.36 0.75 16 30 H 0.09 1.04 7.63 -51.93 -0.40 0.64 16 31 H 0.14 1.15 6.30 -52.48 -0.33 0.82 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -35.47 303.93 -6.56 -42.03 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -3.88 Total: -4.46 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.88 Total: 1.27 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.21 Total: -38.89 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.61 Total: -19.37 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.47 -6.56 -42.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.782 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds