Wall clock time and date at job start Mon Mar 30 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99840 * 2 1 4 4 C 1.50700 * 109.46946 * 269.99575 * 3 2 1 5 5 H 1.07996 * 120.00157 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00159 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99920 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46981 * 60.00188 * 8 6 4 10 10 H 1.48497 * 109.47097 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46967 * 300.00078 * 8 6 4 12 12 C 1.34775 * 120.00067 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00113 * 180.02562 * 12 2 1 14 14 C 1.50706 * 120.00139 * 0.02562 * 12 2 1 15 15 O 1.42893 * 109.47156 * 179.97438 * 14 12 2 16 16 C 1.35956 * 117.00026 * 179.97438 * 15 14 12 17 17 C 1.38657 * 120.06128 * 359.97438 * 16 15 14 18 18 C 1.38184 * 119.96964 * 180.02562 * 17 16 15 19 19 C 1.38265 * 120.09281 * 359.97438 * 18 17 16 20 20 C 1.38248 * 120.12705 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.03366 * 359.97438 * 20 19 18 22 22 F 1.35103 * 120.05240 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47193 * 269.99924 * 1 2 3 24 24 H 1.08996 * 109.46812 * 30.00218 * 1 2 3 25 25 H 1.09005 * 109.46883 * 149.99821 * 1 2 3 26 26 H 1.08994 * 109.47150 * 29.99765 * 3 2 1 27 27 H 1.08998 * 109.46995 * 149.99818 * 3 2 1 28 28 H 0.97003 * 119.99601 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.46839 * 59.99224 * 14 12 2 30 30 H 1.09001 * 109.46752 * 299.99815 * 14 12 2 31 31 H 1.08004 * 120.01774 * 0.03769 * 17 16 15 32 32 H 1.08000 * 119.95526 * 180.27319 * 18 17 16 33 33 H 1.08001 * 119.93128 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.98480 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.1399 3.5954 -4.1333 10 1 4.1803 4.7030 -3.4339 11 1 4.2395 2.3819 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4724 0.0005 15 8 2.3140 -3.5584 0.0005 16 6 1.7944 -4.8148 0.0011 17 6 0.4200 -4.9980 0.0021 18 6 -0.1061 -6.2758 0.0032 19 6 0.7362 -7.3723 0.0027 20 6 2.1072 -7.1941 0.0016 21 6 2.6395 -5.9173 0.0006 22 9 3.9792 -5.7428 -0.0010 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5139 28 1 4.0317 4.4431 -0.8504 29 1 0.7591 -2.5302 -0.8896 30 1 0.7585 -2.5299 0.8903 31 1 -0.2391 -4.1424 0.0019 32 1 -1.1766 -6.4182 -0.0004 33 1 0.3222 -8.3698 0.0040 34 1 2.7629 -8.0522 0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:58 Heat of formation + Delta-G solvation = -107.701182 kcal Electronic energy + Delta-G solvation = -19608.747301 eV Core-core repulsion = 16228.079948 eV Total energy + Delta-G solvation = -3380.667353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.83317 -41.40633 -40.27379 -38.31331 -36.66732 -34.78862 -31.71908 -31.51059 -30.34035 -28.68037 -27.27453 -24.99440 -23.63811 -23.31855 -20.33120 -19.64116 -18.74655 -18.15069 -17.95442 -17.57007 -17.31633 -17.01733 -16.57043 -16.25262 -15.75631 -15.55538 -15.33640 -14.79624 -14.32887 -14.02782 -13.81854 -13.65533 -13.50978 -13.27451 -13.16002 -12.82536 -12.64289 -12.56801 -12.22504 -12.16021 -12.11030 -11.75272 -10.73538 -10.66786 -9.92521 -9.52616 -9.23982 -8.25495 -6.40634 0.14893 0.27598 1.35039 1.40208 1.46517 1.56502 1.64284 2.35420 2.62530 2.63366 3.04580 3.28001 3.46135 3.80812 3.86698 4.01730 4.04235 4.30596 4.36449 4.40117 4.52940 4.71480 4.92797 4.97325 5.01501 5.11790 5.18041 5.28629 5.44416 5.49516 5.69299 5.78165 6.01354 6.23650 6.61343 6.69007 7.21526 7.35858 8.81824 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003984 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.123297 B = 7025.894742 C = 7359.246108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.259 3.741 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.256 1.256 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.491 3.509 13 O -0.589 6.589 14 C 0.056 3.944 15 O -0.326 6.326 16 C 0.069 3.931 17 C -0.184 4.184 18 C -0.079 4.079 19 C -0.124 4.124 20 C -0.116 4.116 21 C 0.023 3.977 22 F -0.159 7.159 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.033 0.967 27 H -0.005 1.005 28 H 0.268 0.732 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 -21.034 1.498 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.138 3.862 4 C -0.587 4.587 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.180 1.180 10 H -0.202 1.202 11 H -0.207 1.207 12 C 0.279 3.721 13 O -0.470 6.470 14 C -0.021 4.021 15 O -0.240 6.240 16 C 0.023 3.977 17 C -0.202 4.202 18 C -0.096 4.096 19 C -0.141 4.141 20 C -0.135 4.135 21 C 0.003 3.997 22 F -0.138 7.138 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.189 0.811 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.344 -20.761 1.554 25.282 hybrid contribution 1.131 1.006 -0.651 1.648 sum -13.212 -19.755 0.903 23.784 Atomic orbital electron populations 1.22113 0.76920 1.04727 1.03352 1.48090 1.08876 1.05539 1.70928 1.18817 0.91195 0.79999 0.96211 1.21694 1.37261 1.06685 0.93028 0.92666 1.25882 0.94760 0.96400 1.02138 1.70043 1.38710 1.14844 1.33172 0.85453 0.79002 0.77287 0.78990 1.18007 1.20236 1.20664 1.20843 0.87807 0.86302 0.77177 1.90695 1.16884 1.87889 1.51490 1.22689 0.90856 0.82013 1.06531 1.86195 1.36290 1.12518 1.88990 1.19542 0.94029 0.83256 1.00856 1.21584 0.91072 1.01454 1.06109 1.21547 1.02319 0.90396 0.95373 1.21431 0.91070 1.01438 1.00194 1.21349 0.98083 0.93620 1.00415 1.17731 0.76370 0.93851 1.11728 1.91449 1.31202 1.96423 1.94691 0.90242 0.90920 0.88215 0.94881 0.98720 0.92299 0.85766 0.85189 0.81810 0.80979 0.81145 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 10.24 127.77 1.31 3.16 16 2 N -0.60 -25.28 2.86 -851.13 -2.43 -27.71 16 3 C 0.26 14.13 5.16 85.63 0.44 14.57 16 4 C -0.55 -32.01 9.39 25.60 0.24 -31.77 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 C 0.49 21.45 7.75 87.66 0.68 22.13 16 13 O -0.59 -33.84 16.08 16.01 0.26 -33.58 16 14 C 0.06 1.63 3.77 71.24 0.27 1.90 16 15 O -0.33 -11.79 9.53 -74.02 -0.71 -12.49 16 16 C 0.07 1.92 6.69 22.53 0.15 2.07 16 17 C -0.18 -3.16 9.04 22.36 0.20 -2.95 16 18 C -0.08 -0.89 10.04 22.26 0.22 -0.67 16 19 C -0.12 -1.46 10.04 22.28 0.22 -1.23 16 20 C -0.12 -2.13 10.02 22.29 0.22 -1.91 16 21 C 0.02 0.64 7.31 22.45 0.16 0.81 16 22 F -0.16 -5.62 17.11 44.97 0.77 -4.85 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 25 H 0.10 1.74 6.44 -2.38 -0.02 1.73 16 26 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 27 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.12 2.64 6.92 -2.39 -0.02 2.63 16 30 H 0.13 2.58 7.63 -2.39 -0.02 2.57 16 31 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 32 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -86.50 303.93 5.90 -80.59 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.11 Total: 0.20 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.59 Total: 6.99 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.15 Total: -84.30 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.45 Total: -46.08 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.77 Total: -4.85 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -86.50 5.90 -80.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.109 kcal (2) G-P(sol) polarization free energy of solvation -86.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds