Wall clock time and date at job start Mon Mar 30 2020 00:54:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46504 * 119.99840 * 2 1
4 4 C 1.50700 * 109.46946 * 269.99575 * 3 2 1
5 5 H 1.07996 * 120.00157 * 0.02562 * 4 3 2
6 6 C 1.37875 * 119.99673 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00159 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 119.99920 * 180.02562 * 6 4 3
9 9 H 1.48504 * 109.46981 * 60.00188 * 8 6 4
10 10 H 1.48497 * 109.47097 * 179.97438 * 8 6 4
11 11 H 1.48493 * 109.46967 * 300.00078 * 8 6 4
12 12 C 1.34775 * 120.00067 * 179.97438 * 2 1 3
13 13 O 1.21279 * 120.00113 * 180.02562 * 12 2 1
14 14 C 1.50706 * 120.00139 * 0.02562 * 12 2 1
15 15 O 1.42893 * 109.47156 * 179.97438 * 14 12 2
16 16 C 1.35956 * 117.00026 * 179.97438 * 15 14 12
17 17 C 1.38657 * 120.06128 * 359.97438 * 16 15 14
18 18 C 1.38184 * 119.96964 * 180.02562 * 17 16 15
19 19 C 1.38265 * 120.09281 * 359.97438 * 18 17 16
20 20 C 1.38248 * 120.12705 * 0.02562 * 19 18 17
21 21 C 1.38332 * 120.03366 * 359.97438 * 20 19 18
22 22 F 1.35103 * 120.05240 * 180.02562 * 21 20 19
23 23 H 1.08995 * 109.47193 * 269.99924 * 1 2 3
24 24 H 1.08996 * 109.46812 * 30.00218 * 1 2 3
25 25 H 1.09005 * 109.46883 * 149.99821 * 1 2 3
26 26 H 1.08994 * 109.47150 * 29.99765 * 3 2 1
27 27 H 1.08998 * 109.46995 * 149.99818 * 3 2 1
28 28 H 0.97003 * 119.99601 * 179.97438 * 7 6 4
29 29 H 1.08994 * 109.46839 * 59.99224 * 14 12 2
30 30 H 1.09001 * 109.46752 * 299.99815 * 14 12 2
31 31 H 1.08004 * 120.01774 * 0.03769 * 17 16 15
32 32 H 1.08000 * 119.95526 * 180.27319 * 18 17 16
33 33 H 1.08001 * 119.93128 * 179.97438 * 19 18 17
34 34 H 1.07998 * 119.98480 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4487 1.7037 -1.4208
5 1 2.0975 1.0961 -2.2417
6 6 3.1269 2.8774 -1.6727
7 7 3.5542 3.6176 -0.6731
8 14 3.4378 3.4170 -3.4339
9 1 2.1399 3.5954 -4.1333
10 1 4.1803 4.7030 -3.4339
11 1 4.2395 2.3819 -4.1345
12 6 2.1389 -1.1672 0.0005
13 8 3.3517 -1.1672 0.0010
14 6 1.3854 -2.4724 0.0005
15 8 2.3140 -3.5584 0.0005
16 6 1.7944 -4.8148 0.0011
17 6 0.4200 -4.9980 0.0021
18 6 -0.1061 -6.2758 0.0032
19 6 0.7362 -7.3723 0.0027
20 6 2.1072 -7.1941 0.0016
21 6 2.6395 -5.9173 0.0006
22 9 3.9792 -5.7428 -0.0010
23 1 -0.3633 0.0000 1.0276
24 1 -0.3633 0.8899 -0.5139
25 1 -0.3633 -0.8900 -0.5139
26 1 1.6084 2.0284 0.5138
27 1 3.1499 1.1385 0.5139
28 1 4.0317 4.4431 -0.8504
29 1 0.7591 -2.5302 -0.8896
30 1 0.7585 -2.5299 0.8903
31 1 -0.2391 -4.1424 0.0019
32 1 -1.1766 -6.4182 -0.0004
33 1 0.3222 -8.3698 0.0040
34 1 2.7629 -8.0522 0.0008
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000034651704.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:58
Heat of formation + Delta-G solvation = -107.701182 kcal
Electronic energy + Delta-G solvation = -19608.747301 eV
Core-core repulsion = 16228.079948 eV
Total energy + Delta-G solvation = -3380.667353 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-49.83317 -41.40633 -40.27379 -38.31331 -36.66732 -34.78862 -31.71908 -31.51059
-30.34035 -28.68037 -27.27453 -24.99440 -23.63811 -23.31855 -20.33120 -19.64116
-18.74655 -18.15069 -17.95442 -17.57007 -17.31633 -17.01733 -16.57043 -16.25262
-15.75631 -15.55538 -15.33640 -14.79624 -14.32887 -14.02782 -13.81854 -13.65533
-13.50978 -13.27451 -13.16002 -12.82536 -12.64289 -12.56801 -12.22504 -12.16021
-12.11030 -11.75272 -10.73538 -10.66786 -9.92521 -9.52616 -9.23982 -8.25495
-6.40634 0.14893 0.27598 1.35039 1.40208 1.46517 1.56502 1.64284
2.35420 2.62530 2.63366 3.04580 3.28001 3.46135 3.80812 3.86698
4.01730 4.04235 4.30596 4.36449 4.40117 4.52940 4.71480 4.92797
4.97325 5.01501 5.11790 5.18041 5.28629 5.44416 5.49516 5.69299
5.78165 6.01354 6.23650 6.61343 6.69007 7.21526 7.35858 8.81824
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.030962 B = 0.003984 C = 0.003804
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 904.123297 B = 7025.894742 C = 7359.246108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.602 5.602
3 C 0.259 3.741
4 C -0.548 4.548
5 H 0.055 0.945
6 C 0.007 3.993
7 N -0.928 5.928
8 Si 0.969 3.031
9 H -0.256 1.256
10 H -0.277 1.277
11 H -0.281 1.281
12 C 0.491 3.509
13 O -0.589 6.589
14 C 0.056 3.944
15 O -0.326 6.326
16 C 0.069 3.931
17 C -0.184 4.184
18 C -0.079 4.079
19 C -0.124 4.124
20 C -0.116 4.116
21 C 0.023 3.977
22 F -0.159 7.159
23 H 0.079 0.921
24 H 0.072 0.928
25 H 0.099 0.901
26 H 0.033 0.967
27 H -0.005 1.005
28 H 0.268 0.732
29 H 0.125 0.875
30 H 0.131 0.869
31 H 0.164 0.836
32 H 0.173 0.827
33 H 0.171 0.829
34 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.285 -21.034 1.498 26.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.334 5.334
3 C 0.138 3.862
4 C -0.587 4.587
5 H 0.073 0.927
6 C -0.192 4.192
7 N -0.568 5.568
8 Si 0.793 3.207
9 H -0.180 1.180
10 H -0.202 1.202
11 H -0.207 1.207
12 C 0.279 3.721
13 O -0.470 6.470
14 C -0.021 4.021
15 O -0.240 6.240
16 C 0.023 3.977
17 C -0.202 4.202
18 C -0.096 4.096
19 C -0.141 4.141
20 C -0.135 4.135
21 C 0.003 3.997
22 F -0.138 7.138
23 H 0.098 0.902
24 H 0.091 0.909
25 H 0.118 0.882
26 H 0.051 0.949
27 H 0.013 0.987
28 H 0.077 0.923
29 H 0.142 0.858
30 H 0.148 0.852
31 H 0.182 0.818
32 H 0.190 0.810
33 H 0.189 0.811
34 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -14.344 -20.761 1.554 25.282
hybrid contribution 1.131 1.006 -0.651 1.648
sum -13.212 -19.755 0.903 23.784
Atomic orbital electron populations
1.22113 0.76920 1.04727 1.03352 1.48090 1.08876 1.05539 1.70928
1.18817 0.91195 0.79999 0.96211 1.21694 1.37261 1.06685 0.93028
0.92666 1.25882 0.94760 0.96400 1.02138 1.70043 1.38710 1.14844
1.33172 0.85453 0.79002 0.77287 0.78990 1.18007 1.20236 1.20664
1.20843 0.87807 0.86302 0.77177 1.90695 1.16884 1.87889 1.51490
1.22689 0.90856 0.82013 1.06531 1.86195 1.36290 1.12518 1.88990
1.19542 0.94029 0.83256 1.00856 1.21584 0.91072 1.01454 1.06109
1.21547 1.02319 0.90396 0.95373 1.21431 0.91070 1.01438 1.00194
1.21349 0.98083 0.93620 1.00415 1.17731 0.76370 0.93851 1.11728
1.91449 1.31202 1.96423 1.94691 0.90242 0.90920 0.88215 0.94881
0.98720 0.92299 0.85766 0.85189 0.81810 0.80979 0.81145 0.82393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.85 10.24 127.77 1.31 3.16 16
2 N -0.60 -25.28 2.86 -851.13 -2.43 -27.71 16
3 C 0.26 14.13 5.16 85.63 0.44 14.57 16
4 C -0.55 -32.01 9.39 25.60 0.24 -31.77 16
5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16
6 C 0.01 0.43 5.46 84.65 0.46 0.89 16
7 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16
8 Si 0.97 45.41 29.54 68.60 2.03 47.44 16
9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16
10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16
12 C 0.49 21.45 7.75 87.66 0.68 22.13 16
13 O -0.59 -33.84 16.08 16.01 0.26 -33.58 16
14 C 0.06 1.63 3.77 71.24 0.27 1.90 16
15 O -0.33 -11.79 9.53 -74.02 -0.71 -12.49 16
16 C 0.07 1.92 6.69 22.53 0.15 2.07 16
17 C -0.18 -3.16 9.04 22.36 0.20 -2.95 16
18 C -0.08 -0.89 10.04 22.26 0.22 -0.67 16
19 C -0.12 -1.46 10.04 22.28 0.22 -1.23 16
20 C -0.12 -2.13 10.02 22.29 0.22 -1.91 16
21 C 0.02 0.64 7.31 22.45 0.16 0.81 16
22 F -0.16 -5.62 17.11 44.97 0.77 -4.85 16
23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16
25 H 0.10 1.74 6.44 -2.38 -0.02 1.73 16
26 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16
27 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16
28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16
29 H 0.12 2.64 6.92 -2.39 -0.02 2.63 16
30 H 0.13 2.58 7.63 -2.39 -0.02 2.57 16
31 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16
32 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16
33 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16
34 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16
Total: -1.00 -86.50 303.93 5.90 -80.59
By element:
Atomic # 1 Polarization: -0.92 SS G_CDS: 1.11 Total: 0.20 kcal
Atomic # 6 Polarization: 2.41 SS G_CDS: 4.59 Total: 6.99 kcal
Atomic # 7 Polarization: -82.15 SS G_CDS: -2.15 Total: -84.30 kcal
Atomic # 8 Polarization: -45.63 SS G_CDS: -0.45 Total: -46.08 kcal
Atomic # 9 Polarization: -5.62 SS G_CDS: 0.77 Total: -4.85 kcal
Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal
Total: -86.50 5.90 -80.59 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034651704.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.109 kcal
(2) G-P(sol) polarization free energy of solvation -86.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.593 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds