Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46807 * 2 1 4 4 C 1.37100 * 120.00402 * 264.76721 * 3 2 1 5 5 H 1.07997 * 120.00018 * 138.85440 * 4 3 2 6 6 C 1.38955 * 119.99651 * 318.85669 * 4 3 2 7 7 N 1.31408 * 120.00271 * 341.82467 * 6 4 3 8 8 Si 1.86797 * 119.99519 * 161.82234 * 6 4 3 9 9 H 1.48502 * 109.47552 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47221 * 120.00169 * 8 6 4 11 11 H 1.48506 * 109.47111 * 239.99990 * 8 6 4 12 12 C 1.34781 * 119.99898 * 84.77650 * 3 2 1 13 13 O 1.21291 * 119.99824 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99927 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47446 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.47376 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47223 * 180.02562 * 16 15 14 18 18 C 1.33383 * 125.20493 * 89.99550 * 17 16 15 19 19 C 1.38423 * 114.92186 * 179.97438 * 18 17 16 20 20 C 1.33389 * 114.92154 * 0.02562 * 19 18 17 21 21 S 1.75881 * 109.59246 * 359.75893 * 20 19 18 22 22 H 1.08998 * 109.47048 * 299.99866 * 1 2 3 23 23 H 1.09001 * 109.46877 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47048 * 240.00134 * 2 1 3 26 26 H 1.09003 * 109.47303 * 120.00128 * 2 1 3 27 27 H 0.96999 * 119.99718 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46848 * 60.00799 * 14 12 3 29 29 H 1.08997 * 109.47637 * 300.00946 * 14 12 3 30 30 H 1.08998 * 109.46787 * 59.99965 * 15 14 12 31 31 H 1.09003 * 109.46705 * 300.00617 * 15 14 12 32 32 H 1.08998 * 109.47357 * 60.00111 * 16 15 14 33 33 H 1.09002 * 109.47031 * 299.99788 * 16 15 14 34 34 H 1.07994 * 122.54101 * 359.96320 * 18 17 16 35 35 H 1.08007 * 122.53919 * 180.02562 * 19 18 17 36 36 H 1.08005 * 125.20023 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0219 -1.3534 6 6 3.0372 1.2843 -2.1605 7 7 3.6792 0.1819 -1.8451 8 14 3.0498 1.9006 -3.9238 9 1 2.2583 3.1537 -4.0160 10 1 4.4487 2.1672 -4.3451 11 1 2.4530 0.8711 -4.8123 12 6 2.1427 2.0520 1.1624 13 8 2.5465 3.1957 1.1623 14 6 1.7790 1.3814 2.4620 15 6 2.0100 2.3541 3.6201 16 6 1.6413 1.6730 4.9395 17 6 1.8683 2.6314 6.0802 18 6 0.9606 3.4814 6.5625 19 6 1.3976 4.2653 7.6164 20 6 2.6604 4.0523 7.9895 21 16 3.3686 2.7955 6.9834 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.1593 -0.3119 -2.5281 28 1 2.4006 0.4967 2.6007 29 1 0.7295 1.0879 2.4382 30 1 1.3882 3.2385 3.4812 31 1 3.0594 2.6479 3.6439 32 1 2.2634 0.7888 5.0782 33 1 0.5920 1.3790 4.9159 34 1 -0.0394 3.5528 6.1612 35 1 0.7641 4.9943 8.0999 36 1 3.1687 4.5692 8.7901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = -16.114808 kcal Electronic energy + Delta-G solvation = -17690.404240 eV Core-core repulsion = 14879.921546 eV Total energy + Delta-G solvation = -2810.482694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.64798 -37.90449 -35.12934 -34.20848 -32.02824 -30.08551 -29.37871 -26.79162 -24.83382 -23.30975 -22.23898 -21.30455 -19.23218 -18.64610 -17.08996 -16.67755 -15.75023 -15.49897 -15.21223 -14.66889 -14.14940 -13.62315 -13.38661 -13.03177 -12.89516 -12.75191 -12.38120 -12.31906 -11.78613 -11.77948 -11.44867 -11.17292 -11.11634 -10.98970 -10.79728 -10.70492 -10.45678 -10.29187 -10.18779 -10.01446 -8.88769 -8.61067 -8.46659 -8.30404 -7.36691 -6.27838 -3.95940 1.01716 1.65095 2.02391 2.75503 3.18426 3.28468 3.34859 4.00218 4.19986 4.72196 4.96654 5.03042 5.06966 5.20486 5.42686 5.47999 5.55771 5.73709 5.81519 5.88709 5.92775 6.01788 6.11317 6.18441 6.24552 6.29943 6.41948 6.46937 6.54975 6.63796 6.74449 6.90343 7.25087 7.62605 8.35693 8.58088 9.26014 9.46437 10.09607 10.77462 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035907 B = 0.003725 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.594837 B = 7514.670850 C = 7753.503492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.445 5.445 4 C -0.308 4.308 5 H 0.087 0.913 6 C 0.037 3.963 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.462 3.538 13 O -0.582 6.582 14 C -0.135 4.135 15 C -0.093 4.093 16 C -0.053 4.053 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.226 4.226 21 S 0.093 5.907 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.048 0.952 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -0.422 15.100 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.165 5.165 4 C -0.436 4.436 5 H 0.105 0.895 6 C -0.167 4.167 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.250 3.750 13 O -0.465 6.465 14 C -0.176 4.176 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.272 4.272 18 C -0.180 4.180 19 C -0.162 4.162 20 C -0.361 4.361 21 S 0.356 5.644 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.449 -0.688 14.935 15.344 hybrid contribution -1.282 0.796 -0.761 1.691 sum -4.732 0.108 14.174 14.943 Atomic orbital electron populations 1.22228 0.98341 1.00266 1.01504 1.21433 0.91515 0.85735 1.03369 1.43478 1.56344 1.11721 1.04936 1.19417 1.34599 0.98471 0.91075 0.89542 1.25413 0.94128 0.96592 1.00518 1.69936 1.29741 1.17659 1.33790 0.86036 0.78110 0.78990 0.82566 1.19225 1.20787 1.20673 1.20406 0.81733 0.87870 0.84983 1.90514 1.50126 1.18876 1.86986 1.21653 1.02193 0.99419 0.94294 1.21288 1.02964 0.98230 0.90685 1.20297 1.02540 0.95616 0.90777 1.24621 0.96331 1.03831 1.02467 1.20120 1.01160 0.98054 0.98691 1.20151 0.95677 1.01682 0.98641 1.25552 0.99195 1.05056 1.06302 1.84341 1.15568 1.36142 1.28331 0.93830 0.92498 0.93177 0.88003 0.93365 0.92419 0.90244 0.90451 0.91231 0.91288 0.90787 0.90015 0.84364 0.84592 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.15 37.16 0.38 -2.55 16 2 C 0.10 2.24 5.41 -4.04 -0.02 2.21 16 3 N -0.44 -11.36 2.50 -114.81 -0.29 -11.65 16 4 C -0.31 -8.65 8.84 -14.93 -0.13 -8.78 16 5 H 0.09 2.55 7.82 -52.49 -0.41 2.14 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.87 11.61 55.50 0.64 -23.23 16 8 Si 0.92 20.87 29.59 -169.99 -5.03 15.84 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.46 11.39 7.59 -10.98 -0.08 11.30 16 13 O -0.58 -16.53 15.89 5.55 0.09 -16.44 16 14 C -0.14 -2.45 4.31 -27.89 -0.12 -2.57 16 15 C -0.09 -1.54 4.49 -26.73 -0.12 -1.66 16 16 C -0.05 -0.68 5.71 -27.88 -0.16 -0.84 16 17 C -0.16 -2.00 5.76 -36.00 -0.21 -2.21 16 18 C -0.15 -1.81 10.05 -41.21 -0.41 -2.22 16 19 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 20 C -0.23 -2.43 11.23 29.04 0.33 -2.10 16 21 S 0.09 1.13 23.33 -107.50 -2.51 -1.38 16 22 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 2.44 5.76 -51.93 -0.30 2.14 16 26 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.08 1.35 7.41 -51.93 -0.38 0.97 16 29 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 30 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -31.66 314.94 -8.46 -40.13 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.06 Total: 2.33 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.06 Total: -10.34 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.36 Total: -34.87 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.66 -8.46 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.012 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds