Wall clock time and date at job start Mon Mar 30 2020 00:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46807 * 2 1 4 4 C 1.37100 * 120.00402 * 264.76721 * 3 2 1 5 5 H 1.07997 * 120.00018 * 138.85440 * 4 3 2 6 6 C 1.38955 * 119.99651 * 318.85669 * 4 3 2 7 7 N 1.31408 * 120.00271 * 341.82467 * 6 4 3 8 8 Si 1.86797 * 119.99519 * 161.82234 * 6 4 3 9 9 H 1.48502 * 109.47552 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47221 * 120.00169 * 8 6 4 11 11 H 1.48506 * 109.47111 * 239.99990 * 8 6 4 12 12 C 1.34781 * 119.99898 * 84.77650 * 3 2 1 13 13 O 1.21291 * 119.99824 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99927 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47446 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.47376 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47223 * 180.02562 * 16 15 14 18 18 C 1.33383 * 125.20493 * 89.99550 * 17 16 15 19 19 C 1.38423 * 114.92186 * 179.97438 * 18 17 16 20 20 C 1.33389 * 114.92154 * 0.02562 * 19 18 17 21 21 S 1.75881 * 109.59246 * 359.75893 * 20 19 18 22 22 H 1.08998 * 109.47048 * 299.99866 * 1 2 3 23 23 H 1.09001 * 109.46877 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47048 * 240.00134 * 2 1 3 26 26 H 1.09003 * 109.47303 * 120.00128 * 2 1 3 27 27 H 0.96999 * 119.99718 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46848 * 60.00799 * 14 12 3 29 29 H 1.08997 * 109.47637 * 300.00946 * 14 12 3 30 30 H 1.08998 * 109.46787 * 59.99965 * 15 14 12 31 31 H 1.09003 * 109.46705 * 300.00617 * 15 14 12 32 32 H 1.08998 * 109.47357 * 60.00111 * 16 15 14 33 33 H 1.09002 * 109.47031 * 299.99788 * 16 15 14 34 34 H 1.07994 * 122.54101 * 359.96320 * 18 17 16 35 35 H 1.08007 * 122.53919 * 180.02562 * 19 18 17 36 36 H 1.08005 * 125.20023 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0219 -1.3534 6 6 3.0372 1.2843 -2.1605 7 7 3.6792 0.1819 -1.8451 8 14 3.0498 1.9006 -3.9238 9 1 2.2583 3.1537 -4.0160 10 1 4.4487 2.1672 -4.3451 11 1 2.4530 0.8711 -4.8123 12 6 2.1427 2.0520 1.1624 13 8 2.5465 3.1957 1.1623 14 6 1.7790 1.3814 2.4620 15 6 2.0100 2.3541 3.6201 16 6 1.6413 1.6730 4.9395 17 6 1.8683 2.6314 6.0802 18 6 0.9606 3.4814 6.5625 19 6 1.3976 4.2653 7.6164 20 6 2.6604 4.0523 7.9895 21 16 3.3686 2.7955 6.9834 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 4.1593 -0.3119 -2.5281 28 1 2.4006 0.4967 2.6007 29 1 0.7295 1.0879 2.4382 30 1 1.3882 3.2385 3.4812 31 1 3.0594 2.6479 3.6439 32 1 2.2634 0.7888 5.0782 33 1 0.5920 1.3790 4.9159 34 1 -0.0394 3.5528 6.1612 35 1 0.7641 4.9943 8.0999 36 1 3.1687 4.5692 8.7901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:35 Heat of formation + Delta-G solvation = -33.799035 kcal Electronic energy + Delta-G solvation = -17691.171086 eV Core-core repulsion = 14879.921546 eV Total energy + Delta-G solvation = -2811.249539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47766 -38.84925 -36.96213 -35.57277 -33.99007 -31.34962 -31.05612 -28.10082 -26.53664 -24.50548 -23.79699 -22.58577 -20.46776 -20.08435 -18.71371 -18.07211 -17.51801 -16.93518 -16.56741 -16.16645 -15.92352 -15.13440 -14.57389 -14.49564 -14.41112 -13.88819 -13.60419 -13.57912 -13.39096 -13.22004 -12.87944 -12.67907 -12.60652 -12.52958 -12.35333 -12.13053 -12.00747 -11.84666 -11.64802 -11.45791 -10.87428 -10.30457 -9.51019 -9.37921 -9.36906 -8.32849 -6.09295 0.12551 0.76440 1.14946 1.36156 1.40347 1.54030 1.88658 2.11130 2.30917 3.02524 3.12708 3.81520 4.00311 4.06576 4.26749 4.32652 4.34974 4.51275 4.60074 4.66827 4.72765 4.75681 4.80116 4.88989 4.95365 5.09095 5.16615 5.31749 5.33862 5.40549 5.44425 5.47268 5.58829 5.65594 6.25867 6.59210 7.21990 7.51432 8.12834 8.70878 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035907 B = 0.003725 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.594837 B = 7514.670850 C = 7753.503492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.458 5.458 4 C -0.343 4.343 5 H 0.057 0.943 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.980 3.020 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.262 1.262 12 C 0.443 3.557 13 O -0.634 6.634 14 C -0.120 4.120 15 C -0.083 4.083 16 C -0.042 4.042 17 C -0.179 4.179 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.219 4.219 21 S 0.064 5.936 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.272 0.728 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -1.403 16.047 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.177 5.177 4 C -0.471 4.471 5 H 0.075 0.925 6 C -0.199 4.199 7 N -0.530 5.530 8 Si 0.803 3.197 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.187 1.187 12 C 0.234 3.766 13 O -0.521 6.521 14 C -0.160 4.160 15 C -0.122 4.122 16 C -0.081 4.081 17 C -0.297 4.297 18 C -0.182 4.182 19 C -0.171 4.171 20 C -0.355 4.355 21 S 0.327 5.673 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.731 -1.714 15.888 16.666 hybrid contribution -0.856 1.138 -1.021 1.752 sum -5.588 -0.576 14.868 15.893 Atomic orbital electron populations 1.22117 0.95150 1.02550 1.01399 1.21567 0.94103 0.83419 1.03091 1.43801 1.56275 1.13074 1.04580 1.19365 1.36491 0.98014 0.93251 0.92476 1.26136 0.93171 0.96643 1.03905 1.69996 1.29614 1.18236 1.35138 0.85098 0.78016 0.78677 0.77861 1.19646 1.20553 1.18666 1.21532 0.80745 0.87497 0.86854 1.90469 1.52345 1.21289 1.88004 1.21605 1.04183 0.99430 0.90802 1.21156 1.00890 0.97727 0.92446 1.20175 1.04071 0.95437 0.88371 1.24693 0.96740 1.04950 1.03278 1.20448 1.01646 0.97436 0.98633 1.20471 0.96098 1.02048 0.98487 1.25901 0.99182 1.04127 1.06249 1.84414 1.16203 1.37422 1.29220 0.92263 0.94290 0.89605 0.90570 0.91258 0.91812 0.88607 0.87330 0.92889 0.94148 0.89792 0.87698 0.83068 0.82098 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 10.15 71.98 0.73 -4.38 16 2 C 0.10 4.27 5.41 86.38 0.47 4.74 16 3 N -0.46 -23.73 2.50 -635.52 -1.59 -25.32 16 4 C -0.34 -19.91 8.84 84.04 0.74 -19.17 16 5 H 0.06 3.57 7.82 -2.91 -0.02 3.54 16 6 C 0.00 0.21 4.95 84.93 0.42 0.63 16 7 N -0.89 -48.95 11.61 21.66 0.25 -48.69 16 8 Si 0.98 43.16 29.59 68.60 2.03 45.19 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 C 0.44 22.25 7.59 87.66 0.67 22.92 16 13 O -0.63 -37.64 15.89 -3.06 -0.05 -37.69 16 14 C -0.12 -4.21 4.31 29.85 0.13 -4.08 16 15 C -0.08 -2.74 4.49 30.59 0.14 -2.60 16 16 C -0.04 -0.98 5.71 29.85 0.17 -0.81 16 17 C -0.18 -4.40 5.76 24.59 0.14 -4.26 16 18 C -0.15 -3.36 10.05 21.21 0.21 -3.15 16 19 C -0.14 -2.76 10.18 21.22 0.22 -2.54 16 20 C -0.22 -4.31 11.23 66.72 0.75 -3.56 16 21 S 0.06 1.52 23.33 -56.49 -1.32 0.20 16 22 H 0.06 1.76 6.60 -2.39 -0.02 1.75 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.08 3.62 5.76 -2.39 -0.01 3.61 16 26 H 0.07 2.57 6.66 -2.39 -0.02 2.56 16 27 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 28 H 0.10 3.06 7.41 -2.38 -0.02 3.04 16 29 H 0.11 3.12 6.54 -2.39 -0.02 3.11 16 30 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.41 314.94 5.17 -66.25 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.06 Total: 16.33 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.78 Total: -16.26 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.34 Total: -74.02 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.05 Total: -37.69 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.32 Total: 0.20 kcal Total: -71.41 5.17 -66.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.446 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds