Wall clock time and date at job start Mon Mar 30 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46920 * 2 1 4 4 C 1.50694 * 109.47115 * 239.99702 * 2 1 3 5 5 H 1.08000 * 119.99932 * 240.00172 * 4 2 1 6 6 C 1.37871 * 120.00374 * 59.99667 * 4 2 1 7 7 N 1.31513 * 119.99902 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00397 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46967 * 90.00241 * 8 6 4 10 10 H 1.48502 * 109.47491 * 210.00384 * 8 6 4 11 11 H 1.48499 * 109.47271 * 330.00773 * 8 6 4 12 12 N 1.46505 * 109.47039 * 119.99627 * 2 1 3 13 13 C 1.34780 * 119.99588 * 275.00069 * 12 2 1 14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 1.09000 * 109.47219 * 300.00501 * 1 2 3 24 24 H 1.08999 * 109.47399 * 60.00414 * 1 2 3 25 25 H 1.09003 * 109.47444 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00634 * 179.97438 * 7 6 4 27 27 H 0.96992 * 119.99723 * 95.00079 * 12 2 1 28 28 H 1.08997 * 109.47561 * 59.99923 * 15 13 12 29 29 H 1.09000 * 109.46976 * 299.99617 * 15 13 12 30 30 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 31 31 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 32 32 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 33 33 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 34 34 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 35 35 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 36 36 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4826 7 7 0.9435 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4121 10 1 2.4873 -0.1406 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8590 1.1588 2.4114 15 6 2.6499 -0.7282 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2105 -0.4664 6.0082 18 6 3.2611 0.5020 7.1618 19 6 2.2631 0.7328 8.0163 20 6 2.5409 1.6673 8.9989 21 6 3.7647 2.1950 8.9428 22 16 4.6474 1.4951 7.5920 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7094 1.1615 -3.4844 27 1 2.2490 -1.6316 1.1527 28 1 3.6492 -1.1201 3.3981 29 1 1.9776 -1.5505 3.8327 30 1 1.7011 0.6462 4.9483 31 1 3.3725 1.0774 4.5140 32 1 4.2100 -0.8581 5.8191 33 1 2.5382 -1.2887 6.2529 34 1 1.3104 0.2290 7.9465 35 1 1.8217 1.9473 9.7543 36 1 4.1552 2.9357 9.6248 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:55 Heat of formation + Delta-G solvation = -29.026583 kcal Electronic energy + Delta-G solvation = -17171.823911 eV Core-core repulsion = 14360.781321 eV Total energy + Delta-G solvation = -2811.042590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95625 -38.05431 -35.10355 -34.34250 -32.35015 -30.56981 -28.79839 -26.57937 -25.23953 -23.70396 -21.96336 -20.61527 -19.39801 -19.28893 -17.46268 -16.77414 -15.73952 -15.61297 -15.30008 -15.15210 -14.20594 -13.83310 -13.59400 -13.24997 -12.82598 -12.64566 -12.54966 -12.32309 -11.88476 -11.66849 -11.48705 -11.31322 -11.06584 -10.92687 -10.88087 -10.68592 -10.56598 -10.30865 -10.22602 -9.03091 -8.97134 -8.72373 -8.58906 -8.53852 -7.86660 -6.11192 -4.20564 0.88539 1.52138 1.89304 2.63026 3.24542 3.31352 3.33591 3.46728 4.12273 4.38789 4.65608 4.91448 4.98608 5.18783 5.21323 5.23640 5.40444 5.45578 5.54796 5.67659 5.72223 5.93467 5.97587 6.17351 6.23746 6.38268 6.44786 6.84493 6.98775 7.17594 7.50141 7.59020 7.71560 7.93898 8.17050 8.71189 8.80434 9.18728 9.47438 10.94810 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.047672 B = 0.002971 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.208274 B = 9422.556077 C = 9553.685286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.557 6.557 15 C -0.142 4.142 16 C -0.097 4.097 17 C -0.052 4.052 18 C -0.161 4.161 19 C -0.147 4.147 20 C -0.131 4.131 21 C -0.223 4.223 22 S 0.094 5.906 23 H 0.014 0.986 24 H 0.089 0.911 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -3.145 20.258 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.436 6.436 15 C -0.182 4.182 16 C -0.135 4.135 17 C -0.091 4.091 18 C -0.278 4.278 19 C -0.177 4.177 20 C -0.162 4.162 21 C -0.358 4.358 22 S 0.357 5.643 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.025 -1.962 19.546 20.547 hybrid contribution -1.052 -1.023 -0.271 1.493 sum 4.973 -2.986 19.275 20.128 Atomic orbital electron populations 1.22074 0.98568 0.99029 1.00855 1.18719 0.90975 0.93991 0.80176 0.93464 1.21232 1.32393 1.13178 0.90401 0.92108 1.24898 0.94853 0.94952 0.99079 1.69905 1.35959 1.22416 1.23852 0.86448 0.79156 0.79265 0.82221 1.20555 1.21065 1.19864 1.46544 1.65196 1.13514 1.10687 1.20484 0.78693 0.87601 0.84905 1.90654 1.51431 1.16258 1.85289 1.21689 1.02775 0.99578 0.94207 1.21317 1.02986 0.97806 0.91398 1.20258 1.02488 0.95456 0.90905 1.24572 0.97009 1.04013 1.02223 1.20138 1.00202 1.01164 0.96199 1.20167 0.96868 0.98527 1.00648 1.25574 0.98977 1.07603 1.03658 1.84335 1.16779 1.37528 1.25677 0.96701 0.89206 0.95532 0.92587 0.77980 0.89470 0.89491 0.90872 0.91008 0.90705 0.89871 0.84313 0.84490 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.27 8.73 -34.45 -0.30 -14.57 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.85 5.07 -54.93 -0.28 -15.13 16 13 C 0.50 9.85 7.79 -10.98 -0.09 9.77 16 14 O -0.56 -13.45 15.64 5.56 0.09 -13.37 16 15 C -0.14 -1.91 5.70 -27.88 -0.16 -2.07 16 16 C -0.10 -1.27 4.49 -26.73 -0.12 -1.39 16 17 C -0.05 -0.52 5.71 -27.88 -0.16 -0.68 16 18 C -0.16 -1.76 5.76 -36.00 -0.21 -1.97 16 19 C -0.15 -1.54 10.05 -41.21 -0.41 -1.95 16 20 C -0.13 -1.26 10.18 -41.21 -0.42 -1.68 16 21 C -0.22 -2.11 11.23 29.04 0.33 -1.79 16 22 S 0.09 0.98 23.33 -107.50 -2.51 -1.53 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.07 1.07 8.10 -51.92 -0.42 0.65 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -31.43 320.44 -8.97 -40.41 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.24 Total: 5.03 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.47 Total: -11.41 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.35 Total: -39.67 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.43 -8.97 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.381 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds