Wall clock time and date at job start Mon Mar 30 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46920 * 2 1 4 4 C 1.50694 * 109.47115 * 239.99702 * 2 1 3 5 5 H 1.08000 * 119.99932 * 240.00172 * 4 2 1 6 6 C 1.37871 * 120.00374 * 59.99667 * 4 2 1 7 7 N 1.31513 * 119.99902 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00397 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46967 * 90.00241 * 8 6 4 10 10 H 1.48502 * 109.47491 * 210.00384 * 8 6 4 11 11 H 1.48499 * 109.47271 * 330.00773 * 8 6 4 12 12 N 1.46505 * 109.47039 * 119.99627 * 2 1 3 13 13 C 1.34780 * 119.99588 * 275.00069 * 12 2 1 14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 1.09000 * 109.47219 * 300.00501 * 1 2 3 24 24 H 1.08999 * 109.47399 * 60.00414 * 1 2 3 25 25 H 1.09003 * 109.47444 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00634 * 179.97438 * 7 6 4 27 27 H 0.96992 * 119.99723 * 95.00079 * 12 2 1 28 28 H 1.08997 * 109.47561 * 59.99923 * 15 13 12 29 29 H 1.09000 * 109.46976 * 299.99617 * 15 13 12 30 30 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 31 31 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 32 32 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 33 33 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 34 34 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 35 35 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 36 36 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4826 7 7 0.9435 0.8299 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4121 10 1 2.4873 -0.1406 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8590 1.1588 2.4114 15 6 2.6499 -0.7282 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2105 -0.4664 6.0082 18 6 3.2611 0.5020 7.1618 19 6 2.2631 0.7328 8.0163 20 6 2.5409 1.6673 8.9989 21 6 3.7647 2.1950 8.9428 22 16 4.6474 1.4951 7.5920 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7094 1.1615 -3.4844 27 1 2.2490 -1.6316 1.1527 28 1 3.6492 -1.1201 3.3981 29 1 1.9776 -1.5505 3.8327 30 1 1.7011 0.6462 4.9483 31 1 3.3725 1.0774 4.5140 32 1 4.2100 -0.8581 5.8191 33 1 2.5382 -1.2887 6.2529 34 1 1.3104 0.2290 7.9465 35 1 1.8217 1.9473 9.7543 36 1 4.1552 2.9357 9.6248 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:55 Heat of formation + Delta-G solvation = -48.210780 kcal Electronic energy + Delta-G solvation = -17172.655800 eV Core-core repulsion = 14360.781321 eV Total energy + Delta-G solvation = -2811.874479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57070 -38.85433 -36.81985 -35.56281 -34.29573 -31.79125 -30.44365 -27.58930 -27.31529 -24.69844 -23.20988 -22.12750 -21.03337 -20.11144 -18.93084 -17.98418 -17.27858 -17.12599 -16.69237 -16.28825 -15.91341 -15.11364 -14.78648 -14.52742 -14.33539 -13.81417 -13.72919 -13.49368 -13.32839 -13.06716 -12.86304 -12.76601 -12.59879 -12.42106 -12.30512 -12.27216 -12.12866 -11.72499 -11.48391 -11.10027 -10.70100 -10.55081 -9.71112 -9.51473 -9.37699 -8.17602 -6.35552 0.11931 0.76399 1.13859 1.44801 1.45810 1.56437 1.87761 1.89827 2.36898 2.71340 3.12668 3.77915 3.97350 4.07858 4.25309 4.31560 4.49444 4.62615 4.72034 4.74346 4.77042 4.82665 4.91079 4.94311 5.09639 5.13902 5.31085 5.39401 5.43343 5.45218 5.62948 5.64915 5.70742 5.92682 6.10812 6.73498 7.02501 7.33118 7.63307 8.88819 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.047672 B = 0.002971 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.208274 B = 9422.556077 C = 9553.685286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.708 5.708 13 C 0.490 3.510 14 O -0.608 6.608 15 C -0.126 4.126 16 C -0.091 4.091 17 C -0.042 4.042 18 C -0.180 4.180 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.222 4.222 22 S 0.068 5.932 23 H 0.010 0.990 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -5.429 21.199 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.357 5.357 13 C 0.278 3.722 14 O -0.491 6.491 15 C -0.166 4.166 16 C -0.129 4.129 17 C -0.081 4.081 18 C -0.297 4.297 19 C -0.183 4.183 20 C -0.172 4.172 21 C -0.357 4.357 22 S 0.331 5.669 23 H 0.029 0.971 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.691 -4.290 20.516 22.002 hybrid contribution -1.277 -0.232 -0.496 1.389 sum 5.415 -4.522 20.020 21.227 Atomic orbital electron populations 1.21894 0.98443 0.99459 0.99416 1.18308 0.91065 0.91822 0.82362 0.98829 1.21575 1.32545 1.13552 0.90828 0.90707 1.25847 0.94905 0.95586 1.02484 1.70063 1.37146 1.23992 1.24596 0.85313 0.79026 0.77993 0.77805 1.19549 1.21329 1.18698 1.46316 1.65284 1.14304 1.09809 1.21649 0.77264 0.87170 0.86077 1.90634 1.53415 1.18878 1.86150 1.21693 1.04789 0.99629 0.90456 1.21221 1.01409 0.97413 0.92901 1.20195 1.03622 0.95389 0.88908 1.24749 0.97244 1.04712 1.02969 1.20448 1.00563 1.01184 0.96145 1.20475 0.97392 0.98328 1.01039 1.25896 0.98828 1.07704 1.03297 1.84388 1.17558 1.38211 1.26738 0.97087 0.91660 0.93937 0.92579 0.75823 0.86493 0.85918 0.92824 0.93610 0.89358 0.87615 0.83083 0.82380 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.13 2.56 44.24 0.11 14.24 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.13 8.73 25.60 0.22 -28.90 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -53.47 11.32 21.44 0.24 -53.22 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.71 -29.11 5.07 -446.08 -2.26 -31.37 16 13 C 0.49 19.22 7.79 87.66 0.68 19.91 16 14 O -0.61 -30.38 15.64 -3.03 -0.05 -30.42 16 15 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 16 C -0.09 -2.29 4.49 30.59 0.14 -2.15 16 17 C -0.04 -0.75 5.71 29.85 0.17 -0.58 16 18 C -0.18 -3.70 5.76 24.59 0.14 -3.55 16 19 C -0.15 -2.96 10.05 21.22 0.21 -2.74 16 20 C -0.14 -2.49 10.18 21.22 0.22 -2.27 16 21 C -0.22 -3.90 11.23 66.72 0.75 -3.15 16 22 S 0.07 1.38 23.33 -56.49 -1.32 0.06 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.06 3.69 6.07 -2.39 -0.01 3.67 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.41 13.61 8.54 -92.71 -0.79 12.82 16 28 H 0.12 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.05 1.38 8.10 -2.38 -0.02 1.36 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -70.61 320.44 2.85 -67.76 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.28 Total: 20.35 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.93 Total: -17.25 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.02 Total: -84.60 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.42 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.06 kcal Total: -70.61 2.85 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.548 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds