Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35761 * 117.00066 * 2 1 4 4 C 1.38934 * 119.92008 * 359.73246 * 3 2 1 5 5 C 1.37728 * 120.12106 * 179.76057 * 4 3 2 6 6 C 1.39721 * 119.94794 * 0.50978 * 5 4 3 7 7 C 1.47604 * 120.08048 * 179.71930 * 6 5 4 8 8 O 1.21589 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00069 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46900 * 35.00665 * 10 9 7 12 12 C 1.53000 * 109.47204 * 274.99843 * 10 9 7 13 13 C 1.50704 * 109.46705 * 154.99865 * 10 9 7 14 14 H 1.07996 * 120.00030 * 35.00982 * 13 10 9 15 15 C 1.37874 * 120.00063 * 215.00224 * 13 10 9 16 16 N 1.31510 * 120.00407 * 184.92224 * 15 13 10 17 17 Si 1.86803 * 119.99738 * 4.91680 * 15 13 10 18 18 H 1.48504 * 109.47058 * 84.83785 * 17 15 13 19 19 H 1.48504 * 109.47179 * 204.83285 * 17 15 13 20 20 H 1.48501 * 109.47320 * 324.83561 * 17 15 13 21 21 C 1.39732 * 119.84041 * 359.74246 * 6 5 4 22 22 C 1.37897 * 119.88504 * 0.02562 * 21 6 5 23 23 F 1.35096 * 119.98440 * 179.97438 * 22 21 6 24 24 H 1.08996 * 109.47008 * 59.99397 * 1 2 3 25 25 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46540 * 299.99587 * 1 2 3 27 27 H 1.08003 * 119.93789 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.03015 * 180.22966 * 5 4 3 29 29 H 0.96999 * 119.99737 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.46850 * 55.04090 * 12 10 9 31 31 H 1.08997 * 109.46551 * 175.03612 * 12 10 9 32 32 H 1.08998 * 109.47275 * 295.04188 * 12 10 9 33 33 H 0.97006 * 120.00143 * 180.02562 * 16 15 13 34 34 H 1.08007 * 120.06413 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3738 -0.0056 5 6 1.9081 3.6031 -0.0007 6 6 3.3032 3.6799 -0.0007 7 6 3.9717 4.9959 -0.0017 8 8 5.1858 5.0610 -0.0022 9 7 3.2363 6.1253 -0.0020 10 6 3.8999 7.4314 -0.0024 11 1 4.8148 7.3739 -0.5919 12 6 4.2430 7.8296 1.4345 13 6 2.9793 8.4623 -0.6031 14 1 1.9138 8.3954 -0.4398 15 6 3.4973 9.4910 -1.3611 16 7 2.7067 10.4439 -1.8044 17 14 5.3221 9.5312 -1.7583 18 1 5.5857 8.6988 -2.9595 19 1 5.7400 10.9311 -2.0248 20 1 6.0914 8.9957 -0.6065 21 6 4.0640 2.5079 -0.0004 22 6 3.4353 1.2806 -0.0005 23 9 4.1689 0.1461 -0.0007 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2087 2.3146 -0.0104 28 1 1.3171 4.5071 -0.0013 29 1 2.2677 6.0733 -0.0019 30 1 4.8363 7.0415 1.8981 31 1 4.8141 8.7580 1.4277 32 1 3.3231 7.9730 2.0014 33 1 3.0711 11.1674 -2.3380 34 1 5.1426 2.5630 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060028462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = -96.121727 kcal Electronic energy + Delta-G solvation = -19693.629640 eV Core-core repulsion = 16313.464410 eV Total energy + Delta-G solvation = -3380.165230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.85444 -40.36502 -39.16440 -37.09383 -34.96712 -32.49806 -31.05022 -30.80356 -29.35393 -27.58069 -25.35536 -23.71536 -22.83100 -21.04539 -19.73585 -18.75923 -17.95465 -17.03843 -16.64273 -16.38215 -15.92547 -15.25551 -15.21403 -14.92110 -14.42357 -14.39405 -14.19084 -13.39030 -13.00685 -12.76934 -12.54337 -12.51624 -12.36643 -12.05460 -11.60940 -11.35039 -11.23063 -11.11727 -10.84731 -10.61350 -9.91265 -9.36821 -9.24763 -9.13645 -8.74198 -8.44976 -8.11303 -6.27288 -4.31632 0.74963 0.98723 2.83095 2.96625 3.24765 3.32775 3.39964 3.75445 3.91848 4.09489 4.29856 4.46217 4.70818 4.82762 4.90715 4.96288 5.04111 5.14826 5.19427 5.36283 5.67507 5.81577 5.97366 6.14965 6.31108 6.39777 6.49476 6.64173 6.89722 6.98213 7.14517 7.32234 7.48534 8.07209 8.48889 8.71852 8.86514 9.34475 10.84226 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.004381 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.409334 B = 6390.374400 C = 6858.757761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.111 3.889 4 C -0.190 4.190 5 C -0.054 4.054 6 C -0.132 4.132 7 C 0.545 3.455 8 O -0.553 6.553 9 N -0.695 5.695 10 C 0.230 3.770 11 H 0.052 0.948 12 C -0.148 4.148 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.888 5.888 17 Si 0.874 3.126 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.260 1.260 21 C -0.061 4.061 22 C 0.059 3.941 23 F -0.132 7.132 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.392 0.608 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -17.505 3.939 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.064 3.936 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.135 4.135 7 C 0.331 3.669 8 O -0.434 6.434 9 N -0.344 5.344 10 C 0.128 3.872 11 H 0.070 0.930 12 C -0.207 4.207 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.122 4.122 16 N -0.524 5.524 17 Si 0.700 3.300 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.184 1.184 21 C -0.081 4.081 22 C 0.040 3.960 23 F -0.110 7.110 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.227 0.773 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.603 -17.454 3.828 18.452 hybrid contribution 0.200 0.057 -0.321 0.382 sum -4.403 -17.397 3.507 18.285 Atomic orbital electron populations 1.23161 0.77707 1.04337 1.01824 1.86094 1.21940 1.25890 1.88253 1.19209 0.90783 0.85633 0.97975 1.21064 1.00466 0.91099 1.08207 1.21282 0.93542 0.97883 0.94607 1.20004 0.93389 0.94155 1.05980 1.18082 0.87199 0.83907 0.77713 1.90737 1.13526 1.87486 1.51603 1.46608 1.09956 1.06377 1.71418 1.19186 0.94589 0.79511 0.93902 0.93012 1.22220 1.00042 0.99793 0.98623 1.20988 0.95045 1.08368 1.32606 0.90290 1.24931 0.98044 0.94945 0.94316 1.69876 1.35780 1.11656 1.35072 0.86900 0.85666 0.77346 0.80070 1.19776 1.21132 1.18402 1.21116 1.01965 0.88851 0.96133 1.16764 0.85851 0.82883 1.10551 1.91502 1.76597 1.48479 1.94454 0.92139 0.87929 0.92187 0.83916 0.84099 0.77294 0.95113 0.92779 0.93345 0.92174 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.45 10.35 -18.99 -0.20 -3.64 16 3 C 0.11 1.35 6.70 -38.98 -0.26 1.09 16 4 C -0.19 -2.00 9.01 -39.51 -0.36 -2.35 16 5 C -0.05 -0.66 9.53 -39.21 -0.37 -1.03 16 6 C -0.13 -2.02 5.87 -104.96 -0.62 -2.64 16 7 C 0.55 10.57 7.73 -12.44 -0.10 10.47 16 8 O -0.55 -12.64 16.00 5.29 0.08 -12.55 16 9 N -0.70 -13.70 5.02 -55.95 -0.28 -13.98 16 10 C 0.23 5.39 2.22 -69.08 -0.15 5.23 16 11 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 12 C -0.15 -3.19 9.47 37.16 0.35 -2.84 16 13 C -0.53 -13.97 9.05 -34.44 -0.31 -14.28 16 14 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 17 Si 0.87 21.29 26.99 -169.99 -4.59 16.70 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.24 6.82 56.52 0.39 -5.85 16 21 C -0.06 -0.90 9.56 -39.15 -0.37 -1.27 16 22 C 0.06 0.82 7.30 -39.36 -0.29 0.54 16 23 F -0.13 -1.91 17.10 2.25 0.04 -1.87 16 24 H 0.06 0.33 7.64 -51.93 -0.40 -0.07 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 27 H 0.14 1.05 6.28 -52.48 -0.33 0.72 16 28 H 0.14 1.47 6.39 -52.48 -0.34 1.13 16 29 H 0.39 6.62 6.61 -40.82 -0.27 6.35 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.16 2.29 7.64 -52.48 -0.40 1.89 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -31.89 298.06 -4.90 -36.79 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.64 Total: 2.73 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.59 Total: -3.76 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.49 Total: -38.89 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.11 Total: -16.20 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.89 -4.90 -36.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060028462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.330 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds