Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35761 * 117.00066 * 2 1 4 4 C 1.38934 * 119.92008 * 359.73246 * 3 2 1 5 5 C 1.37728 * 120.12106 * 179.76057 * 4 3 2 6 6 C 1.39721 * 119.94794 * 0.50978 * 5 4 3 7 7 C 1.47604 * 120.08048 * 179.71930 * 6 5 4 8 8 O 1.21589 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00069 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46900 * 35.00665 * 10 9 7 12 12 C 1.53000 * 109.47204 * 274.99843 * 10 9 7 13 13 C 1.50704 * 109.46705 * 154.99865 * 10 9 7 14 14 H 1.07996 * 120.00030 * 35.00982 * 13 10 9 15 15 C 1.37874 * 120.00063 * 215.00224 * 13 10 9 16 16 N 1.31510 * 120.00407 * 184.92224 * 15 13 10 17 17 Si 1.86803 * 119.99738 * 4.91680 * 15 13 10 18 18 H 1.48504 * 109.47058 * 84.83785 * 17 15 13 19 19 H 1.48504 * 109.47179 * 204.83285 * 17 15 13 20 20 H 1.48501 * 109.47320 * 324.83561 * 17 15 13 21 21 C 1.39732 * 119.84041 * 359.74246 * 6 5 4 22 22 C 1.37897 * 119.88504 * 0.02562 * 21 6 5 23 23 F 1.35096 * 119.98440 * 179.97438 * 22 21 6 24 24 H 1.08996 * 109.47008 * 59.99397 * 1 2 3 25 25 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46540 * 299.99587 * 1 2 3 27 27 H 1.08003 * 119.93789 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.03015 * 180.22966 * 5 4 3 29 29 H 0.96999 * 119.99737 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.46850 * 55.04090 * 12 10 9 31 31 H 1.08997 * 109.46551 * 175.03612 * 12 10 9 32 32 H 1.08998 * 109.47275 * 295.04188 * 12 10 9 33 33 H 0.97006 * 120.00143 * 180.02562 * 16 15 13 34 34 H 1.08007 * 120.06413 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3738 -0.0056 5 6 1.9081 3.6031 -0.0007 6 6 3.3032 3.6799 -0.0007 7 6 3.9717 4.9959 -0.0017 8 8 5.1858 5.0610 -0.0022 9 7 3.2363 6.1253 -0.0020 10 6 3.8999 7.4314 -0.0024 11 1 4.8148 7.3739 -0.5919 12 6 4.2430 7.8296 1.4345 13 6 2.9793 8.4623 -0.6031 14 1 1.9138 8.3954 -0.4398 15 6 3.4973 9.4910 -1.3611 16 7 2.7067 10.4439 -1.8044 17 14 5.3221 9.5312 -1.7583 18 1 5.5857 8.6988 -2.9595 19 1 5.7400 10.9311 -2.0248 20 1 6.0914 8.9957 -0.6065 21 6 4.0640 2.5079 -0.0004 22 6 3.4353 1.2806 -0.0005 23 9 4.1689 0.1461 -0.0007 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2087 2.3146 -0.0104 28 1 1.3171 4.5071 -0.0013 29 1 2.2677 6.0733 -0.0019 30 1 4.8363 7.0415 1.8981 31 1 4.8141 8.7580 1.4277 32 1 3.3231 7.9730 2.0014 33 1 3.0711 11.1674 -2.3380 34 1 5.1426 2.5630 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060028462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = -118.049000 kcal Electronic energy + Delta-G solvation = -19694.580478 eV Core-core repulsion = 16313.464410 eV Total energy + Delta-G solvation = -3381.116068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93031 -41.43413 -40.45263 -38.19264 -36.74146 -34.44080 -32.43499 -31.85734 -30.68832 -28.30100 -27.32380 -24.92552 -23.83864 -22.57206 -21.36517 -19.96660 -19.22732 -18.28029 -18.08047 -17.37199 -17.25371 -16.77759 -16.12535 -16.08020 -15.84913 -15.80168 -15.29317 -15.01747 -14.53482 -14.32040 -14.04810 -13.66978 -13.47911 -13.17636 -13.03963 -12.85697 -12.79137 -12.45041 -12.18831 -12.10217 -11.87348 -11.23071 -10.98439 -10.81684 -10.13775 -9.92056 -9.34156 -8.38577 -6.44607 -0.33384 -0.00422 1.30106 1.35449 1.45410 1.74619 2.05487 2.27507 2.31453 2.65057 3.01549 3.11355 3.58396 3.74750 3.84520 4.00885 4.34002 4.38348 4.43364 4.45304 4.69024 4.74629 4.75922 4.82645 4.85971 4.98221 5.09276 5.14045 5.35459 5.42288 5.45963 5.69659 6.11982 6.16378 6.60126 6.83594 7.20689 7.37387 8.75979 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031474 B = 0.004381 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.409334 B = 6390.374400 C = 6858.757761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.124 3.876 4 C -0.175 4.175 5 C -0.041 4.041 6 C -0.154 4.154 7 C 0.547 3.453 8 O -0.595 6.595 9 N -0.693 5.693 10 C 0.232 3.768 11 H 0.030 0.970 12 C -0.142 4.142 13 C -0.525 4.525 14 H 0.063 0.937 15 C 0.037 3.963 16 N -0.927 5.927 17 Si 0.922 3.078 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.257 1.257 21 C -0.065 4.065 22 C 0.040 3.960 23 F -0.140 7.140 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.161 0.839 29 H 0.407 0.593 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.271 0.729 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -18.988 4.383 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.076 3.924 4 C -0.193 4.193 5 C -0.060 4.060 6 C -0.158 4.158 7 C 0.335 3.665 8 O -0.478 6.478 9 N -0.342 5.342 10 C 0.129 3.871 11 H 0.048 0.952 12 C -0.201 4.201 13 C -0.564 4.564 14 H 0.081 0.919 15 C -0.164 4.164 16 N -0.565 5.565 17 Si 0.747 3.253 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.181 1.181 21 C -0.085 4.085 22 C 0.020 3.980 23 F -0.119 7.119 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.095 0.905 27 H 0.202 0.798 28 H 0.179 0.821 29 H 0.244 0.756 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.325 -18.963 4.281 20.443 hybrid contribution 0.576 0.345 -0.432 0.799 sum -5.748 -18.618 3.849 19.862 Atomic orbital electron populations 1.23578 0.74973 1.06354 1.03375 1.86101 1.24728 1.25345 1.87595 1.19326 0.90214 0.86805 0.96053 1.21418 1.02266 0.89450 1.06174 1.21497 0.92072 0.99545 0.92870 1.19623 0.94733 0.91779 1.09638 1.18569 0.86718 0.84983 0.76226 1.90707 1.15467 1.88212 1.53418 1.46282 1.10715 1.05407 1.71820 1.18955 0.93257 0.80480 0.94439 0.95177 1.22119 1.00740 0.99699 0.97515 1.21164 0.94718 1.08658 1.31812 0.91912 1.25539 1.01196 0.94949 0.94706 1.69960 1.37346 1.12621 1.36621 0.86133 0.81979 0.77532 0.79678 1.20127 1.20253 1.18090 1.20993 1.01537 0.89373 0.96606 1.16853 0.86880 0.82252 1.11974 1.91474 1.77019 1.48728 1.94670 0.90597 0.85981 0.90451 0.79811 0.82107 0.75582 0.94489 0.93253 0.91989 0.91993 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -6.23 10.35 -90.87 -0.94 -7.17 16 3 C 0.12 2.68 6.70 22.66 0.15 2.83 16 4 C -0.17 -2.97 9.01 22.32 0.20 -2.77 16 5 C -0.04 -0.88 9.53 22.51 0.21 -0.66 16 6 C -0.15 -4.58 5.87 -20.09 -0.12 -4.69 16 7 C 0.55 21.04 7.73 86.72 0.67 21.71 16 8 O -0.59 -27.60 16.00 -3.99 -0.06 -27.66 16 9 N -0.69 -26.72 5.02 -449.20 -2.25 -28.97 16 10 C 0.23 10.76 2.22 44.25 0.10 10.86 16 11 H 0.03 1.54 4.73 -2.39 -0.01 1.53 16 12 C -0.14 -5.98 9.47 71.98 0.68 -5.30 16 13 C -0.53 -27.49 9.05 25.60 0.23 -27.26 16 14 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 15 C 0.04 2.03 5.47 84.65 0.46 2.50 16 16 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 17 Si 0.92 44.01 26.99 68.60 1.85 45.87 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -12.03 6.82 99.48 0.68 -11.35 16 21 C -0.07 -1.92 9.56 22.55 0.22 -1.70 16 22 C 0.04 1.08 7.30 22.41 0.16 1.24 16 23 F -0.14 -4.02 17.10 44.97 0.77 -3.25 16 24 H 0.08 0.45 7.64 -2.39 -0.02 0.43 16 25 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.43 7.66 -2.39 -0.02 0.41 16 27 H 0.18 1.61 6.28 -2.91 -0.02 1.59 16 28 H 0.16 2.76 6.39 -2.91 -0.02 2.74 16 29 H 0.41 13.07 6.61 -92.71 -0.61 12.45 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 34 H 0.14 4.41 7.64 -2.91 -0.02 4.39 16 Total: -1.00 -69.51 298.06 4.25 -65.26 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.50 Total: 11.66 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.09 Total: -2.05 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.96 Total: -82.65 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.00 Total: -34.83 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.77 Total: -3.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.85 Total: 45.87 kcal Total: -69.51 4.25 -65.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060028462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.789 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds