Wall clock time and date at job start Mon Mar 30 2020 00:58:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35767 * 116.99991 * 2 1
4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1
5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2
6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3
7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4
8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5
9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5
10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6
11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7
12 12 C 1.50703 * 109.47056 * 179.97438 * 11 10 9
13 13 H 1.08006 * 120.00042 * 0.02562 * 12 11 10
14 14 C 1.37875 * 120.00357 * 179.97438 * 12 11 10
15 15 N 1.31519 * 119.99643 * 0.02562 * 14 12 11
16 16 Si 1.86803 * 120.00337 * 180.02562 * 14 12 11
17 17 H 1.48501 * 109.46993 * 0.02562 * 16 14 12
18 18 H 1.48501 * 109.46929 * 120.00330 * 16 14 12
19 19 H 1.48497 * 109.47095 * 239.99902 * 16 14 12
20 20 C 1.39739 * 119.83504 * 359.97431 * 6 5 4
21 21 C 1.37891 * 119.88633 * 0.02562 * 20 6 5
22 22 F 1.35099 * 119.98055 * 180.02562 * 21 20 6
23 23 H 1.08993 * 109.46983 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.46861 * 300.00316 * 1 2 3
25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3
26 26 H 1.07998 * 119.94581 * 0.25585 * 4 3 2
27 27 H 1.08001 * 120.02508 * 180.02562 * 5 4 3
28 28 H 0.96994 * 119.99839 * 359.97438 * 9 7 6
29 29 H 1.08998 * 109.47173 * 299.99173 * 10 9 7
30 30 H 1.09000 * 109.47623 * 59.99044 * 10 9 7
31 31 H 1.08997 * 109.47472 * 299.99535 * 11 10 9
32 32 H 1.09002 * 109.47306 * 60.00401 * 11 10 9
33 33 H 0.97006 * 119.99934 * 180.02562 * 15 14 12
34 34 H 1.08002 * 120.05353 * 180.02562 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0454 1.2097 0.0000
4 6 1.2870 2.3737 -0.0058
5 6 1.9081 3.6031 -0.0115
6 6 3.3032 3.6799 -0.0120
7 6 3.9717 4.9958 -0.0187
8 8 5.1858 5.0610 -0.0186
9 7 3.2363 6.1253 -0.0248
10 6 3.8998 7.4313 -0.0320
11 6 2.8447 8.5393 -0.0386
12 6 3.5273 9.8829 -0.0453
13 1 4.6058 9.9407 -0.0453
14 6 2.7750 11.0383 -0.0525
15 7 1.4617 10.9679 -0.0530
16 14 3.6211 12.7038 -0.0616
17 1 5.0935 12.5109 -0.0601
18 1 3.2219 13.4551 -1.2788
19 1 3.2203 13.4691 1.1461
20 6 4.0640 2.5078 -0.0062
21 6 3.4352 1.2806 -0.0005
22 9 4.1689 0.1462 0.0056
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 0.2087 2.3146 -0.0062
27 1 1.3171 4.5071 -0.0156
28 1 2.2677 6.0734 -0.0252
29 1 4.5224 7.5274 0.8575
30 1 4.5226 7.5177 -0.9223
31 1 2.2224 8.4432 -0.9283
32 1 2.2218 8.4532 0.8517
33 1 0.9324 11.7808 -0.0585
34 1 5.1426 2.5630 -0.0062
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000061669024.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:58:36
Heat of formation + Delta-G solvation = -102.447768 kcal
Electronic energy + Delta-G solvation = -19077.506725 eV
Core-core repulsion = 15697.067177 eV
Total energy + Delta-G solvation = -3380.439548 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.95777 -40.50457 -39.34289 -37.21211 -34.98442 -32.94835 -31.10359 -30.90693
-29.41925 -27.75626 -25.04345 -23.45653 -22.88432 -21.09824 -20.37265 -18.79414
-17.73826 -17.18526 -16.48256 -16.39855 -16.10211 -15.33369 -15.13413 -15.03728
-14.93012 -14.54874 -14.49965 -13.57776 -13.24532 -13.15454 -12.84337 -12.51849
-12.32575 -12.16746 -11.48119 -11.42876 -11.21911 -11.07218 -10.65621 -10.38901
-9.93173 -9.55857 -9.26743 -9.26104 -8.68981 -8.49823 -8.35447 -6.12866
-4.15561 0.59403 0.85857 2.73118 2.77781 3.26571 3.34104 3.38408
3.48671 3.69239 3.95350 4.34340 4.39046 4.59987 4.75743 4.76919
4.81211 4.89426 5.08531 5.24296 5.24614 5.53650 5.66606 5.81368
5.97507 6.25450 6.30054 6.31790 6.68435 6.81159 6.87426 7.46913
7.56592 7.85166 7.90505 8.23373 8.52586 8.90515 9.49624 10.98780
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.038201 B = 0.003252 C = 0.003005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 732.795763 B = 8608.765235 C = 9315.811192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.308 6.308
3 C 0.115 3.885
4 C -0.190 4.190
5 C -0.054 4.054
6 C -0.136 4.136
7 C 0.552 3.448
8 O -0.544 6.544
9 N -0.714 5.714
10 C 0.121 3.879
11 C 0.011 3.989
12 C -0.521 4.521
13 H 0.060 0.940
14 C 0.059 3.941
15 N -0.894 5.894
16 Si 0.897 3.103
17 H -0.271 1.271
18 H -0.283 1.283
19 H -0.283 1.283
20 C -0.059 4.059
21 C 0.060 3.940
22 F -0.130 7.130
23 H 0.103 0.897
24 H 0.060 0.940
25 H 0.060 0.940
26 H 0.145 0.855
27 H 0.141 0.859
28 H 0.397 0.603
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.023 0.977
32 H 0.023 0.977
33 H 0.262 0.738
34 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.849 -20.276 0.106 20.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.221 6.221
3 C 0.068 3.932
4 C -0.208 4.208
5 C -0.072 4.072
6 C -0.140 4.140
7 C 0.338 3.662
8 O -0.424 6.424
9 N -0.364 5.364
10 C -0.001 4.001
11 C -0.026 4.026
12 C -0.560 4.560
13 H 0.079 0.921
14 C -0.143 4.143
15 N -0.533 5.533
16 Si 0.724 3.276
17 H -0.196 1.196
18 H -0.209 1.209
19 H -0.209 1.209
20 C -0.078 4.078
21 C 0.040 3.960
22 F -0.109 7.109
23 H 0.122 0.878
24 H 0.079 0.921
25 H 0.079 0.921
26 H 0.162 0.838
27 H 0.159 0.841
28 H 0.231 0.769
29 H 0.078 0.922
30 H 0.077 0.923
31 H 0.041 0.959
32 H 0.041 0.959
33 H 0.071 0.929
34 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -4.029 -20.314 0.105 20.710
hybrid contribution -0.371 0.874 -0.005 0.950
sum -4.400 -19.440 0.101 19.932
Atomic orbital electron populations
1.23182 0.77552 1.04476 1.01877 1.86105 1.22064 1.25800 1.88091
1.19236 0.90809 0.85701 0.97483 1.21079 1.00592 0.91055 1.08095
1.21269 0.93432 0.97950 0.94599 1.19859 0.93373 0.93811 1.06925
1.18008 0.87033 0.83807 0.77388 1.90768 1.13451 1.87486 1.50651
1.46255 1.10281 1.06701 1.73198 1.21791 0.97214 0.79998 1.01106
1.19343 0.93629 0.91727 0.97893 1.21085 0.93338 0.90302 1.51250
0.92134 1.24997 0.94850 0.99501 0.94951 1.69964 1.04428 1.28463
1.50464 0.86453 0.79868 0.83607 0.77625 1.19553 1.20929 1.20924
1.21105 1.01977 0.88821 0.95921 1.16755 0.85863 0.82923 1.10423
1.91514 1.76552 1.48406 1.94411 0.87818 0.92092 0.92097 0.83771
0.84142 0.76854 0.92244 0.92252 0.95874 0.95875 0.92886 0.82599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.13 9.81 101.05 0.99 1.12 16
2 O -0.31 -3.14 10.35 -19.01 -0.20 -3.34 16
3 C 0.11 1.27 6.70 -38.98 -0.26 1.01 16
4 C -0.19 -1.76 9.01 -39.51 -0.36 -2.12 16
5 C -0.05 -0.57 9.53 -39.21 -0.37 -0.94 16
6 C -0.14 -1.84 5.87 -104.96 -0.62 -2.45 16
7 C 0.55 9.40 7.76 -12.44 -0.10 9.30 16
8 O -0.54 -11.19 16.34 5.29 0.09 -11.10 16
9 N -0.71 -12.12 5.51 -61.33 -0.34 -12.46 16
10 C 0.12 2.51 5.61 -4.04 -0.02 2.48 16
11 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16
12 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16
13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16
14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16
16 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16
17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
20 C -0.06 -0.77 9.56 -39.15 -0.37 -1.14 16
21 C 0.06 0.76 7.30 -39.36 -0.29 0.47 16
22 F -0.13 -1.74 17.10 2.25 0.04 -1.70 16
23 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16
24 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16
25 H 0.06 0.27 7.64 -51.93 -0.40 -0.12 16
26 H 0.14 0.90 6.27 -52.49 -0.33 0.57 16
27 H 0.14 1.22 6.39 -52.49 -0.34 0.89 16
28 H 0.40 5.64 6.49 -40.82 -0.27 5.38 16
29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16
33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
34 H 0.16 2.05 7.64 -52.49 -0.40 1.65 16
LS Contribution 303.13 15.07 4.57 4.57
Total: -1.00 -32.24 303.13 -5.86 -38.10
By element:
Atomic # 1 Polarization: 3.68 SS G_CDS: -3.78 Total: -0.10 kcal
Atomic # 6 Polarization: -3.17 SS G_CDS: -1.95 Total: -5.12 kcal
Atomic # 7 Polarization: -37.79 SS G_CDS: 0.40 Total: -37.39 kcal
Atomic # 8 Polarization: -14.33 SS G_CDS: -0.11 Total: -14.44 kcal
Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -32.24 -5.86 -38.10 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000061669024.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.349 kcal
(2) G-P(sol) polarization free energy of solvation -32.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds