Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47056 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00042 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00357 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99643 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00337 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46993 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46929 * 120.00330 * 16 14 12 19 19 H 1.48497 * 109.47095 * 239.99902 * 16 14 12 20 20 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 21 21 C 1.37891 * 119.88633 * 0.02562 * 20 6 5 22 22 F 1.35099 * 119.98055 * 180.02562 * 21 20 6 23 23 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 27 27 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 28 28 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 29 29 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 30 30 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 31 31 H 1.08997 * 109.47472 * 299.99535 * 11 10 9 32 32 H 1.09002 * 109.47306 * 60.00401 * 11 10 9 33 33 H 0.97006 * 119.99934 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.05353 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 3.5273 9.8829 -0.0453 13 1 4.6058 9.9407 -0.0453 14 6 2.7750 11.0383 -0.0525 15 7 1.4617 10.9679 -0.0530 16 14 3.6211 12.7038 -0.0616 17 1 5.0935 12.5109 -0.0601 18 1 3.2219 13.4551 -1.2788 19 1 3.2203 13.4691 1.1461 20 6 4.0640 2.5078 -0.0062 21 6 3.4352 1.2806 -0.0005 22 9 4.1689 0.1462 0.0056 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2087 2.3146 -0.0062 27 1 1.3171 4.5071 -0.0156 28 1 2.2677 6.0734 -0.0252 29 1 4.5224 7.5274 0.8575 30 1 4.5226 7.5177 -0.9223 31 1 2.2224 8.4432 -0.9283 32 1 2.2218 8.4532 0.8517 33 1 0.9324 11.7808 -0.0585 34 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061669024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = -102.447768 kcal Electronic energy + Delta-G solvation = -19077.506725 eV Core-core repulsion = 15697.067177 eV Total energy + Delta-G solvation = -3380.439548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.95777 -40.50457 -39.34289 -37.21211 -34.98442 -32.94835 -31.10359 -30.90693 -29.41925 -27.75626 -25.04345 -23.45653 -22.88432 -21.09824 -20.37265 -18.79414 -17.73826 -17.18526 -16.48256 -16.39855 -16.10211 -15.33369 -15.13413 -15.03728 -14.93012 -14.54874 -14.49965 -13.57776 -13.24532 -13.15454 -12.84337 -12.51849 -12.32575 -12.16746 -11.48119 -11.42876 -11.21911 -11.07218 -10.65621 -10.38901 -9.93173 -9.55857 -9.26743 -9.26104 -8.68981 -8.49823 -8.35447 -6.12866 -4.15561 0.59403 0.85857 2.73118 2.77781 3.26571 3.34104 3.38408 3.48671 3.69239 3.95350 4.34340 4.39046 4.59987 4.75743 4.76919 4.81211 4.89426 5.08531 5.24296 5.24614 5.53650 5.66606 5.81368 5.97507 6.25450 6.30054 6.31790 6.68435 6.81159 6.87426 7.46913 7.56592 7.85166 7.90505 8.23373 8.52586 8.90515 9.49624 10.98780 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.003252 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.795763 B = 8608.765235 C = 9315.811192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.115 3.885 4 C -0.190 4.190 5 C -0.054 4.054 6 C -0.136 4.136 7 C 0.552 3.448 8 O -0.544 6.544 9 N -0.714 5.714 10 C 0.121 3.879 11 C 0.011 3.989 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.059 4.059 21 C 0.060 3.940 22 F -0.130 7.130 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.397 0.603 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -20.276 0.106 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.068 3.932 4 C -0.208 4.208 5 C -0.072 4.072 6 C -0.140 4.140 7 C 0.338 3.662 8 O -0.424 6.424 9 N -0.364 5.364 10 C -0.001 4.001 11 C -0.026 4.026 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.078 4.078 21 C 0.040 3.960 22 F -0.109 7.109 23 H 0.122 0.878 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.231 0.769 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.029 -20.314 0.105 20.710 hybrid contribution -0.371 0.874 -0.005 0.950 sum -4.400 -19.440 0.101 19.932 Atomic orbital electron populations 1.23182 0.77552 1.04476 1.01877 1.86105 1.22064 1.25800 1.88091 1.19236 0.90809 0.85701 0.97483 1.21079 1.00592 0.91055 1.08095 1.21269 0.93432 0.97950 0.94599 1.19859 0.93373 0.93811 1.06925 1.18008 0.87033 0.83807 0.77388 1.90768 1.13451 1.87486 1.50651 1.46255 1.10281 1.06701 1.73198 1.21791 0.97214 0.79998 1.01106 1.19343 0.93629 0.91727 0.97893 1.21085 0.93338 0.90302 1.51250 0.92134 1.24997 0.94850 0.99501 0.94951 1.69964 1.04428 1.28463 1.50464 0.86453 0.79868 0.83607 0.77625 1.19553 1.20929 1.20924 1.21105 1.01977 0.88821 0.95921 1.16755 0.85863 0.82923 1.10423 1.91514 1.76552 1.48406 1.94411 0.87818 0.92092 0.92097 0.83771 0.84142 0.76854 0.92244 0.92252 0.95874 0.95875 0.92886 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.14 10.35 -19.01 -0.20 -3.34 16 3 C 0.11 1.27 6.70 -38.98 -0.26 1.01 16 4 C -0.19 -1.76 9.01 -39.51 -0.36 -2.12 16 5 C -0.05 -0.57 9.53 -39.21 -0.37 -0.94 16 6 C -0.14 -1.84 5.87 -104.96 -0.62 -2.45 16 7 C 0.55 9.40 7.76 -12.44 -0.10 9.30 16 8 O -0.54 -11.19 16.34 5.29 0.09 -11.10 16 9 N -0.71 -12.12 5.51 -61.33 -0.34 -12.46 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.48 16 11 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 12 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 16 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.06 -0.77 9.56 -39.15 -0.37 -1.14 16 21 C 0.06 0.76 7.30 -39.36 -0.29 0.47 16 22 F -0.13 -1.74 17.10 2.25 0.04 -1.70 16 23 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 25 H 0.06 0.27 7.64 -51.93 -0.40 -0.12 16 26 H 0.14 0.90 6.27 -52.49 -0.33 0.57 16 27 H 0.14 1.22 6.39 -52.49 -0.34 0.89 16 28 H 0.40 5.64 6.49 -40.82 -0.27 5.38 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.16 2.05 7.64 -52.49 -0.40 1.65 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -32.24 303.13 -5.86 -38.10 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.78 Total: -0.10 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.95 Total: -5.12 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.40 Total: -37.39 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.11 Total: -14.44 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.24 -5.86 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061669024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.349 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds