Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47056 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00042 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00357 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99643 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00337 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46993 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46929 * 120.00330 * 16 14 12 19 19 H 1.48497 * 109.47095 * 239.99902 * 16 14 12 20 20 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 21 21 C 1.37891 * 119.88633 * 0.02562 * 20 6 5 22 22 F 1.35099 * 119.98055 * 180.02562 * 21 20 6 23 23 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 25 25 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 26 26 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 27 27 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 28 28 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 29 29 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 30 30 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 31 31 H 1.08997 * 109.47472 * 299.99535 * 11 10 9 32 32 H 1.09002 * 109.47306 * 60.00401 * 11 10 9 33 33 H 0.97006 * 119.99934 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.05353 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 3.5273 9.8829 -0.0453 13 1 4.6058 9.9407 -0.0453 14 6 2.7750 11.0383 -0.0525 15 7 1.4617 10.9679 -0.0530 16 14 3.6211 12.7038 -0.0616 17 1 5.0935 12.5109 -0.0601 18 1 3.2219 13.4551 -1.2788 19 1 3.2203 13.4691 1.1461 20 6 4.0640 2.5078 -0.0062 21 6 3.4352 1.2806 -0.0005 22 9 4.1689 0.1462 0.0056 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2087 2.3146 -0.0062 27 1 1.3171 4.5071 -0.0156 28 1 2.2677 6.0734 -0.0252 29 1 4.5224 7.5274 0.8575 30 1 4.5226 7.5177 -0.9223 31 1 2.2224 8.4432 -0.9283 32 1 2.2218 8.4532 0.8517 33 1 0.9324 11.7808 -0.0585 34 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061669024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = -123.962662 kcal Electronic energy + Delta-G solvation = -19078.439681 eV Core-core repulsion = 15697.067177 eV Total energy + Delta-G solvation = -3381.372504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93989 -41.47600 -40.48283 -38.18588 -36.65066 -34.86733 -32.32568 -31.88153 -30.87215 -28.43921 -26.78283 -24.62522 -23.83175 -22.82379 -21.65745 -19.70637 -18.87439 -18.42872 -18.04334 -17.27727 -17.19702 -16.56920 -16.47372 -16.44563 -16.11284 -15.84719 -15.31598 -14.94851 -14.89600 -14.30199 -14.08051 -13.72985 -13.34878 -13.20383 -12.94687 -12.88011 -12.52248 -12.27315 -12.20539 -12.10482 -11.68601 -11.44713 -11.02579 -10.59674 -10.17194 -10.09232 -9.37979 -8.23230 -6.32768 -0.37851 -0.02462 1.41867 1.43559 1.56019 1.66278 2.02535 2.15261 2.44344 2.59168 3.07272 3.12007 3.55603 3.63634 3.81748 3.97108 4.32555 4.36554 4.42479 4.45701 4.50509 4.70029 4.75346 4.84493 4.86868 4.95941 5.07290 5.24103 5.39220 5.49606 5.60203 5.79871 6.14425 6.17482 6.55596 6.80269 7.17513 7.36440 8.88669 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.003252 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.795763 B = 8608.765235 C = 9315.811192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.125 3.875 4 C -0.176 4.176 5 C -0.040 4.040 6 C -0.156 4.156 7 C 0.554 3.446 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.139 3.861 11 C 0.022 3.978 12 C -0.546 4.546 13 H 0.058 0.942 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.063 4.063 21 C 0.040 3.960 22 F -0.140 7.140 23 H 0.122 0.878 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.184 0.816 27 H 0.163 0.837 28 H 0.412 0.588 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -20.738 0.108 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.077 3.923 4 C -0.194 4.194 5 C -0.059 4.059 6 C -0.159 4.159 7 C 0.342 3.658 8 O -0.469 6.469 9 N -0.358 5.358 10 C 0.016 3.984 11 C -0.015 4.015 12 C -0.584 4.584 13 H 0.076 0.924 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.787 3.213 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.083 4.083 21 C 0.020 3.980 22 F -0.119 7.119 23 H 0.140 0.860 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.201 0.799 27 H 0.181 0.819 28 H 0.249 0.751 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.848 -20.802 0.107 21.609 hybrid contribution 0.080 0.885 -0.005 0.888 sum -5.768 -19.917 0.102 20.736 Atomic orbital electron populations 1.23582 0.74940 1.06379 1.03393 1.86107 1.24748 1.25403 1.87513 1.19361 0.90277 0.86823 0.95807 1.21429 1.02305 0.89511 1.06182 1.21508 0.92052 0.99563 0.92773 1.19524 0.94640 0.91562 1.10190 1.18482 0.86553 0.84792 0.75929 1.90741 1.15412 1.88165 1.52561 1.45995 1.11022 1.05465 1.73351 1.21297 0.96035 0.80967 1.00124 1.19151 0.93815 0.91885 0.96681 1.21494 0.93543 0.92015 1.51384 0.92423 1.25822 0.95513 1.03200 0.94479 1.70051 1.05648 1.29646 1.51082 0.85432 0.78901 0.79058 0.77869 1.19124 1.20269 1.20258 1.20999 1.01611 0.89307 0.96345 1.16866 0.86856 0.82337 1.11939 1.91481 1.76993 1.48749 1.94653 0.86008 0.90494 0.90497 0.79855 0.81943 0.75084 0.93287 0.93296 0.96929 0.96932 0.92545 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.78 10.35 -90.94 -0.94 -6.72 16 3 C 0.13 2.48 6.70 22.66 0.15 2.63 16 4 C -0.18 -2.63 9.01 22.32 0.20 -2.43 16 5 C -0.04 -0.75 9.53 22.51 0.21 -0.53 16 6 C -0.16 -4.11 5.87 -20.08 -0.12 -4.22 16 7 C 0.55 19.00 7.76 86.71 0.67 19.67 16 8 O -0.59 -24.87 16.34 -3.99 -0.07 -24.93 16 9 N -0.71 -23.80 5.51 -466.21 -2.57 -26.37 16 10 C 0.14 5.85 5.61 86.38 0.48 6.33 16 11 C 0.02 1.08 5.09 29.85 0.15 1.23 16 12 C -0.55 -29.93 9.11 25.60 0.23 -29.69 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 16 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.06 -1.67 9.56 22.55 0.22 -1.46 16 21 C 0.04 0.98 7.30 22.41 0.16 1.15 16 22 F -0.14 -3.77 17.10 44.97 0.77 -3.00 16 23 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.08 0.35 7.66 -2.39 -0.02 0.33 16 25 H 0.08 0.35 7.64 -2.38 -0.02 0.33 16 26 H 0.18 1.30 6.27 -2.91 -0.02 1.28 16 27 H 0.16 2.26 6.39 -2.91 -0.02 2.25 16 28 H 0.41 11.19 6.49 -92.71 -0.60 10.59 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 34 H 0.14 4.05 7.64 -2.91 -0.02 4.03 16 Total: -1.00 -70.07 303.13 3.99 -66.09 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.53 Total: 7.72 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 3.95 Total: -5.19 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -2.28 Total: -78.99 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.01 Total: -31.66 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.77 Total: -3.00 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.07 3.99 -66.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061669024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.875 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds