Wall clock time and date at job start Mon Mar 30 2020 00:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46832 * 2 1 4 4 C 1.50698 * 109.47478 * 120.00249 * 2 1 3 5 5 H 1.07993 * 120.00183 * 119.99847 * 4 2 1 6 6 C 1.37875 * 119.99605 * 300.00446 * 4 2 1 7 7 N 1.31521 * 120.00148 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00404 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46876 * 90.00108 * 8 6 4 10 10 H 1.48495 * 109.47485 * 210.00570 * 8 6 4 11 11 H 1.48501 * 109.46870 * 330.00639 * 8 6 4 12 12 N 1.46504 * 109.47280 * 240.00146 * 2 1 3 13 13 C 1.34777 * 119.99646 * 84.99627 * 12 2 1 14 14 O 1.21276 * 120.00320 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99499 * 180.02562 * 13 12 2 16 16 O 1.42906 * 109.47037 * 180.02562 * 15 13 12 17 17 C 1.35948 * 117.00016 * 180.02562 * 16 15 13 18 18 C 1.38659 * 120.06296 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.96723 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.10006 * 359.97438 * 19 18 17 21 21 C 1.38255 * 120.12507 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.03035 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.05046 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47310 * 299.99526 * 1 2 3 25 25 H 1.09006 * 109.47064 * 60.00033 * 1 2 3 26 26 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00243 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99848 * 265.00103 * 12 2 1 29 29 H 1.08994 * 109.47324 * 60.00587 * 15 13 12 30 30 H 1.08998 * 109.47294 * 300.00127 * 15 13 12 31 31 H 1.07992 * 120.01857 * 0.02562 * 18 17 16 32 32 H 1.08007 * 119.94945 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.94370 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.98956 * 179.72600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 2.1381 -0.8591 3.5565 8 14 0.6257 1.2797 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8489 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8589 1.1586 -2.4115 15 6 2.6489 -0.7287 -3.5878 16 8 2.6975 0.1897 -4.6815 17 6 3.1313 -0.2948 -5.8754 18 6 3.5026 -1.6257 -5.9914 19 6 3.9437 -2.1159 -7.2057 20 6 4.0150 -1.2814 -8.3057 21 6 3.6457 0.0463 -8.1946 22 6 3.2033 0.5426 -6.9814 23 9 2.8429 1.8400 -6.8722 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9034 -0.5280 4.4375 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5504 -3.8327 30 1 3.6480 -1.1212 -3.3987 31 1 3.4472 -2.2788 -5.1332 32 1 4.2325 -3.1527 -7.2959 33 1 4.3597 -1.6673 -9.2537 34 1 3.7064 0.6973 -9.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:10 Heat of formation + Delta-G solvation = -86.309372 kcal Electronic energy + Delta-G solvation = -19473.030023 eV Core-core repulsion = 16093.290289 eV Total energy + Delta-G solvation = -3379.739734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.83568 -40.34114 -38.98226 -37.40942 -35.04567 -32.50218 -30.99520 -30.78795 -29.96574 -27.74484 -25.22741 -23.23944 -22.67030 -21.28260 -19.77277 -18.69219 -17.61455 -17.18772 -16.62353 -16.52665 -15.88014 -15.60463 -15.40752 -15.06890 -14.62939 -14.42824 -13.92364 -13.55836 -13.04929 -12.99804 -12.74143 -12.46394 -12.24114 -11.94725 -11.86526 -11.45623 -11.38685 -11.15358 -10.85134 -10.23008 -9.74945 -9.29427 -9.25765 -9.21506 -8.80992 -8.41273 -8.27436 -6.25316 -4.28663 0.86000 1.00842 2.63342 3.02202 3.21464 3.32281 3.33950 3.38709 3.89647 4.11063 4.28467 4.48020 4.55916 4.78911 4.94800 4.99900 5.03830 5.10146 5.12519 5.26864 5.70349 5.78123 5.90416 6.09703 6.25893 6.32076 6.38295 6.50211 6.80001 7.02981 7.15405 7.19655 7.44132 8.05142 8.41417 8.68383 8.79411 9.34891 10.86626 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041989 B = 0.003713 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.679053 B = 7539.506648 C = 7999.787878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.238 3.762 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.696 5.696 13 C 0.505 3.495 14 O -0.530 6.530 15 C 0.038 3.962 16 O -0.280 6.280 17 C 0.102 3.898 18 C -0.186 4.186 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.117 4.117 22 C 0.069 3.931 23 F -0.130 7.130 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.268 0.732 28 H 0.397 0.603 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -4.626 -21.478 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.347 5.347 13 C 0.288 3.712 14 O -0.407 6.407 15 C -0.040 4.040 16 O -0.191 6.191 17 C 0.055 3.945 18 C -0.205 4.205 19 C -0.107 4.107 20 C -0.153 4.153 21 C -0.136 4.136 22 C 0.049 3.951 23 F -0.108 7.108 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.230 0.770 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.718 -3.514 -21.214 21.674 hybrid contribution -0.493 0.185 0.390 0.655 sum 2.225 -3.329 -20.823 21.205 Atomic orbital electron populations 1.22464 0.99126 1.00975 0.99507 1.19154 0.90255 0.94751 0.82295 0.93179 1.21005 1.33507 1.14547 0.88447 0.90097 1.24823 0.95451 0.96708 0.95481 1.69862 1.44734 1.40107 0.98083 0.86881 0.80522 0.83576 0.77583 1.20223 1.22049 1.18593 1.46059 1.65469 1.13907 1.09230 1.19849 0.79531 0.87695 0.84142 1.90723 1.49682 1.15620 1.84647 1.22685 1.02997 0.92501 0.85839 1.86262 1.80263 1.37216 1.15384 1.19165 0.96917 0.92658 0.85801 1.21249 1.05316 0.93730 1.00189 1.21025 0.97658 1.00172 0.91880 1.20917 1.02199 0.92753 0.99406 1.21030 0.99974 0.96974 0.95640 1.17041 1.05998 0.79075 0.92945 1.91531 1.89595 1.33082 1.96608 0.93284 0.94443 0.92695 0.92196 0.76987 0.89035 0.88909 0.84228 0.84986 0.84918 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 3 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -14.26 9.31 -34.44 -0.32 -14.58 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 8 Si 0.88 21.64 24.37 -169.99 -4.14 17.50 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 N -0.70 -13.29 5.07 -54.93 -0.28 -13.57 16 13 C 0.50 9.53 7.87 -10.98 -0.09 9.44 16 14 O -0.53 -12.57 16.16 -14.35 -0.23 -12.80 16 15 C 0.04 0.52 5.22 36.01 0.19 0.71 16 16 O -0.28 -4.53 9.53 -39.48 -0.38 -4.90 16 17 C 0.10 1.34 6.69 -39.18 -0.26 1.08 16 18 C -0.19 -1.81 9.04 -39.45 -0.36 -2.17 16 19 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 20 C -0.13 -1.03 10.04 -39.57 -0.40 -1.42 16 21 C -0.12 -1.10 10.02 -39.54 -0.40 -1.50 16 22 C 0.07 0.90 7.31 -39.29 -0.29 0.61 16 23 F -0.13 -1.99 17.11 2.25 0.04 -1.95 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.40 6.29 8.54 -40.82 -0.35 5.94 16 29 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 30 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 31 H 0.14 1.07 6.30 -52.49 -0.33 0.73 16 32 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -33.68 295.64 -5.69 -39.37 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.70 Total: 1.82 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.23 Total: -4.62 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.50 Total: -38.88 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.61 Total: -17.71 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.68 -5.69 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.935 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds