Wall clock time and date at job start Mon Mar 30 2020 00:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46832 * 2 1 4 4 C 1.50698 * 109.47478 * 120.00249 * 2 1 3 5 5 H 1.07993 * 120.00183 * 119.99847 * 4 2 1 6 6 C 1.37875 * 119.99605 * 300.00446 * 4 2 1 7 7 N 1.31521 * 120.00148 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00404 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46876 * 90.00108 * 8 6 4 10 10 H 1.48495 * 109.47485 * 210.00570 * 8 6 4 11 11 H 1.48501 * 109.46870 * 330.00639 * 8 6 4 12 12 N 1.46504 * 109.47280 * 240.00146 * 2 1 3 13 13 C 1.34777 * 119.99646 * 84.99627 * 12 2 1 14 14 O 1.21276 * 120.00320 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99499 * 180.02562 * 13 12 2 16 16 O 1.42906 * 109.47037 * 180.02562 * 15 13 12 17 17 C 1.35948 * 117.00016 * 180.02562 * 16 15 13 18 18 C 1.38659 * 120.06296 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.96723 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.10006 * 359.97438 * 19 18 17 21 21 C 1.38255 * 120.12507 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.03035 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.05046 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47310 * 299.99526 * 1 2 3 25 25 H 1.09006 * 109.47064 * 60.00033 * 1 2 3 26 26 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00243 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99848 * 265.00103 * 12 2 1 29 29 H 1.08994 * 109.47324 * 60.00587 * 15 13 12 30 30 H 1.08998 * 109.47294 * 300.00127 * 15 13 12 31 31 H 1.07992 * 120.01857 * 0.02562 * 18 17 16 32 32 H 1.08007 * 119.94945 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.94370 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.98956 * 179.72600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 2.1381 -0.8591 3.5565 8 14 0.6257 1.2797 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8489 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8589 1.1586 -2.4115 15 6 2.6489 -0.7287 -3.5878 16 8 2.6975 0.1897 -4.6815 17 6 3.1313 -0.2948 -5.8754 18 6 3.5026 -1.6257 -5.9914 19 6 3.9437 -2.1159 -7.2057 20 6 4.0150 -1.2814 -8.3057 21 6 3.6457 0.0463 -8.1946 22 6 3.2033 0.5426 -6.9814 23 9 2.8429 1.8400 -6.8722 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9034 -0.5280 4.4375 28 1 2.2491 -1.6317 -1.1526 29 1 1.9760 -1.5504 -3.8327 30 1 3.6480 -1.1212 -3.3987 31 1 3.4472 -2.2788 -5.1332 32 1 4.2325 -3.1527 -7.2959 33 1 4.3597 -1.6673 -9.2537 34 1 3.7064 0.6973 -9.0541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:10 Heat of formation + Delta-G solvation = -110.164980 kcal Electronic energy + Delta-G solvation = -19474.064480 eV Core-core repulsion = 16093.290289 eV Total energy + Delta-G solvation = -3380.774191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83501 -41.39165 -40.32561 -38.34748 -36.84730 -34.47138 -32.36077 -31.64754 -31.04656 -28.90061 -27.23622 -24.21041 -23.48098 -22.82010 -21.40033 -19.65316 -19.19018 -18.19313 -17.92097 -17.59691 -17.32064 -17.17668 -16.50599 -16.20576 -15.76408 -15.43447 -15.35109 -15.02425 -14.85376 -14.16972 -14.12382 -13.73166 -13.66861 -13.39888 -13.14166 -12.81607 -12.65444 -12.18658 -12.13564 -12.12886 -11.64628 -11.31463 -10.91014 -10.85049 -9.99706 -9.92964 -9.24352 -8.40060 -6.45913 0.14368 0.27018 1.25852 1.35031 1.43846 1.54140 1.56733 2.24580 2.62599 2.68274 2.96263 3.27600 3.60444 3.81822 3.95409 4.03645 4.08879 4.30490 4.35872 4.42354 4.50495 4.55304 4.67127 4.96464 5.00422 5.11103 5.27796 5.28061 5.38142 5.44495 5.54824 5.69180 6.09059 6.23961 6.55264 6.75773 7.15818 7.34040 8.74787 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041989 B = 0.003713 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.679053 B = 7539.506648 C = 7999.787878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.020 0.980 4 C -0.532 4.532 5 H 0.064 0.936 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.934 3.066 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.267 1.267 12 N -0.690 5.690 13 C 0.501 3.499 14 O -0.586 6.586 15 C 0.049 3.951 16 O -0.322 6.322 17 C 0.071 3.929 18 C -0.185 4.185 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.026 3.974 23 F -0.157 7.157 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.271 0.729 28 H 0.414 0.586 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -6.751 -23.706 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.038 0.962 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.762 3.238 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.192 1.192 12 N -0.341 5.341 13 C 0.287 3.713 14 O -0.466 6.466 15 C -0.028 4.028 16 O -0.235 6.235 17 C 0.025 3.975 18 C -0.203 4.203 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.135 4.135 22 C 0.006 3.994 23 F -0.136 7.136 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.251 0.749 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.949 -5.688 -23.468 24.327 hybrid contribution -0.458 0.750 0.952 1.295 sum 2.491 -4.938 -22.516 23.185 Atomic orbital electron populations 1.22358 0.97680 1.02036 0.99394 1.18801 0.91338 0.93168 0.83004 0.96235 1.21218 1.32495 1.13754 0.89586 0.91791 1.25493 0.96765 0.99093 0.95436 1.69957 1.46493 1.41823 0.98655 0.86074 0.80032 0.80575 0.77110 1.18366 1.21913 1.19210 1.45809 1.65324 1.14627 1.08362 1.20766 0.78068 0.87125 0.85305 1.90695 1.51991 1.18282 1.85640 1.22666 1.05354 0.91811 0.83016 1.86174 1.81516 1.39030 1.16823 1.19473 0.98984 0.94324 0.84704 1.21582 1.04426 0.92304 1.02001 1.21531 0.95633 1.01855 0.90845 1.21418 1.00133 0.91628 1.00988 1.21351 0.99047 0.98315 0.94788 1.17670 1.08540 0.78435 0.94748 1.91448 1.90258 1.34994 1.96869 0.94055 0.93858 0.90999 0.91972 0.74923 0.85123 0.85641 0.81940 0.81300 0.81298 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.78 8.96 71.98 0.65 -6.13 16 2 C 0.24 11.37 2.15 44.24 0.10 11.46 16 3 H 0.02 1.05 6.63 -2.39 -0.02 1.04 16 4 C -0.53 -28.36 9.31 25.60 0.24 -28.12 16 5 H 0.06 3.55 7.98 -2.91 -0.02 3.53 16 6 C 0.03 1.80 5.45 84.65 0.46 2.26 16 7 N -0.93 -54.94 13.96 21.45 0.30 -54.64 16 8 Si 0.93 44.69 24.37 68.60 1.67 46.36 16 9 H -0.26 -11.55 6.87 99.48 0.68 -10.86 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.27 -12.94 6.53 99.48 0.65 -12.29 16 12 N -0.69 -25.75 5.07 -446.09 -2.26 -28.02 16 13 C 0.50 18.70 7.87 87.66 0.69 19.39 16 14 O -0.59 -28.47 16.16 16.02 0.26 -28.21 16 15 C 0.05 1.24 5.22 71.24 0.37 1.61 16 16 O -0.32 -10.41 9.53 -73.93 -0.70 -11.11 16 17 C 0.07 1.82 6.69 22.53 0.15 1.97 16 18 C -0.18 -2.99 9.04 22.36 0.20 -2.79 16 19 C -0.08 -0.89 10.04 22.26 0.22 -0.66 16 20 C -0.12 -1.38 10.04 22.28 0.22 -1.15 16 21 C -0.12 -1.98 10.02 22.30 0.22 -1.75 16 22 C 0.03 0.67 7.31 22.46 0.16 0.83 16 23 F -0.16 -5.10 17.11 44.97 0.77 -4.33 16 24 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 25 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.41 12.43 8.54 -92.71 -0.79 11.64 16 29 H 0.13 2.23 7.66 -2.39 -0.02 2.21 16 30 H 0.13 2.30 7.66 -2.39 -0.02 2.29 16 31 H 0.16 1.74 6.30 -2.91 -0.02 1.73 16 32 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -76.94 295.64 3.99 -72.95 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.27 Total: 10.10 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 3.69 Total: -3.10 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.96 Total: -82.66 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.45 Total: -39.32 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.77 Total: -4.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.67 Total: 46.36 kcal Total: -76.94 3.99 -72.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.215 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds