Wall clock time and date at job start Mon Mar 30 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46619 * 179.97438 * 15 13 12 17 17 C 1.35947 * 116.99665 * 179.97438 * 16 15 13 18 18 C 1.38702 * 120.03377 * 359.72706 * 17 16 15 19 19 C 1.38152 * 119.97326 * 179.78740 * 18 17 16 20 20 C 1.38454 * 120.02580 * 0.48709 * 19 18 17 21 21 F 1.35106 * 119.96535 * 179.72430 * 20 19 18 22 22 C 1.38447 * 120.06474 * 359.74237 * 20 19 18 23 23 C 1.38156 * 120.03112 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 25 25 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 26 26 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 27 27 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 28 28 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 29 29 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 30 30 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 31 31 H 1.08004 * 120.00865 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.98551 * 180.20762 * 19 18 17 33 33 H 1.07994 * 119.98854 * 180.02562 * 22 20 19 34 34 H 1.08001 * 120.01852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 8 2.6966 0.1892 -4.6817 17 6 3.1313 -0.2951 -5.8753 18 6 3.5094 -1.6248 -5.9888 19 6 3.9467 -2.1168 -7.2034 20 6 4.0174 -1.2806 -8.3046 21 9 4.4505 -1.7616 -9.4905 22 6 3.6448 0.0480 -8.1917 23 6 3.2025 0.5415 -6.9794 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9088 26 1 -0.3633 0.5473 -0.8698 27 1 0.9967 1.3391 3.4805 28 1 2.2491 -1.6318 -1.1525 29 1 3.6482 -1.1214 -3.3984 30 1 1.9761 -1.5507 -3.8325 31 1 3.4589 -2.2760 -5.1286 32 1 4.2380 -3.1529 -7.2928 33 1 3.7000 0.6991 -9.0516 34 1 2.9124 1.5781 -6.8915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:13 Heat of formation + Delta-G solvation = -97.806538 kcal Electronic energy + Delta-G solvation = -19121.896920 eV Core-core repulsion = 15741.658631 eV Total energy + Delta-G solvation = -3380.238289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.00227 -40.36582 -38.83028 -37.13132 -34.83209 -32.49536 -31.54001 -30.24612 -29.29739 -27.37568 -25.28724 -23.42148 -22.49039 -21.21712 -19.61532 -18.54439 -17.62191 -17.48548 -16.48505 -16.29637 -15.67554 -15.59194 -15.31492 -14.87123 -14.47089 -13.99121 -13.88332 -13.67257 -13.18303 -13.01138 -12.51737 -12.42855 -12.29622 -11.82675 -11.15263 -11.12910 -11.08184 -10.94660 -10.80712 -10.40603 -10.32958 -9.43986 -9.18960 -9.12975 -8.58234 -8.28747 -8.06445 -6.19844 -4.27052 0.91090 1.00390 2.78138 3.16462 3.20977 3.28543 3.30157 3.35191 4.05274 4.13281 4.32439 4.45624 4.54231 4.81235 4.95844 5.10819 5.11696 5.14786 5.25864 5.39676 5.63232 5.86549 5.92237 6.01114 6.46082 6.70623 6.83506 7.01918 7.15779 7.31776 7.46981 7.60595 7.78852 8.00135 8.51604 8.70519 8.96800 9.39387 10.88299 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.048127 B = 0.003130 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.651654 B = 8944.740848 C = 9319.914147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.531 6.531 15 C 0.037 3.963 16 O -0.282 6.282 17 C 0.128 3.872 18 C -0.185 4.185 19 C -0.111 4.111 20 C 0.051 3.949 21 F -0.144 7.144 22 C -0.112 4.112 23 C -0.123 4.123 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.019 0.981 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 -6.803 -17.265 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.407 6.407 15 C -0.042 4.042 16 O -0.194 6.194 17 C 0.081 3.919 18 C -0.204 4.204 19 C -0.130 4.130 20 C 0.031 3.969 21 F -0.123 7.123 22 C -0.131 4.131 23 C -0.141 4.141 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.071 -5.610 -17.112 18.462 hybrid contribution 0.437 -1.372 0.747 1.622 sum 4.507 -6.982 -16.364 18.354 Atomic orbital electron populations 1.22033 0.98577 0.98878 1.00799 1.18805 0.90797 0.94460 0.79575 0.92705 1.21174 1.35712 1.10528 0.90228 0.91937 1.24896 0.94892 0.94708 0.99081 1.69965 1.41833 1.15785 1.24167 0.86452 0.78656 0.79802 0.82303 1.20518 1.19793 1.21068 1.46419 1.65353 1.13638 1.09969 1.19825 0.79744 0.87754 0.84129 1.90716 1.49800 1.15616 1.84611 1.22715 1.02731 0.92598 0.86125 1.86234 1.80131 1.37427 1.15615 1.19170 0.94209 0.92190 0.86286 1.21188 1.05287 0.95024 0.98925 1.20920 1.00341 1.00247 0.91470 1.17569 1.04382 0.93128 0.81780 1.91482 1.87755 1.88575 1.44489 1.20948 0.99761 0.93950 0.98412 1.20341 1.03185 1.00765 0.89851 0.95184 0.90253 0.96178 0.92468 0.77769 0.89241 0.89326 0.84239 0.84498 0.84093 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.32 37.16 0.35 -3.11 16 2 C 0.26 6.54 2.45 -69.08 -0.17 6.37 16 3 H 0.06 1.59 7.57 -51.93 -0.39 1.19 16 4 C -0.54 -13.84 8.69 -34.44 -0.30 -14.14 16 5 H 0.06 1.52 7.73 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 7 N -0.88 -24.58 11.92 55.43 0.66 -23.92 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.70 -13.80 5.07 -54.93 -0.28 -14.07 16 13 C 0.50 9.67 7.87 -10.98 -0.09 9.59 16 14 O -0.53 -12.83 16.16 -14.35 -0.23 -13.06 16 15 C 0.04 0.50 5.22 36.01 0.19 0.69 16 16 O -0.28 -4.30 9.67 -39.49 -0.38 -4.68 16 17 C 0.13 1.58 6.69 -39.23 -0.26 1.32 16 18 C -0.19 -1.88 9.04 -39.44 -0.36 -2.23 16 19 C -0.11 -1.06 10.02 -39.53 -0.40 -1.45 16 20 C 0.05 0.53 7.30 -39.43 -0.29 0.24 16 21 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 22 C -0.11 -1.09 10.02 -39.53 -0.40 -1.48 16 23 C -0.12 -1.35 9.99 -39.44 -0.39 -1.75 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 2.06 6.60 -51.93 -0.34 1.72 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 6.26 8.53 -40.82 -0.35 5.91 16 29 H 0.09 0.96 7.65 -51.93 -0.40 0.57 16 30 H 0.09 0.93 7.68 -51.93 -0.40 0.53 16 31 H 0.14 1.12 6.30 -52.48 -0.33 0.79 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -31.48 303.57 -6.71 -38.19 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.86 Total: 3.62 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.21 Total: -4.25 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.38 Total: -38.00 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.61 Total: -17.74 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.48 -6.71 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.619 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds