Wall clock time and date at job start Mon Mar 30 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46619 * 179.97438 * 15 13 12 17 17 C 1.35947 * 116.99665 * 179.97438 * 16 15 13 18 18 C 1.38702 * 120.03377 * 359.72706 * 17 16 15 19 19 C 1.38152 * 119.97326 * 179.78740 * 18 17 16 20 20 C 1.38454 * 120.02580 * 0.48709 * 19 18 17 21 21 F 1.35106 * 119.96535 * 179.72430 * 20 19 18 22 22 C 1.38447 * 120.06474 * 359.74237 * 20 19 18 23 23 C 1.38156 * 120.03112 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 25 25 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 26 26 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 27 27 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 28 28 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 29 29 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 30 30 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 31 31 H 1.08004 * 120.00865 * 359.97438 * 18 17 16 32 32 H 1.07996 * 119.98551 * 180.20762 * 19 18 17 33 33 H 1.07994 * 119.98854 * 180.02562 * 22 20 19 34 34 H 1.08001 * 120.01852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 8 2.6966 0.1892 -4.6817 17 6 3.1313 -0.2951 -5.8753 18 6 3.5094 -1.6248 -5.9888 19 6 3.9467 -2.1168 -7.2034 20 6 4.0174 -1.2806 -8.3046 21 9 4.4505 -1.7616 -9.4905 22 6 3.6448 0.0480 -8.1917 23 6 3.2025 0.5415 -6.9794 24 1 -0.3634 -1.0269 -0.0392 25 1 -0.3633 0.4796 0.9088 26 1 -0.3633 0.5473 -0.8698 27 1 0.9967 1.3391 3.4805 28 1 2.2491 -1.6318 -1.1525 29 1 3.6482 -1.1214 -3.3984 30 1 1.9761 -1.5507 -3.8325 31 1 3.4589 -2.2760 -5.1286 32 1 4.2380 -3.1529 -7.2928 33 1 3.7000 0.6991 -9.0516 34 1 2.9124 1.5781 -6.8915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:13 Heat of formation + Delta-G solvation = -117.907828 kcal Electronic energy + Delta-G solvation = -19122.768578 eV Core-core repulsion = 15741.658631 eV Total energy + Delta-G solvation = -3381.109946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.80777 -41.38839 -40.26045 -38.12592 -36.66947 -34.36906 -32.34582 -31.64185 -30.50096 -28.62372 -27.30456 -24.30621 -23.50794 -22.74111 -21.28467 -19.46245 -19.11018 -18.36379 -17.77375 -17.38080 -17.09703 -17.02388 -16.50268 -16.05720 -15.63811 -15.43244 -15.06698 -14.63963 -14.43657 -14.23359 -13.96528 -13.82110 -13.34890 -13.30164 -12.94967 -12.94128 -12.69213 -12.34690 -12.13546 -11.92237 -11.86930 -11.14709 -10.77038 -10.57705 -10.18330 -9.83299 -9.13848 -8.19981 -6.34835 0.16411 0.19105 1.46398 1.46811 1.57472 1.67728 1.68838 2.41052 2.56442 2.85640 3.12755 3.33188 3.64321 3.82229 3.85617 4.05380 4.15816 4.19231 4.33798 4.58032 4.73062 4.88658 4.91457 5.04090 5.11526 5.14218 5.22467 5.40415 5.57703 5.62501 5.69130 5.86840 6.02777 6.29868 6.73372 6.89257 7.31431 7.49431 8.89019 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.048127 B = 0.003130 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.651654 B = 8944.740848 C = 9319.914147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.547 4.547 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.259 1.259 11 H -0.290 1.290 12 N -0.696 5.696 13 C 0.497 3.503 14 O -0.590 6.590 15 C 0.049 3.951 16 O -0.317 6.317 17 C 0.105 3.895 18 C -0.180 4.180 19 C -0.108 4.108 20 C 0.040 3.960 21 F -0.148 7.148 22 C -0.110 4.110 23 C -0.136 4.136 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.411 0.589 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -9.752 -17.960 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.018 0.982 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.183 1.183 11 H -0.216 1.216 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.471 6.471 15 C -0.028 4.028 16 O -0.230 6.230 17 C 0.060 3.940 18 C -0.198 4.198 19 C -0.127 4.127 20 C 0.021 3.979 21 F -0.127 7.127 22 C -0.128 4.128 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.077 -8.619 -17.840 20.453 hybrid contribution 0.152 -0.420 0.856 0.965 sum 5.228 -9.039 -16.985 19.938 Atomic orbital electron populations 1.21860 0.98269 0.99684 0.99224 1.18379 0.91044 0.92238 0.81728 0.98193 1.21547 1.35509 1.10863 0.90551 0.90249 1.25830 0.94813 0.95498 1.02485 1.70123 1.43280 1.17639 1.24811 0.85335 0.78817 0.78237 0.77964 1.19830 1.18268 1.21605 1.46087 1.65156 1.14491 1.08990 1.20839 0.78240 0.87191 0.85471 1.90690 1.52179 1.18495 1.85688 1.22653 1.05161 0.91847 0.83183 1.86169 1.81178 1.38841 1.16796 1.19396 0.95670 0.93531 0.85420 1.21426 1.04203 0.94203 1.00001 1.21212 0.99339 1.01328 0.90792 1.17812 1.04519 0.93561 0.82000 1.91475 1.87825 1.88609 1.44781 1.21126 0.98928 0.94246 0.98519 1.20485 1.03696 1.00983 0.90269 0.93040 0.92814 0.96676 0.92574 0.75283 0.85737 0.85453 0.81693 0.82021 0.82190 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 9.32 71.98 0.67 -5.75 16 2 C 0.27 13.54 2.45 44.25 0.11 13.65 16 3 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 4 C -0.55 -27.84 8.69 25.60 0.22 -27.62 16 5 H 0.08 3.69 7.73 -2.91 -0.02 3.66 16 6 C 0.01 0.73 5.21 84.65 0.44 1.18 16 7 N -0.92 -52.68 11.92 21.45 0.26 -52.43 16 8 Si 0.97 40.84 29.54 68.60 2.03 42.86 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.70 -26.67 5.07 -446.09 -2.26 -28.93 16 13 C 0.50 18.90 7.87 87.66 0.69 19.59 16 14 O -0.59 -29.54 16.16 16.01 0.26 -29.28 16 15 C 0.05 1.20 5.22 71.24 0.37 1.58 16 16 O -0.32 -9.31 9.67 -73.92 -0.71 -10.03 16 17 C 0.11 2.42 6.69 22.50 0.15 2.57 16 18 C -0.18 -3.05 9.04 22.36 0.20 -2.85 16 19 C -0.11 -1.71 10.02 22.30 0.22 -1.49 16 20 C 0.04 0.74 7.30 22.37 0.16 0.91 16 21 F -0.15 -2.91 17.27 44.97 0.78 -2.13 16 22 C -0.11 -1.96 10.02 22.30 0.22 -1.74 16 23 C -0.14 -2.88 9.99 22.36 0.22 -2.66 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.88 6.60 -2.39 -0.02 2.86 16 26 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.41 12.14 8.53 -92.70 -0.79 11.35 16 29 H 0.13 2.18 7.65 -2.39 -0.02 2.16 16 30 H 0.13 2.14 7.68 -2.39 -0.02 2.12 16 31 H 0.17 1.85 6.30 -2.91 -0.02 1.83 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -71.32 303.57 4.37 -66.95 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.34 Total: 15.62 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 3.69 Total: -2.63 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.01 Total: -81.36 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.46 Total: -39.31 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -71.32 4.37 -66.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.960 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds