Wall clock time and date at job start Mon Mar 30 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47192 * 180.02562 * 15 13 12 17 17 C 1.35899 * 116.99656 * 179.97438 * 16 15 13 18 18 C 1.38764 * 120.04711 * 359.72216 * 17 16 15 19 19 C 1.38137 * 119.99698 * 179.74758 * 18 17 16 20 20 C 1.38254 * 120.07515 * 0.52462 * 19 18 17 21 21 C 1.38472 * 120.08980 * 359.75209 * 20 19 18 22 22 F 1.35096 * 119.99928 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00189 * 359.97058 * 21 20 19 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.08000 * 120.00242 * 0.02562 * 18 17 16 32 32 H 1.07995 * 119.96095 * 180.28062 * 19 18 17 33 33 H 1.08000 * 119.95331 * 179.76959 * 20 19 18 34 34 H 1.07992 * 120.03815 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 8 2.6984 0.1901 -4.6812 17 6 3.1338 -0.2937 -5.8742 18 6 3.5122 -1.6239 -5.9881 19 6 3.9497 -2.1159 -7.2025 20 6 4.0215 -1.2817 -8.3027 21 6 3.6502 0.0476 -8.1914 22 9 3.7216 0.8612 -9.2676 23 6 3.2059 0.5428 -6.9779 24 1 -0.3633 0.4033 0.9453 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 3.4604 -2.2756 -5.1285 32 1 4.2398 -3.1523 -7.2916 33 1 4.3674 -1.6676 -9.2502 34 1 2.9158 1.5793 -6.8906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:16 Heat of formation + Delta-G solvation = -96.844235 kcal Electronic energy + Delta-G solvation = -19228.433160 eV Core-core repulsion = 15848.236599 eV Total energy + Delta-G solvation = -3380.196560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.16626 -40.46105 -38.99199 -37.26779 -35.01692 -32.59625 -31.38373 -30.38464 -29.90643 -27.71668 -24.90594 -23.24811 -22.71312 -21.04314 -19.73996 -18.81214 -18.03277 -16.97777 -16.52187 -16.44637 -16.40809 -15.78759 -15.76488 -15.24211 -14.41498 -14.07671 -13.97962 -13.60025 -13.12464 -12.78226 -12.72359 -12.57314 -12.22301 -12.11143 -11.71901 -11.45175 -11.36810 -11.16068 -10.54307 -10.17476 -9.89096 -9.36593 -9.21829 -9.17564 -8.57267 -8.36697 -8.32227 -6.66497 -4.28092 0.83543 1.00778 2.58951 2.99772 3.30402 3.37374 3.43178 3.58327 3.86907 4.15393 4.39356 4.45746 4.66295 4.72330 4.83102 5.00887 5.03793 5.05780 5.10082 5.18462 5.64896 5.78879 5.92850 6.01500 6.31647 6.41060 6.47945 6.60024 6.87860 7.03916 7.21495 7.28579 7.56116 8.17404 8.30887 8.59857 8.81141 9.37961 10.72208 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045706 B = 0.003379 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.466163 B = 8285.083322 C = 8650.346454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.245 3.755 3 H 0.042 0.958 4 C -0.628 4.628 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.697 5.697 13 C 0.503 3.497 14 O -0.532 6.532 15 C 0.039 3.961 16 O -0.282 6.282 17 C 0.165 3.835 18 C -0.223 4.223 19 C -0.049 4.049 20 C -0.197 4.197 21 C 0.138 3.862 22 F -0.135 7.135 23 C -0.190 4.190 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.271 0.729 28 H 0.395 0.605 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -4.072 -20.323 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.143 3.857 3 H 0.060 0.940 4 C -0.665 4.665 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.520 5.520 8 Si 0.859 3.141 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.347 5.347 13 C 0.286 3.714 14 O -0.409 6.409 15 C -0.040 4.040 16 O -0.193 6.193 17 C 0.118 3.882 18 C -0.242 4.242 19 C -0.067 4.067 20 C -0.216 4.216 21 C 0.119 3.881 22 F -0.114 7.114 23 C -0.209 4.209 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.917 -1.803 -19.166 19.470 hybrid contribution 0.491 -1.896 -1.263 2.331 sum 3.408 -3.699 -20.428 21.038 Atomic orbital electron populations 1.22438 0.98720 1.00060 1.00355 1.19041 0.90638 0.94204 0.81860 0.94002 1.21990 1.42338 1.11271 0.90899 0.91857 1.25641 0.92869 1.05930 0.91668 1.70878 1.42752 1.06476 1.31855 0.84192 0.77864 0.75624 0.76382 1.20751 1.20574 1.19903 1.46185 1.65298 1.13832 1.09386 1.19886 0.79561 0.87740 0.84179 1.90708 1.49935 1.15617 1.84677 1.22693 1.02984 0.92504 0.85830 1.86203 1.79896 1.37556 1.15672 1.18719 0.92229 0.91695 0.85560 1.21399 1.07763 0.94947 1.00068 1.20781 0.95238 0.99616 0.91114 1.21031 1.07342 0.92302 1.00943 1.17270 0.99489 0.88339 0.82999 1.91514 1.93903 1.72596 1.53357 1.20286 1.08475 1.01904 0.90233 0.92077 0.95106 0.93689 0.91894 0.77240 0.88970 0.89056 0.84538 0.84606 0.84665 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.20 37.16 0.34 -3.14 16 2 C 0.25 5.75 2.16 -69.09 -0.15 5.60 16 3 H 0.04 1.07 6.15 -51.93 -0.32 0.76 16 4 C -0.63 -16.48 8.95 -34.44 -0.31 -16.79 16 5 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 6 C 0.05 1.29 5.19 -17.82 -0.09 1.20 16 7 N -0.89 -25.76 13.70 55.43 0.76 -25.00 16 8 Si 1.03 24.62 26.44 -169.99 -4.50 20.13 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.17 6.14 56.52 0.35 -5.82 16 12 N -0.70 -13.31 5.07 -54.94 -0.28 -13.59 16 13 C 0.50 9.32 7.87 -10.98 -0.09 9.23 16 14 O -0.53 -12.27 16.16 -14.35 -0.23 -12.50 16 15 C 0.04 0.50 5.22 36.01 0.19 0.69 16 16 O -0.28 -4.23 9.67 -39.33 -0.38 -4.61 16 17 C 0.16 2.04 6.68 -39.23 -0.26 1.77 16 18 C -0.22 -2.15 9.04 -39.42 -0.36 -2.50 16 19 C -0.05 -0.40 10.04 -39.61 -0.40 -0.80 16 20 C -0.20 -1.75 10.02 -39.49 -0.40 -2.15 16 21 C 0.14 1.50 7.30 -39.44 -0.29 1.21 16 22 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 23 C -0.19 -2.27 9.97 -39.36 -0.39 -2.66 16 24 H 0.06 1.39 5.47 -51.93 -0.28 1.11 16 25 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 28 H 0.39 6.35 8.53 -40.82 -0.35 6.00 16 29 H 0.09 0.96 7.65 -51.92 -0.40 0.56 16 30 H 0.09 0.92 7.67 -51.93 -0.40 0.52 16 31 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -31.90 299.22 -6.09 -37.99 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.82 Total: 2.88 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.20 Total: -8.33 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.48 Total: -38.60 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.61 Total: -17.11 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.50 Total: 20.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.90 -6.09 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.851 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds