Wall clock time and date at job start Mon Mar 30 2020 00:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35694 * 116.99557 * 2 1 4 4 C 1.38681 * 120.12937 * 0.02998 * 3 2 1 5 5 C 1.38058 * 120.11677 * 179.97438 * 4 3 2 6 6 C 1.38726 * 120.36511 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.87734 * 180.02562 * 6 5 4 8 8 C 1.37989 * 120.24517 * 359.73969 * 6 5 4 9 9 C 1.39717 * 119.88224 * 0.49818 * 8 6 5 10 10 C 1.47541 * 120.18086 * 179.78667 * 9 8 6 11 11 O 1.21593 * 120.00071 * 131.22572 * 10 9 8 12 12 N 1.34780 * 119.99952 * 311.50655 * 10 9 8 13 13 C 1.46502 * 119.99839 * 4.60849 * 12 10 9 14 14 C 1.46500 * 119.99808 * 184.61150 * 12 10 9 15 15 C 1.50697 * 109.46937 * 89.99857 * 14 12 10 16 16 H 1.08001 * 120.00467 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99583 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47366 * 59.99916 * 19 17 15 21 21 H 1.48497 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47048 * 299.99672 * 19 17 15 23 23 H 1.08997 * 109.47010 * 299.99683 * 1 2 3 24 24 H 1.08993 * 109.46964 * 59.99751 * 1 2 3 25 25 H 1.08999 * 109.46472 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.94220 * 359.96397 * 4 3 2 27 27 H 1.07997 * 119.82125 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.05639 * 180.27890 * 8 6 5 29 29 H 1.09001 * 109.46966 * 84.90650 * 13 12 10 30 30 H 1.08993 * 109.46876 * 204.90526 * 13 12 10 31 31 H 1.09000 * 109.47145 * 324.90661 * 13 12 10 32 32 H 1.08997 * 109.46710 * 209.99834 * 14 12 10 33 33 H 1.08996 * 109.46883 * 329.99794 * 14 12 10 34 34 H 0.96998 * 119.99475 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2923 2.3738 0.0006 5 6 1.9192 3.6038 0.0012 6 6 3.3041 3.6851 0.0005 7 9 3.9073 4.8939 0.0016 8 6 4.0678 2.5358 0.0048 9 6 3.4440 1.2855 -0.0008 10 6 4.2542 0.0525 -0.0010 11 8 4.0051 -0.8388 0.7877 12 7 5.2739 -0.0837 -0.8718 13 6 5.6422 1.0307 -1.7485 14 6 6.0139 -1.3462 -0.9414 15 6 5.3622 -2.2553 -1.9512 16 1 4.4843 -1.9259 -2.4872 17 6 5.8867 -3.5077 -2.1909 18 7 6.9560 -3.9087 -1.5386 19 14 5.0793 -4.6345 -3.4430 20 1 5.0888 -3.9804 -4.7762 21 1 5.8293 -5.9142 -3.5136 22 1 3.6774 -4.9049 -3.0343 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 0.2137 2.3186 0.0005 27 1 1.3283 4.5078 0.0021 28 1 5.1457 2.6026 0.0088 29 1 6.3194 1.7010 -1.2191 30 1 6.1368 0.6439 -2.6394 31 1 4.7445 1.5764 -2.0392 32 1 7.0428 -1.1480 -1.2417 33 1 6.0069 -1.8259 0.0373 34 1 7.3251 -4.7896 -1.7075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:28 Heat of formation + Delta-G solvation = -81.482432 kcal Electronic energy + Delta-G solvation = -20290.799531 eV Core-core repulsion = 16911.269108 eV Total energy + Delta-G solvation = -3379.530423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.85529 -40.41848 -38.53340 -37.01781 -34.78319 -32.69793 -31.43020 -29.79600 -27.85451 -27.17238 -25.97025 -24.11153 -22.55552 -21.99249 -19.38674 -17.93692 -17.19588 -16.99561 -16.48271 -16.01922 -15.69296 -15.41127 -15.16432 -14.74567 -14.52470 -14.22575 -14.05628 -13.22064 -13.00934 -12.74350 -12.48794 -12.20677 -12.05658 -11.93340 -11.67921 -11.18375 -11.13241 -10.95565 -10.86993 -10.54675 -10.13994 -9.64238 -9.23449 -8.94684 -8.40760 -8.13063 -7.62459 -6.01775 -4.06392 0.86626 1.13933 3.17651 3.24111 3.33745 3.37858 3.40866 3.64295 3.94825 4.26968 4.45890 4.57277 4.67216 4.93169 5.01894 5.10614 5.16948 5.32193 5.42815 5.48002 5.59898 5.73321 5.87626 5.91190 5.97690 6.09424 6.24050 6.58944 7.05617 7.33132 7.46613 7.55316 7.94763 8.25631 8.39337 8.91119 9.08058 9.58306 11.06334 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.005765 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.887329 B = 4855.859655 C = 5616.552232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.286 6.286 3 C 0.165 3.835 4 C -0.191 4.191 5 C -0.100 4.100 6 C 0.050 3.950 7 F -0.141 7.141 8 C -0.087 4.087 9 C -0.121 4.121 10 C 0.555 3.445 11 O -0.521 6.521 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.245 3.755 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.694 15.310 1.158 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.117 3.883 4 C -0.210 4.210 5 C -0.119 4.119 6 C 0.031 3.969 7 F -0.120 7.120 8 C -0.106 4.106 9 C -0.125 4.125 10 C 0.340 3.660 11 O -0.398 6.398 12 N -0.327 5.327 13 C -0.064 4.064 14 C 0.126 3.874 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.560 14.479 1.586 17.990 hybrid contribution -0.558 -0.211 -0.815 1.011 sum -11.118 14.267 0.771 18.104 Atomic orbital electron populations 1.23155 0.78461 1.04529 1.00979 1.86338 1.21069 1.25390 1.86949 1.18999 0.90928 0.84972 0.93377 1.21021 1.00441 0.91024 1.08466 1.20955 0.92649 0.98563 0.99752 1.17333 0.90844 0.80329 1.08427 1.91489 1.83748 1.42241 1.94525 1.21256 1.01195 0.89581 0.98600 1.19438 0.91250 0.94629 1.07197 1.17728 0.80706 0.85505 0.82033 1.90779 1.68515 1.41411 1.39053 1.48077 1.32511 1.16003 1.36118 1.21805 0.99786 0.89646 0.95138 1.19341 0.90746 0.78505 0.98759 1.21409 1.12865 0.99929 1.22370 0.92451 1.24927 0.95010 0.97667 0.96445 1.69925 1.21862 1.19984 1.41629 0.86554 0.79590 0.79811 0.81438 1.20264 1.21162 1.20177 0.92557 0.92617 0.87839 0.84095 0.84389 0.83313 0.93652 0.90451 0.92392 0.94743 0.93556 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 101.05 0.99 1.25 16 2 O -0.29 -4.90 9.52 -28.69 -0.27 -5.17 16 3 C 0.17 2.62 6.67 -38.72 -0.26 2.37 16 4 C -0.19 -2.22 9.03 -39.48 -0.36 -2.57 16 5 C -0.10 -1.09 10.01 -39.47 -0.39 -1.49 16 6 C 0.05 0.63 7.28 -39.49 -0.29 0.35 16 7 F -0.14 -1.77 17.26 2.25 0.04 -1.73 16 8 C -0.09 -1.25 7.74 -39.12 -0.30 -1.55 16 9 C -0.12 -2.13 4.92 -104.85 -0.52 -2.65 16 10 C 0.55 12.49 6.96 -12.47 -0.09 12.40 16 11 O -0.52 -13.96 16.06 -4.62 -0.07 -14.03 16 12 N -0.60 -13.25 2.86 -184.20 -0.53 -13.77 16 13 C 0.08 1.35 9.05 59.85 0.54 1.89 16 14 C 0.25 6.57 5.18 -5.20 -0.03 6.54 16 15 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 24 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 25 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 27 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.15 1.96 6.25 -52.48 -0.33 1.63 16 29 H 0.05 0.63 7.05 -51.93 -0.37 0.27 16 30 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 31 H 0.06 0.87 6.25 -51.93 -0.32 0.55 16 32 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -34.69 298.29 -5.49 -40.18 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -3.75 Total: -3.59 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.12 Total: 2.67 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.21 Total: -39.87 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.35 Total: -19.21 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.69 -5.49 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.300 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds