Wall clock time and date at job start Mon Mar 30 2020 00:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35694 * 116.99557 * 2 1 4 4 C 1.38681 * 120.12937 * 0.02998 * 3 2 1 5 5 C 1.38058 * 120.11677 * 179.97438 * 4 3 2 6 6 C 1.38726 * 120.36511 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.87734 * 180.02562 * 6 5 4 8 8 C 1.37989 * 120.24517 * 359.73969 * 6 5 4 9 9 C 1.39717 * 119.88224 * 0.49818 * 8 6 5 10 10 C 1.47541 * 120.18086 * 179.78667 * 9 8 6 11 11 O 1.21593 * 120.00071 * 131.22572 * 10 9 8 12 12 N 1.34780 * 119.99952 * 311.50655 * 10 9 8 13 13 C 1.46502 * 119.99839 * 4.60849 * 12 10 9 14 14 C 1.46500 * 119.99808 * 184.61150 * 12 10 9 15 15 C 1.50697 * 109.46937 * 89.99857 * 14 12 10 16 16 H 1.08001 * 120.00467 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99583 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99847 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47366 * 59.99916 * 19 17 15 21 21 H 1.48497 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47048 * 299.99672 * 19 17 15 23 23 H 1.08997 * 109.47010 * 299.99683 * 1 2 3 24 24 H 1.08993 * 109.46964 * 59.99751 * 1 2 3 25 25 H 1.08999 * 109.46472 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.94220 * 359.96397 * 4 3 2 27 27 H 1.07997 * 119.82125 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.05639 * 180.27890 * 8 6 5 29 29 H 1.09001 * 109.46966 * 84.90650 * 13 12 10 30 30 H 1.08993 * 109.46876 * 204.90526 * 13 12 10 31 31 H 1.09000 * 109.47145 * 324.90661 * 13 12 10 32 32 H 1.08997 * 109.46710 * 209.99834 * 14 12 10 33 33 H 1.08996 * 109.46883 * 329.99794 * 14 12 10 34 34 H 0.96998 * 119.99475 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2923 2.3738 0.0006 5 6 1.9192 3.6038 0.0012 6 6 3.3041 3.6851 0.0005 7 9 3.9073 4.8939 0.0016 8 6 4.0678 2.5358 0.0048 9 6 3.4440 1.2855 -0.0008 10 6 4.2542 0.0525 -0.0010 11 8 4.0051 -0.8388 0.7877 12 7 5.2739 -0.0837 -0.8718 13 6 5.6422 1.0307 -1.7485 14 6 6.0139 -1.3462 -0.9414 15 6 5.3622 -2.2553 -1.9512 16 1 4.4843 -1.9259 -2.4872 17 6 5.8867 -3.5077 -2.1909 18 7 6.9560 -3.9087 -1.5386 19 14 5.0793 -4.6345 -3.4430 20 1 5.0888 -3.9804 -4.7762 21 1 5.8293 -5.9142 -3.5136 22 1 3.6774 -4.9049 -3.0343 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 0.2137 2.3186 0.0005 27 1 1.3283 4.5078 0.0021 28 1 5.1457 2.6026 0.0088 29 1 6.3194 1.7010 -1.2191 30 1 6.1368 0.6439 -2.6394 31 1 4.7445 1.5764 -2.0392 32 1 7.0428 -1.1480 -1.2417 33 1 6.0069 -1.8259 0.0373 34 1 7.3251 -4.7896 -1.7075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067509423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:28 Heat of formation + Delta-G solvation = -104.960147 kcal Electronic energy + Delta-G solvation = -20291.817601 eV Core-core repulsion = 16911.269108 eV Total energy + Delta-G solvation = -3380.548493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.82783 -41.64681 -40.05674 -38.15226 -36.63149 -34.78532 -32.68394 -30.82711 -29.74648 -28.13821 -27.53531 -25.79228 -24.01457 -23.18127 -20.85829 -19.03924 -18.70037 -18.53133 -18.11150 -17.34287 -16.96899 -16.79260 -16.37697 -16.11349 -15.98615 -15.67830 -15.34610 -14.54298 -14.39222 -14.07714 -13.87253 -13.63039 -13.49679 -13.37229 -13.12978 -12.86895 -12.73818 -12.55115 -12.21185 -12.14997 -11.87832 -11.75549 -10.79053 -10.65408 -10.20536 -9.50393 -9.17617 -8.23451 -6.38711 -0.20764 0.11314 1.35510 1.40431 1.47842 1.74614 2.20204 2.28405 2.40595 2.54753 3.05682 3.19873 3.49686 3.68726 3.94725 4.03287 4.30861 4.31543 4.35978 4.39746 4.55563 4.66475 4.71511 4.86706 4.91005 4.95347 5.00186 5.09845 5.20494 5.52502 5.62697 5.79960 6.03897 6.33832 6.64341 6.70655 7.23561 7.39173 8.83784 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.005765 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.887329 B = 4855.859655 C = 5616.552232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.150 3.850 4 C -0.174 4.174 5 C -0.076 4.076 6 C 0.051 3.949 7 F -0.138 7.138 8 C -0.085 4.085 9 C -0.157 4.157 10 C 0.549 3.451 11 O -0.583 6.583 12 N -0.603 5.603 13 C 0.078 3.922 14 C 0.259 3.741 15 C -0.546 4.546 16 H 0.051 0.949 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.278 1.278 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.181 0.819 27 H 0.182 0.818 28 H 0.153 0.847 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.956 17.750 -0.136 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.102 3.898 4 C -0.192 4.192 5 C -0.094 4.094 6 C 0.031 3.969 7 F -0.116 7.116 8 C -0.104 4.104 9 C -0.161 4.161 10 C 0.338 3.662 11 O -0.464 6.464 12 N -0.334 5.334 13 C -0.064 4.064 14 C 0.138 3.862 15 C -0.585 4.585 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.203 1.203 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.198 0.802 27 H 0.199 0.801 28 H 0.171 0.829 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.818 16.977 0.265 21.274 hybrid contribution 0.103 -0.876 -0.363 0.954 sum -12.715 16.100 -0.097 20.516 Atomic orbital electron populations 1.23492 0.75661 1.05576 1.03354 1.86276 1.24280 1.26932 1.87237 1.19300 0.90550 0.86103 0.93799 1.21380 1.02040 0.89423 1.06397 1.21440 0.91979 0.99808 0.96203 1.17362 0.91583 0.79713 1.08210 1.91507 1.83899 1.41766 1.94478 1.21200 1.01642 0.89127 0.98457 1.19063 0.91812 0.93107 1.12072 1.18534 0.80338 0.86713 0.80646 1.90715 1.70035 1.44271 1.41368 1.48086 1.32387 1.15784 1.37116 1.22058 1.01432 0.88431 0.94472 1.18828 0.91076 0.80504 0.95771 1.21644 1.12892 1.01027 1.22911 0.93115 1.25872 0.95501 0.99174 0.98482 1.70046 1.23087 1.20610 1.42932 0.85448 0.78180 0.77850 0.79222 1.18396 1.20013 1.20328 0.90126 0.90045 0.87774 0.80192 0.80113 0.82929 0.90554 0.90820 0.90210 0.95254 0.98192 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -11.50 9.52 -80.66 -0.77 -12.27 16 3 C 0.15 4.60 6.67 22.83 0.15 4.76 16 4 C -0.17 -3.33 9.03 22.33 0.20 -3.13 16 5 C -0.08 -1.27 10.01 22.34 0.22 -1.04 16 6 C 0.05 1.11 7.28 22.33 0.16 1.27 16 7 F -0.14 -2.95 17.26 44.97 0.78 -2.18 16 8 C -0.08 -2.32 7.74 22.57 0.17 -2.15 16 9 C -0.16 -5.53 4.92 -20.01 -0.10 -5.63 16 10 C 0.55 26.03 6.96 86.70 0.60 26.63 16 11 O -0.58 -33.61 16.06 5.46 0.09 -33.52 16 12 N -0.60 -28.07 2.86 -854.93 -2.44 -30.51 16 13 C 0.08 2.62 9.05 127.77 1.16 3.77 16 14 C 0.26 14.74 5.18 85.63 0.44 15.18 16 15 C -0.55 -32.82 9.39 25.60 0.24 -32.58 16 16 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.52 5.46 84.66 0.46 0.99 16 18 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 19 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H 0.08 1.15 7.66 -2.39 -0.02 1.14 16 24 H 0.08 1.14 7.66 -2.39 -0.02 1.13 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.18 1.99 6.30 -2.91 -0.02 1.98 16 27 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.15 3.87 6.25 -2.91 -0.02 3.85 16 29 H 0.08 2.07 7.05 -2.39 -0.02 2.05 16 30 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 31 H 0.08 2.32 6.25 -2.39 -0.01 2.31 16 32 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 33 H 0.00 0.00 7.36 -2.39 -0.02 -0.02 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.26 298.29 5.92 -75.34 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.12 Total: 2.84 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 4.83 Total: 9.44 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.16 Total: -87.49 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.68 Total: -45.78 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -81.26 5.92 -75.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.621 kcal (2) G-P(sol) polarization free energy of solvation -81.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds