Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47158 * 2 1 4 4 C 1.37104 * 119.99578 * 264.76568 * 3 2 1 5 5 H 1.08005 * 119.99655 * 138.85341 * 4 3 2 6 6 C 1.38944 * 120.00291 * 318.85480 * 4 3 2 7 7 N 1.31417 * 119.99931 * 341.82456 * 6 4 3 8 8 Si 1.86795 * 120.00135 * 161.83144 * 6 4 3 9 9 H 1.48500 * 109.47331 * 89.99823 * 8 6 4 10 10 H 1.48502 * 109.46998 * 209.99953 * 8 6 4 11 11 H 1.48506 * 109.47048 * 329.99419 * 8 6 4 12 12 C 1.34776 * 120.00156 * 84.76832 * 3 2 1 13 13 O 1.21295 * 119.99594 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00182 * 359.97438 * 12 3 2 15 15 O 1.42896 * 109.47367 * 180.02562 * 14 12 3 16 16 C 1.35947 * 117.00331 * 180.02562 * 15 14 12 17 17 C 1.38709 * 120.02469 * 0.27496 * 16 15 14 18 18 C 1.38152 * 119.96463 * 180.25064 * 17 16 15 19 19 C 1.38462 * 120.02914 * 359.47521 * 18 17 16 20 20 F 1.35099 * 119.96673 * 180.29852 * 19 18 17 21 21 C 1.38450 * 120.05867 * 0.27310 * 19 18 17 22 22 C 1.38145 * 120.03337 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47138 * 300.00301 * 1 2 3 24 24 H 1.09005 * 109.47016 * 60.00476 * 1 2 3 25 25 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47138 * 239.99699 * 2 1 3 27 27 H 1.08998 * 109.46888 * 119.99880 * 2 1 3 28 28 H 0.96996 * 119.99814 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46672 * 59.99837 * 14 12 3 30 30 H 1.09005 * 109.47182 * 300.00247 * 14 12 3 31 31 H 1.07994 * 120.01909 * 0.02576 * 17 16 15 32 32 H 1.07998 * 119.98555 * 179.74471 * 18 17 16 33 33 H 1.08004 * 119.98097 * 180.02562 * 21 19 18 34 34 H 1.08002 * 120.01576 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9913 -1.1825 5 1 2.0743 3.0218 -1.3536 6 6 3.0372 1.2840 -2.1606 7 7 3.6792 0.1816 -1.8451 8 14 3.0500 1.9002 -3.9239 9 1 4.2057 2.8117 -4.1214 10 1 3.1660 0.7458 -4.8508 11 1 1.7885 2.6330 -4.2014 12 6 2.1426 2.0520 1.1623 13 8 2.5465 3.1958 1.1622 14 6 1.7787 1.3816 2.4619 15 8 1.9944 2.2902 3.5435 16 6 1.7132 1.8386 4.7945 17 6 1.2450 0.5457 4.9768 18 6 0.9547 0.0898 6.2482 19 6 1.1413 0.9191 7.3411 20 9 0.8628 0.4699 8.5844 21 6 1.6135 2.2081 7.1610 22 6 1.8998 2.6683 5.8903 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1593 -0.3123 -2.5279 29 1 2.4001 0.4968 2.6007 30 1 0.7292 1.0883 2.4381 31 1 1.1040 -0.1029 4.1249 32 1 0.5863 -0.9154 6.3901 33 1 1.7590 2.8538 8.0145 34 1 2.2685 3.6737 5.7502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -85.264283 kcal Electronic energy + Delta-G solvation = -19766.758862 eV Core-core repulsion = 16387.064446 eV Total energy + Delta-G solvation = -3379.694416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.85137 -40.09907 -38.53521 -36.88455 -34.99301 -32.21216 -31.32864 -29.71784 -29.55780 -27.88298 -24.76936 -23.14088 -22.45193 -22.05060 -19.27783 -18.34157 -17.32436 -16.84896 -16.55701 -15.97824 -15.66770 -15.50617 -14.97526 -14.72528 -14.33830 -13.79574 -13.67572 -13.49325 -13.03893 -12.99215 -12.76489 -12.32363 -12.08518 -11.81959 -11.61215 -11.15595 -11.06266 -10.86053 -10.80880 -10.41267 -10.39531 -10.20705 -9.25906 -9.01401 -8.50993 -8.06009 -7.54229 -6.41270 -4.10404 1.09493 1.19895 3.13245 3.13477 3.22869 3.30679 3.53752 3.74268 4.12941 4.26363 4.61163 4.69670 4.83428 4.93177 5.03722 5.21766 5.35506 5.45245 5.55393 5.59317 5.81006 5.82040 6.04907 6.07058 6.09399 6.17978 6.23594 6.35698 6.66112 6.74976 7.08335 7.46033 7.50731 8.19188 8.41033 9.08353 9.25740 9.86854 10.64140 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042671 B = 0.003962 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.029271 B = 7065.998978 C = 7429.069876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.435 5.435 4 C -0.310 4.310 5 H 0.090 0.910 6 C 0.040 3.960 7 N -0.870 5.870 8 Si 0.921 3.079 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.462 3.538 13 O -0.558 6.558 14 C 0.043 3.957 15 O -0.282 6.282 16 C 0.132 3.868 17 C -0.187 4.187 18 C -0.110 4.110 19 C 0.046 3.954 20 F -0.146 7.146 21 C -0.112 4.112 22 C -0.127 4.127 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 -3.737 11.705 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.157 5.157 4 C -0.437 4.437 5 H 0.108 0.892 6 C -0.165 4.165 7 N -0.508 5.508 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.249 3.751 13 O -0.439 6.439 14 C -0.035 4.035 15 O -0.194 6.194 16 C 0.085 3.915 17 C -0.206 4.206 18 C -0.129 4.129 19 C 0.026 3.974 20 F -0.125 7.125 21 C -0.131 4.131 22 C -0.145 4.145 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.645 -3.137 11.559 13.241 hybrid contribution -0.063 -0.370 -0.632 0.735 sum -5.708 -3.507 10.927 12.818 Atomic orbital electron populations 1.22251 0.97955 1.00616 1.01736 1.21540 0.91805 0.85436 1.03722 1.43361 1.56316 1.11818 1.04177 1.19395 1.35276 0.98830 0.90218 0.89194 1.25455 0.93775 0.96486 1.00754 1.69919 1.29181 1.17453 1.34221 0.86025 0.79113 0.78386 0.81736 1.20150 1.20757 1.19279 1.19877 0.83008 0.88382 0.83877 1.90572 1.48843 1.18233 1.86235 1.22851 1.01500 0.92755 0.86395 1.86243 1.80883 1.40604 1.11651 1.19245 0.94116 0.92351 0.85789 1.21215 1.05387 0.95889 0.98070 1.20905 1.00693 1.00099 0.91204 1.17539 1.06003 0.94169 0.79658 1.91465 1.91988 1.89563 1.39470 1.20911 0.99986 0.94440 0.97760 1.20324 1.03986 1.00892 0.89327 0.93989 0.92037 0.92793 0.87427 0.93477 0.92100 0.90000 0.90327 0.84286 0.84634 0.84266 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.15 37.16 0.38 -2.38 16 2 C 0.10 2.00 5.41 -4.04 -0.02 1.98 16 3 N -0.44 -10.67 2.50 -114.81 -0.29 -10.96 16 4 C -0.31 -8.37 8.84 -14.93 -0.13 -8.50 16 5 H 0.09 2.54 7.82 -52.48 -0.41 2.13 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -22.82 11.61 55.50 0.64 -22.17 16 8 Si 0.92 20.07 29.59 -169.99 -5.03 15.04 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.46 11.27 7.67 -10.99 -0.08 11.19 16 13 O -0.56 -15.97 16.41 -14.36 -0.24 -16.20 16 14 C 0.04 0.80 3.83 36.00 0.14 0.94 16 15 O -0.28 -5.35 9.67 -39.48 -0.38 -5.73 16 16 C 0.13 2.01 6.69 -39.24 -0.26 1.74 16 17 C -0.19 -2.41 9.04 -39.44 -0.36 -2.77 16 18 C -0.11 -1.28 10.02 -39.53 -0.40 -1.68 16 19 C 0.05 0.55 7.30 -39.42 -0.29 0.27 16 20 F -0.15 -1.80 17.27 2.25 0.04 -1.76 16 21 C -0.11 -1.30 10.02 -39.54 -0.40 -1.69 16 22 C -0.13 -1.68 9.98 -39.44 -0.39 -2.07 16 23 H 0.04 0.64 6.60 -51.93 -0.34 0.30 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.11 2.42 5.76 -51.93 -0.30 2.12 16 27 H 0.05 0.84 6.66 -51.93 -0.35 0.50 16 28 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 29 H 0.08 1.36 6.92 -51.93 -0.36 1.00 16 30 H 0.08 1.23 6.07 -51.93 -0.32 0.92 16 31 H 0.14 1.59 6.30 -52.49 -0.33 1.26 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 297.14 15.07 4.48 4.48 Total: -1.00 -31.16 297.14 -6.33 -37.49 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.65 Total: 1.85 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.90 Total: -2.02 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.36 Total: -33.13 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.62 Total: -21.93 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.16 -6.33 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.778 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds